Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00899 ATGGAGAAAATCCCCATTGAAGAAGTGTTTGAGCAGCTGAAATGTACAAGAGAAGGTTTAACATCTCAAGAAGGGGAGAACCGTCTTCAAATCTTTGGGCCCAACAAGCTAGAAGAGAAAAAGGAAAGCAAGATTCTGAAGTTCCTTGGTTTTATGTGGAATCCCCTTTCATGGGTCATGGAGGCTGCAGCTATCATGGCCATTGCCTTGGCTAACGGAGGCGGTAAGGGACCGGATTGGCAGGACTTCGTCGGTATCGTGTGTCTGCTGGTTATCAACTCCACCATTAGTTTCATTGAAGAGAACAATGCTGGTAATGCTGCTGCTGCTCTTATGGCTGGTCTTGCTCCTAAGACTAAGGTTCTGAGGGATGGGAAATGGTGTGAACAAGATGCAGCAATTCTGGTACCAGGAGACGTGATTAGTGTCAAATTGGGAGACATCATCCCGGCCGATGCTCGTCTTCTGGAGGGTGATCCGTTAAAGGTGGATCAATCTGCATTGACGGGAGAATCGCTTCCGGTGACGAAGCATCCAGGGGATGAAGTGTTCTCAGGTTCAACTTGCAAACAAGGAGAAATAGAAGCTGTTGTTATTGCCACTGGTGTCCACACCTTCTTTGGAAAGGCAGCTCATCTGGTTGACAGCACCAACCAAGTTGGTCACTTCCAAAAGGTTCTCACTGCCATTGGGAACTTCTGTATCTGTTCCATTGCCATTGGTATGCTGATCGAGATCATCGTCATGTACCCGATCCAACACCGTGCCTACCGAGATGGAATCGACAATCTTTTGGTTCTCTTGATTGGAGGAATTCCCATTGCTATGCCTACTGTCTTGTCTGTCACTATGGCTATTGGATCTCACAAGTTGTCCCAACAGGGAGCTATCACCAAGAGAATGACTGCCATCGAAGAAATGGCCGGTATGGACGTCCTCTGCAGCGACAAGACCGGAACGCTCACGCTTAACAAGTTGAGTGTTGACAAGAACTTGATTGAGGTATTTGTCAAGGGTGTCGACAAAGACCATGTCGTTCTTCTTGCTGCCCGGGCTTCTAGGACTGAAAACCAGGATGCCATTGATGCTGCCATGGTCGGTATGCTTGCTGACCCGAAAGAGGCAAGAGCTGGCATTAGAGAAGTTCACTTCCTCCCATTCAACCCTGTCGACAAGCGAACTGCCTTGACTTACATCGATTCCAACGGTAACTGGCACCGTGCTAGCAAAGGAGCTCCCGAGCAGATCTTGAGTCTTTGCAACTGCAAAGAGGACTTCAAGAGGAAGGTGTTTTCTGTAATCGACAAGTTTGCCGAGCGTGGACTTCGATCGTTGGCTGTTGCTCGACAGGAAGTTCCTGAGAAAACAAAGGAGAGTCCTGGTTCTCCATGGCAATTCGTCGGTTTGTTGCCTCTTTTCGATCCTCCTCGACACGACAGTGCTGAAACCATCCGCCGAGCTCTCAACTTGGGAGTGAATGTCAAGATGATTACAGGTGATCAACTTGCTATTGGAAAAGAAACCGGCCGAAGACTCGGAATGGGAACGAACATGTACCCGTCATCTTCCTTACTCGGTCAACACAAGGACGAAAGCATTGCTGGCCTCCCAGTTGAAGAGTTGATTGAGAAAGCTGATGGATTTGCCGGAGTGTTTCCAGAACACAAATATGAAATTGTCAAGAAGCTGCAAGAAAGGAAGCACATTTGTGGAATGACAGGAGATGGTGTCAATGATGCCCCTGCTTTGAAGAAGGCTGACATTGGTATTGCTGTTGCTGATGCTACTGATGCTGCACGAGGCGCATCGGATATCGTTCTAACCGAGCCTGGATTGAGTGTTATCATCAGTGCCGTGTTGACTAGCCGAGCAATCTTCCAAAGGATGAAGAACTATACCATTTATGCAGTTTCCATCACCATTCGTATTGTGTTTGGTTTCATGTTGATCGCTCTCATTTGGAAGTTCGATTTCTCACCGTTCATGGTTCTAATTATTGCCATCTTGAACGACGGTACAATTATGACAATCTCAAAGGACAGAGTGAAGCCATCTCCATTGCCTGACAGTTGGAAACTCAAGGAGATTTTCGCCACCGGAGTAGTACTCGGTGGGTACTTGGCGTTGATGACGGTTATATTCTTCTGGCTAATGGACGGAACCGACTTCTTCACTGATAAATTCGGTGTGAGATCGATTCGTCATAACGAAGACGAAAAGATGGCTGCTTTGTACTTGCAAGTGAGTATTGTTAGCCAAGCTTTGATTTTCGTAACTCGATCACGTAGCTGGTCGTACGTTGAGCGTCCCGGACTTCTCTTAGTCAGCGCTTTCTTCATTGCACAATTGGTTGCAACTGTGATAGCTGTGTATGCTGATTGGTCATTTGCTAAGATCAAGGGCGTTGGATGGGGATGGGCTGGTGTCATCTGGCTTTATAGCATTGTTTTTTACATTCCGCTCGATATCATGAAGTTCGCTATTCGATACATCTTGAGCGGAAAGGCGTGGGTGAGCATGTTAGAAAACAAGACTGCCTTCACTACTAAGAAAGACTATGGAAAAGAAGAAAGGGAAGCTCAATGGGCACTTGCTCAAAGGACACTACATGGACTTCAACCACCCGAATCGACAAACATCTTCTCCGAAAAGAGTAGCTACCGAGAACTCTCTGAGATCGCCGAGCAAGCTAAGAGACGTGCCGAGATTGCAAGGCTTCGTGAGCTCAACACGCTCAAGGGTCACGTCGAGTCAGTCGTTAAGTTGAAGGGGCTCGATATCGACACGATCCAGCAGCACTACACAGTGTGA 2811 47.35 MEKIPIEEVFEQLKCTREGLTSQEGENRLQIFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGGGKGPDWQDFVGIVCLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWCEQDAAILVPGDVISVKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKHPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGMLIEIIVMYPIQHRAYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFVKGVDKDHVVLLAARASRTENQDAIDAAMVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSNGNWHRASKGAPEQILSLCNCKEDFKRKVFSVIDKFAERGLRSLAVARQEVPEKTKESPGSPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQHKDESIAGLPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGGYLALMTVIFFWLMDGTDFFTDKFGVRSIRHNEDEKMAALYLQVSIVSQALIFVTRSRSWSYVERPGLLLVSAFFIAQLVATVIAVYADWSFAKIKGVGWGWAGVIWLYSIVFYIPLDIMKFAIRYILSGKAWVSMLENKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPESTNIFSEKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTIQQHYTV 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8278770 8283806 + CmoCh12G008990.1 Cmo12g00899 393587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00899 936 Pfam E1-E2 ATPase 116 293 - -
Cmo12g00899 936 SUPERFAMILY Calcium ATPase, transmembrane domain M 3 832 IPR023298 -
Cmo12g00899 936 SUPERFAMILY HAD-like 310 620 IPR036412 -
Cmo12g00899 936 Gene3D - 117 201 - -
Cmo12g00899 936 SFLD p-type atpase 296 624 IPR044492 -
Cmo12g00899 936 PANTHER PLASMA MEMBRANE ATPASE 1 916 - -
Cmo12g00899 936 Coils Coil 887 907 - -
Cmo12g00899 936 ProSitePatterns E1-E2 ATPases phosphorylation site. 316 322 IPR018303 -
Cmo12g00899 936 Gene3D - 885 936 - -
Cmo12g00899 936 CDD P-type_ATPase_H 19 826 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cmo12g00899 936 SFLD Haloacid Dehalogenase 296 624 - -
Cmo12g00899 936 Gene3D - 311 610 IPR023214 -
Cmo12g00899 936 SMART Cation_ATPase_N_a_2 2 72 IPR004014 -
Cmo12g00899 936 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 86 334 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo12g00899 936 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 548 661 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo12g00899 936 Pfam haloacid dehalogenase-like hydrolase 310 587 - -
Cmo12g00899 936 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 19 791 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cmo12g00899 936 Pfam Cation transporter/ATPase, N-terminus 3 66 IPR004014 -
Cmo12g00899 936 Gene3D - 79 800 - -
Cmo12g00899 936 Gene3D - 326 473 IPR023299 GO:0000166
Cmo12g00899 936 SUPERFAMILY Calcium ATPase, transduction domain A 117 214 IPR008250 -
Cmo12g00899 936 PANTHER CALCIUM-TRANSPORTING ATPASE 1 916 - -
Cmo12g00899 936 PRINTS H+-transporting ATPase (proton pump) signature 545 561 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo12g00899 936 PRINTS H+-transporting ATPase (proton pump) signature 604 629 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo12g00899 936 PRINTS H+-transporting ATPase (proton pump) signature 745 766 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo12g00899 936 PRINTS H+-transporting ATPase (proton pump) signature 573 589 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo12g00899 936 PRINTS H+-transporting ATPase (proton pump) signature 430 448 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo12g00899 936 PRINTS P-type cation-transporting ATPase superfamily signature 573 592 - -
Cmo12g00899 936 PRINTS P-type cation-transporting ATPase superfamily signature 596 608 - -
Cmo12g00899 936 PRINTS P-type cation-transporting ATPase superfamily signature 468 479 - -
Cmo12g00899 936 PRINTS P-type cation-transporting ATPase superfamily signature 314 328 - -
Cmo12g00899 936 PRINTS P-type cation-transporting ATPase superfamily signature 490 500 - -
Cmo12g00899 936 PRINTS P-type cation-transporting ATPase superfamily signature 164 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00899 Cmo-Chr12:8278770 Cmo14g01395 Cmo-Chr14:11475025 0 dispersed
Cmo01g01612 Cmo-Chr1:12307894 Cmo12g00899 Cmo-Chr12:8278770 0 transposed
Cmo11g00369 Cmo-Chr11:1826124 Cmo12g00899 Cmo-Chr12:8278770 0 transposed
Cmo12g00243 Cmo-Chr12:1590880 Cmo12g00899 Cmo-Chr12:8278770 0 transposed
Cmo12g00899 Cmo-Chr12:8278770 Cmo05g00731 Cmo-Chr5:3833966 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00899 K01535 - csv:101221564 1753.03