Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00930 ATGAAGACGCCGGCGAACGGTGTCGCCTCCTCCGCCGCCGCGCCTAATTCCTGCGAAGGTGGATTGGAGAAGAAGATCATAAATCCGGAGTTATGGCAAGCGTGCGCCGGTCCACTGGTGAACCTACCGCCGGCCGGTTACCACGTAGTGTATTTCCCTCAGGGCCACAGCGAACAGGTTGCAGCATCTTTGAAGAAAGATGTGGATGCTCAAATCCCAAACTATCCTAATCTTCCTTCTAAGTTACTATGTCTGCTTCATAATGTAACATTACATGCTGACCCTGAAACTGATGAAGTATATGCTCAAATGACACTACAACCAGTTCCTTCTTTTGACAAGGATGCATTGTTGAGATCTGATCTAGCTCTCAAGTCTAATAAGCCTCAACCAGAGTTCTTCTGTAAAACATTGACTGCAAGTGACACAAGCACTCATGGGGGGTTCTCCGTGCCACGCCGTGCTGCTGACAAGATCTTCCCCCCTCTTGATTTCTCAATGCAACCACCTGCACAAGAGCTTGTTGCTAAGGATCTACATGATACTGTATGGACTTTCCGTCACATATATCGAGGTCAACCGAAACGACATTTGCTGACAACTGGATGGAGCTTATTTGTTAGTGGCAAGAGACTTCTAGCTGGTGATTCAGTTTTGTTCATAAGAGATGAAAAACAACAGCTTCTATTGGGCATTAGGCGAGCGAATAGGCAACCGACAACCTTGTCATCATCGGTTTTGTCGAGTGATAGTATGCACATTGGTATTCTTGCAGCTGCCGCCCATGCTGCTGCAAACAACAGCCCTTTTACTGTCTTTTACAACCCAAGGGCAAGTCCTTCAGAATTTGTCATTCCTCTAGCCAAATACTACAAGGCGGTGTCTGCGAACCAAATATCGCTCGGTATGCGCTTCCGAATGATGTTCGAGACTGAAGAGTCTGGAACGAGAAGGTATATGGGCACTATCACAGGTATAAGTGATCTTGATCCTGTCAGATGGAAGGGCTCACAATGGCGTAATCTACAGGTCGGGTGGGACGAGTCGACAGGAGGAGAACGACGAAACCGAGTCTCAATATGGGAGATCGAACCGGTTATTGCTCCCTTTTTCATTTGCCCACCTCCTTTCTTTAGATCGAAACGTCCGAGACAACCAGGAATGCCAGATGATGAGTCCTCTGATTTGGATAGCATATTTAAAAGAACAATGTTTGGTGATGATTTCTGCATGAAAGATCCGCAGGGATATCCCGGCCTAAACTTAGTTCAATGGATGAATATGCAAAACCCTTCACTCTCTAATATGCAGCCAAATTATATGCATTCATTTTCTGGATCTATGCTTCCGAACCTCGGCGGAGTCGATATTTCTCGACAACTTGGCATGTCGAATGCACAAAATCCTCAATCGAATAACATACAGTTCAATGCACAAAGGCTACTTCCTCAAGCTCAACAGTTAGATCAGCTACCTAAGATACCGTCGACTATGAACTCAATGGCATCTGTCGTGCAGCCACCGCAACAGTTCGATGATATCTCTCGACAGACACGGCAGAATGTCGTCTCAAGCCAGATTCAGTCTCAGATAATGCAGCAGCCTCATGGTAATGGGATCTTACAGCAGCAAACCTCTTTGCAAAACCAGCAGCTTCAAAGAAGCCTCCCTCAGAACATGCTAATGCAGCAGCATCAGCAAATTTTGGGGCAGAATCAACAGCAGAATATGAACCAACCACCGATCCCGGATCTGTCGAATCATCCGTTGCAAATGTCTGATAATCAGATTCAAATGCAGATGTTGCAAAAGTTTCAGCAACAGCAGCAATCACTTTTGGCTCAGCAGTCTGTTCTTCAGCCTGCTCAACTTGCCCAACTCCCGGAACAGCAGAGCTTTTCGATATCCATGTCGACTAACCAAACGATCGATGTACCTCACTCTGCCCCAGCTGCAGGCCCTCCTCCATCAGCACAGCAGGCACCAAAGAGCCATAGCTCAAATCAGCATTTGCAGCCAAAATTTCCACAGTTACAGCAACAGCCTCATGATATGTCTAGGCCAATGGGACATAACAATCAGTTCTCTGCAGCTACTAGTAGCGCAATAACAGGAGCAGCAGGGGCAGGTCAATCAGGAATCACTGATGACATACCATCATGCTCCACATCTCCTTCCACAAACAACTGTCCAAGTTTGGTTCAACCTGTAACGAACGGACGCTTACATCGAACCACCGGATTAGTCGACGATGTTGCTCAATCTGCTGCTACAATATTCAGTACCAACACCTTGGATAGCATATCACCAAATGCCAACTTGGTTAAAAACATACCACACAAGGCTGCTGTTAAACCTTCACTGAATATCTCCAAGAATCAAAGCCATGGAGTTTTGACACAACAGACCTTCTTGACCGGTGCTGTTCCACAGACAGAGTTCTTGGACACGTCGTCGTCGACAACGTCGGCTTGTCTTTCTCAGAATGATGCTCAGCTGCAGCAGAATAACATAATGTCTTTCAACTCACAGCCTATGTTGTTTAGAGATGGTTCACAGGATTTGGAGCCACCAACGGATCTTCATAACATTCCTTATGGGACTAATGTTGATGGACAATTGGTAGCACATTTAAATTCAGATCCTTTGATGAACAAAGGCATTGGAGGGTTGGGGAAAGATTTCTCCAATAATTTCTCTTCTGGAGACATGCTTGCCACATATGACGCACAGAAAGATCCTCAACAGGAAATCTCTTCTTCTATAGTTTCACAATCATTTGGTATTCCAGACATGACATTCAACTCCATGGATTCAACTATAAACGACAGTTCCTTCTTAAATAGAAACCAATGGGCCCCTCCGCCTCCTTTTCAACGTATGCGAACCTTTACCAAGGTGTACAAACGTGGAGCTGTTGGGAGATCTATTGATATTACTCGCTACTCGGGCTACGATGAGCTTAAACAAGATCTCGCCCGTCGGTTCGGTATCGAGGGGCAATTGGAGGACAGGCAAAAGATAGGCTGGAAACTTGTTTATGTGGATCATGAAAACGATGTTTTGCTTGTAGGCGACGACCCTTGGGAGGACTTTGTGAACTGTGTACGAAGCATCAAGATCCTCTCCCCACAAGAAGTCCAACAAATGAGCTTGGATGGAGATTTTGGCAACGGTGTCCTACCTAACCAAGCCTGCAGTAGCTCAGATGCTCAAAGTTCATCACTACGGCTACGATTTCCTGTTAGCAATGGAGGAGATATTATAGGCAACCAACACTCACTCAGCAATAGCTTAGTCATTGTCTGGTTAAATTTTCTTGAAACTCTTAGCCTAAGACAACTTTAG 3348 45.64 MKTPANGVASSAAAPNSCEGGLEKKIINPELWQACAGPLVNLPPAGYHVVYFPQGHSEQVAASLKKDVDAQIPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLQPVPSFDKDALLRSDLALKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAADKIFPPLDFSMQPPAQELVAKDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTTLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVSANQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKGSQWRNLQVGWDESTGGERRNRVSIWEIEPVIAPFFICPPPFFRSKRPRQPGMPDDESSDLDSIFKRTMFGDDFCMKDPQGYPGLNLVQWMNMQNPSLSNMQPNYMHSFSGSMLPNLGGVDISRQLGMSNAQNPQSNNIQFNAQRLLPQAQQLDQLPKIPSTMNSMASVVQPPQQFDDISRQTRQNVVSSQIQSQIMQQPHGNGILQQQTSLQNQQLQRSLPQNMLMQQHQQILGQNQQQNMNQPPIPDLSNHPLQMSDNQIQMQMLQKFQQQQQSLLAQQSVLQPAQLAQLPEQQSFSISMSTNQTIDVPHSAPAAGPPPSAQQAPKSHSSNQHLQPKFPQLQQQPHDMSRPMGHNNQFSAATSSAITGAAGAGQSGITDDIPSCSTSPSTNNCPSLVQPVTNGRLHRTTGLVDDVAQSAATIFSTNTLDSISPNANLVKNIPHKAAVKPSLNISKNQSHGVLTQQTFLTGAVPQTEFLDTSSSTTSACLSQNDAQLQQNNIMSFNSQPMLFRDGSQDLEPPTDLHNIPYGTNVDGQLVAHLNSDPLMNKGIGGLGKDFSNNFSSGDMLATYDAQKDPQQEISSSIVSQSFGIPDMTFNSMDSTINDSSFLNRNQWAPPPPFQRMRTFTKVYKRGAVGRSIDITRYSGYDELKQDLARRFGIEGQLEDRQKIGWKLVYVDHENDVLLVGDDPWEDFVNCVRSIKILSPQEVQQMSLDGDFGNGVLPNQACSSSDAQSSSLRLRFPVSNGGDIIGNQHSLSNSLVIVWLNFLETLSLRQL 1115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8645593 8653456 + CmoCh12G009300.1 Cmo12g00930 393618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00930 1115 Gene3D - 298 368 - -
Cmo12g00930 1115 ProSiteProfiles PB1 domain profile. 962 1047 IPR000270 GO:0005515
Cmo12g00930 1115 MobiDBLite consensus disorder prediction 567 590 - -
Cmo12g00930 1115 MobiDBLite consensus disorder prediction 706 733 - -
Cmo12g00930 1115 CDD B3_DNA 133 225 IPR003340 GO:0003677
Cmo12g00930 1115 PANTHER AUXIN RESPONSE FACTOR 1 1069 - -
Cmo12g00930 1115 MobiDBLite consensus disorder prediction 715 733 - -
Cmo12g00930 1115 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Cmo12g00930 1115 SUPERFAMILY DNA-binding pseudobarrel domain 123 263 IPR015300 -
Cmo12g00930 1115 Gene3D - 958 1051 - -
Cmo12g00930 1115 SUPERFAMILY CAD & PB1 domains 975 1041 - -
Cmo12g00930 1115 Pfam AUX/IAA family 960 1047 IPR033389 -
Cmo12g00930 1115 SMART B3_2 134 236 IPR003340 GO:0003677
Cmo12g00930 1115 Pfam Auxin response factor 260 343 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo12g00930 1115 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1069 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo12g00930 1115 MobiDBLite consensus disorder prediction 643 672 - -
Cmo12g00930 1115 Pfam B3 DNA binding domain 134 235 IPR003340 GO:0003677
Cmo12g00930 1115 Gene3D - 132 235 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01425 Cmo-Chr5:10923211 Cmo12g00930 Cmo-Chr12:8645593 0 dispersed
Cmo12g00930 Cmo-Chr12:8645593 Cmo12g01366 Cmo-Chr12:11717942 0 dispersed
Cmo12g00930 Cmo-Chr12:8645593 Cmo05g00767 Cmo-Chr5:4338402 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10759 PF02309 AUX_IAA 2.10E-07 CL0072 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00930 - - csv:101205542 1739.16