Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00924 ATGAGTTCGTTCAAGGGCTCTCCGTTTGGAAGACGGAGTGATGTGGAGTCTGGTAGTAGCAACTCCGGTGAGCCGGAGGAGGAGGAATCATCCAATCCTTTCGCTATTCCCAGAACTAAGCATGCTTCTGTTGACAGACTCCGCCGCTGGAGACAAGCTGCGCTCGTGTTAAATGCTTCTCGTCGATTTCGGTATACTTTAGACTTGAAAAAGGAAGAAGAAAAGAAAGAAGCTTTGAAAAAGATTAGAGCACATGCACAAGCCATACGAGCTGCATATCGCTTTAAAGAGGCTGGGGATCGTCTAAGAGGTTCTTTAGGTTCAGGGCCTTCGAGAGCAGAAGCTCCAAATGGTGATTTTTCTGTTGGGCAAGAGCAACTGGCTGCGTTGGTAAAGGATCGTAATGTTGATAGTCTGGAGGAGCAATATGGAGGGGTTAAAGGGGTGGCAGATATGTTAGAAACGAATTTAGAGAAGGGGATAATTGGTGATGACTCTGATTTACTGAAACGAAGAAACACATATGGTTCAAACACATATCCTCAGAAACCAGGAAGGAGTTTTTGGAGGTTTCTCTGGGAAGCTTGGCAAGATCTTACATTGATCATATTGATGATAGCGGCTGTTGCTTCATTGGTGCTAGGCATAAAGACTGAGGGTATCAAGGAAGGCTGGTATGATGGTGGAAGCATTGCTTTTGCAGTTCTTCTTGTCATTGTTGTAACAGCTATAAGTGACTACCGACAATCTCTTCAATTTCAGAATTTGAATAAGGAAAAGAGGAACATACAAGTGGAGGTTGTTCGAGGTGGTCGTCGAATTGAGGTCTCAATTTATGACATTGTGGTTGGAGATGTTATACCACTCAATATTGGTGATCAGGTCCCTGCTGACGGCATCTTAATTTCTGGACACTCACTTGCAATTGATGAATCAAGCATGACTGGAGAGAGCAAGATCGTTCAAAAGCAGCATGCTAAGGACCCTTTCCTGATGTCTGGATGCAAAGTGGCTGATGGTCATGGCACTATGCTGGTTACAAGTGTTGGAGTTAATACTGAATGGGGTTTGCTTATGGCAAGTATTTCTGAAGACAATGGCGAGGAAACTCCTTTGCAGGTGCGTTTAAATGGTGTGGCAACTTTAATTGGTATTGTTGGACTCTCAATAGCTTTCGCTGTCTTGATTGTGCTCCTCGCAAGATATTTCACTGGTCACACCAAAAATCCAGATGGAAGCCGTCAGTTTATTGCAGGGCAGACAAAAGTTGGTCGTGCCGTTGATGGGGCCATCAAAATTGTCACTATTGCGGTGACCATCGTTGTGGTTGCTGTGCCTGAAGGGCTTCCACTAGCTGTAACATTAACCCTTGCTTACTCAATGAGAAAGATGATGGCAGACAAGGCACTGGTGCGGAGGCTATCAGCATGTGAGACGATGGGGTCTGCTACAACTATTTGTAGTGATAAGACTGGAACCTTAACTATAAATCAGATGACCATTGTTGAGGCTTATGTTGGTGGGAAGAAGACTGATCCACCAGAGAAGAAGTCAGAGTCATCTTCCATATTATACTCCTTACTTGTTGAAGGCATTGCTCTGAACTCAAACGGCAGTGTATATGTGCCTGAGAGTGGTGGAGAGGCAGAGGTTACAGGTTCGCCTACAGAAAAGGCTATTCTTAACTGGGGTATCAAGCTGGGAATGAACTTTGAAGCAATAAGAAAGGAATGTGCAATTCTTCACGTTTTCCCCTTCAGCTCAGACAAAAAACGTGGTGGTGTTGCAGGTCAACGGGATAATCAAGTTTATATACATTGGAAAGGTGCTGCTGAGATTGTCTTAGCATCGTGCACGCAGTACATGGATGAGCATGATCATTCTGTCCTACTAGATGAAGATAAGATGACATATTTCAAGAGAGCTATTGAGGATATGGCTTCGCGTAGTTTACGTTGTGTTGCACTTGCATATAGATCTTGTGAACCTGAGAATGTTCCTGACGGTGAAGAACAATTGAGTAAGTGGGCTCTACCAGAAGACGACCTTGTTTTGTTGGCTATAGTTGGTTTGAAGGACCCCTGTCGGCCAGGAGTAAGAGATGCTGTACGACTTTGTCAAAAAGCTGGTGTTAAGGTACGAATGGTCACTGGTGATAATGTCCAAACTGCTAGAGCTATTGCACTGGAATGTGGAATACTTGGTTCAGATTCAGATGCTACTGAACCAAATCTTATTGAAGGAAAAGCATTCCGTGCCCTGACTGATGCCCAAAGAGAAGAAATTGCTGAGAAAATATCAGTGATGGGTCGGTCCTCTCCCAATGATAAGCTTCTCCTTGTGCAAGCCTTGAGAAAGAGAGGACATGTAGTTGCTGTTACTGGAGATGGTACAAATGATGCTCCTGCATTACATGAGGCAGATATTGGCCTTGCAATGGGTATCCAGGGGACAGAAGTTGCTAAAGAAAGCTCAGATATTATTATTTTAGATGACAACTTTGCTTCAGTTGTGAAGGTTGTGAGGTGGGGCCGATCAGTATATGCAAATATTCAGAAATTCATCCAGTTTCAGCTCACTGTCAATGTTGCGGCACTCATTATCAATGTCGTGGCGGCAATATCCTCCGGTGATGTCCCACTAAATGCTGTGCAGCTTTTGTGGGTTAATCTTATTATGGACACTCTCGGAGCATTAGCATTGGCTACTGAACCACCAACCGATCACCTCATGGACAGGACGCCTGTTGGTAGAAGTGAACCTCTTATAACAAATATCATGTGGAGAAACCTGCTGATACAGGCATTTTATCAAGTTACTGTGTTGCTTGTCCTCAACTTTCGCGGTCGAAGTTTGCTTCATTTGAACCACTCTCATGTAGAAGCTATCAAAGTGAAGAATACGTTGATTTTCAATGCATTTGTGCTTTGTCAAGTTTTTAATGAATTTAATGCTCGAAAGCCAGATGAGAAGAATATATTCAAAGGAGTCAATAAAAATTACCTCTTTATTGGGATCATTGGAATTACTCTTGTGCTCCAGGTTATAATAATCGAGTTTCTGGGGAAATTCACATCCACAGTTAGACTTAATTGGAAGTATTGGATTATTTCCATAATCATTGGTGTTATCAGTTGGCCCCTAGCTCTCCTTGGGAAATTCATACCTGTTCCTGAAACTCCCTTCCATGTGCTTATTATCAGAATGTTCCGTAAACGACGAGCTGGGAGATCGTAA 3237 43.28 MSSFKGSPFGRRSDVESGSSNSGEPEEEESSNPFAIPRTKHASVDRLRRWRQAALVLNASRRFRYTLDLKKEEEKKEALKKIRAHAQAIRAAYRFKEAGDRLRGSLGSGPSRAEAPNGDFSVGQEQLAALVKDRNVDSLEEQYGGVKGVADMLETNLEKGIIGDDSDLLKRRNTYGSNTYPQKPGRSFWRFLWEAWQDLTLIILMIAAVASLVLGIKTEGIKEGWYDGGSIAFAVLLVIVVTAISDYRQSLQFQNLNKEKRNIQVEVVRGGRRIEVSIYDIVVGDVIPLNIGDQVPADGILISGHSLAIDESSMTGESKIVQKQHAKDPFLMSGCKVADGHGTMLVTSVGVNTEWGLLMASISEDNGEETPLQVRLNGVATLIGIVGLSIAFAVLIVLLARYFTGHTKNPDGSRQFIAGQTKVGRAVDGAIKIVTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTINQMTIVEAYVGGKKTDPPEKKSESSSILYSLLVEGIALNSNGSVYVPESGGEAEVTGSPTEKAILNWGIKLGMNFEAIRKECAILHVFPFSSDKKRGGVAGQRDNQVYIHWKGAAEIVLASCTQYMDEHDHSVLLDEDKMTYFKRAIEDMASRSLRCVALAYRSCEPENVPDGEEQLSKWALPEDDLVLLAIVGLKDPCRPGVRDAVRLCQKAGVKVRMVTGDNVQTARAIALECGILGSDSDATEPNLIEGKAFRALTDAQREEIAEKISVMGRSSPNDKLLLVQALRKRGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRTPVGRSEPLITNIMWRNLLIQAFYQVTVLLVLNFRGRSLLHLNHSHVEAIKVKNTLIFNAFVLCQVFNEFNARKPDEKNIFKGVNKNYLFIGIIGITLVLQVIIIEFLGKFTSTVRLNWKYWIISIIIGVISWPLALLGKFIPVPETPFHVLIIRMFRKRRAGRS 1078
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8557941 8585851 + CmoCh12G009240.1 Cmo12g00924 393612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00924 1078 Coils Coil 69 89 - -
Cmo12g00924 1078 Pfam Cation transporting ATPase, C-terminus 879 1055 IPR006068 -
Cmo12g00924 1078 Gene3D - 194 1046 - -
Cmo12g00924 1078 SUPERFAMILY HAD-like 485 899 IPR036412 -
Cmo12g00924 1078 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 130 1057 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cmo12g00924 1078 SFLD p-type atpase 469 846 IPR044492 -
Cmo12g00924 1078 MobiDBLite consensus disorder prediction 1 38 - -
Cmo12g00924 1078 Gene3D - 168 363 - -
Cmo12g00924 1078 MobiDBLite consensus disorder prediction 1 28 - -
Cmo12g00924 1078 Pfam haloacid dehalogenase-like hydrolase 484 808 - -
Cmo12g00924 1078 SMART Cation_ATPase_N_a_2 142 216 IPR004014 -
Cmo12g00924 1078 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 760 874 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo12g00924 1078 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 231 403 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo12g00924 1078 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 427 515 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo12g00924 1078 Pfam Ca2+-ATPase N terminal autoinhibitory domain 32 74 IPR024750 GO:0005516
Cmo12g00924 1078 Pfam E1-E2 ATPase 263 465 - -
Cmo12g00924 1078 Pfam Cation transporter/ATPase, N-terminus 143 211 IPR004014 -
Cmo12g00924 1078 ProSitePatterns E1-E2 ATPases phosphorylation site. 489 495 IPR018303 -
Cmo12g00924 1078 SUPERFAMILY Calcium ATPase, transduction domain A 263 360 IPR008250 -
Cmo12g00924 1078 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 494 691 IPR023299 GO:0000166
Cmo12g00924 1078 PANTHER CATION TRANSPORTING ATPASE 20 1067 - -
Cmo12g00924 1078 PRINTS P-type cation-transporting ATPase superfamily signature 310 324 - -
Cmo12g00924 1078 PRINTS P-type cation-transporting ATPase superfamily signature 487 501 - -
Cmo12g00924 1078 PRINTS P-type cation-transporting ATPase superfamily signature 687 698 - -
Cmo12g00924 1078 PRINTS P-type cation-transporting ATPase superfamily signature 709 719 - -
Cmo12g00924 1078 PRINTS P-type cation-transporting ATPase superfamily signature 794 813 - -
Cmo12g00924 1078 PRINTS P-type cation-transporting ATPase superfamily signature 818 830 - -
Cmo12g00924 1078 CDD P-type_ATPase_Ca_PMCA-like 168 927 - -
Cmo12g00924 1078 Gene3D - 484 839 IPR023214 -
Cmo12g00924 1078 SFLD C1.7: P-type atpase like 469 846 - -
Cmo12g00924 1078 Gene3D - 497 694 IPR023299 GO:0000166
Cmo12g00924 1078 PRINTS Sodium/potassium-transporting ATPase signature 229 249 - -
Cmo12g00924 1078 PRINTS Sodium/potassium-transporting ATPase signature 480 501 - -
Cmo12g00924 1078 PRINTS Sodium/potassium-transporting ATPase signature 605 623 - -
Cmo12g00924 1078 PANTHER CALCIUM-TRANSPORTING ATPASE 20 1067 - -
Cmo12g00924 1078 SUPERFAMILY Calcium ATPase, transmembrane domain M 141 1057 IPR023298 -
Cmo12g00924 1078 Gene3D - 42 98 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00762 Cmo12g00924 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00924 Cmo-Chr12:8557941 Cmo15g00812 Cmo-Chr15:4031016 0 dispersed
Cmo08g00313 Cmo-Chr8:1930481 Cmo12g00924 Cmo-Chr12:8557941 0 transposed
Cmo08g00816 Cmo-Chr8:5159023 Cmo12g00924 Cmo-Chr12:8557941 0 transposed
Cmo12g01137 Cmo-Chr12:10355245 Cmo12g00924 Cmo-Chr12:8557941 0 transposed
Cmo12g00924 Cmo-Chr12:8557941 Cmo05g00762 Cmo-Chr5:4277755 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00924 K01537 - csv:101211703 1870.9