Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00920 ATGGATAACATTCTCGATGAGTATCTGAAATATTGGGAAACGGACATGTTTCTGCTGACGGAAGACTCCGGCAGCGGCGGTTGGGGACTGGAGGAAGCATTTTACAGTGCTTACAATTCGAGCTCGCCGGACGGGAAGGTGTCGCCGTCGTCGCCGTCGGAGGCGTCGAAGAATATCGTATCGGAGAGAAACCGGAGAAAGAAGCTTAACGATAGGCTTATTGCTCTCCGAGCTGTGGTCCCCAATATCACCAAAATGGACAAGGCGTCAATAATAAAAGATGCCATCGTATACATCCAAGAGTTGCGAGCGGAAGAGAAGAGAATCGAAACAGAGATTTCCGATCTGGAATCAAGCGTAAACAACAATGGATCAAGAACCACAAATCAATGGAACGACGAAAACGGAGATCGAATTTGGACGAACATGAAATGGAATCGGCAAACAACTGACGCTTCATCGTCTTCCTCAATCGAAGTTCTCGATTTGAGTGTGAATTACGTGGGCGAGAAGGTGATGGTGGTGAGTTTGACATGCTTACGTCGAGGCAACACAATTTTGAAGGTTTGGGAAGTGATTGAATCGCTGAAGTTGAAGATCATTACCGCTAATATCAGTGTCTTCGCAAACAAGCTCTTGAACACGCTCTTCATTGAGCGGCCCAATCTACCGACTAAGTCCGTCTTCATCGATACAATGAAATGCTTCGAGTCCGACGGACACAATCTGGTTTCCCAGCTCAAGGCGTTTCTTTCTCTCTATCAAATCTTCCGTTTTGCTATCAGAATTTCAACAATTCTCGATTCTCTTCTTCTACACAAGCCTTGCAATTCCAGTTTTCATTTGCAAAATCTTTCAAACAAAATACCCAAATTGCTCGATCAAGATCTCCGTCGCTTTTCCTCCATCGAAAGAGCTTTCGATCAGATTGAAAAGCGTTCTTCAATTGCCCCGTGTCGAAGGCAGGTAGTTGCTGTTGAAGAGAAGAACTCTGGAATCATAACCTTCAATTCTGAGATGGATTGGGTTTAG 1032 44.96 MDNILDEYLKYWETDMFLLTEDSGSGGWGLEEAFYSAYNSSSPDGKVSPSSPSEASKNIVSERNRRKKLNDRLIALRAVVPNITKMDKASIIKDAIVYIQELRAEEKRIETEISDLESSVNNNGSRTTNQWNDENGDRIWTNMKWNRQTTDASSSSSIEVLDLSVNYVGEKVMVVSLTCLRRGNTILKVWEVIESLKLKIITANISVFANKLLNTLFIERPNLPTKSVFIDTMKCFESDGHNLVSQLKAFLSLYQIFRFAIRISTILDSLLLHKPCNSSFHLQNLSNKIPKLLDQDLRRFSSIERAFDQIEKRSSIAPCRRQVVAVEEKNSGIITFNSEMDWV 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8471988 8477385 + CmoCh12G009200.1 Cmo12g00920 393608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00920 343 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 221 - -
Cmo12g00920 343 Pfam Helix-loop-helix DNA-binding domain 60 102 IPR011598 GO:0046983
Cmo12g00920 343 SMART finulus 59 108 IPR011598 GO:0046983
Cmo12g00920 343 Gene3D - 48 119 IPR036638 GO:0046983
Cmo12g00920 343 MobiDBLite consensus disorder prediction 41 62 - -
Cmo12g00920 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 102 IPR011598 GO:0046983
Cmo12g00920 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 117 IPR036638 GO:0046983
Cmo12g00920 343 Coils Coil 99 119 - -
Cmo12g00920 343 PANTHER TRANSCRIPTION FACTOR BHLH35 2 221 - -
Cmo12g00920 343 MobiDBLite consensus disorder prediction 41 58 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00361 Cmo12g00920 CCT
Cmo10g00402 Cmo12g00920 CCT
Cmo05g00756 Cmo12g00920 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00920 Cmo-Chr12:8471988 Cmo19g00756 Cmo-Chr19:7694317 2.43E-18 dispersed
Cmo20g00557 Cmo-Chr20:2692440 Cmo12g00920 Cmo-Chr12:8471988 4.56E-22 transposed
Cmo10g00402 Cmo-Chr10:1819981 Cmo12g00920 Cmo-Chr12:8471988 4.49E-63 wgd
Cmo11g00361 Cmo-Chr11:1780118 Cmo12g00920 Cmo-Chr12:8471988 6.81E-65 wgd
Cmo12g00920 Cmo-Chr12:8471988 Cmo05g00756 Cmo-Chr5:4037644 1.46E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10758 PF00010 HLH 1.60E-09 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00920 - - csv:101203107 258.84