Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo12g00930 | ATGAAGACGCCGGCGAACGGTGTCGCCTCCTCCGCCGCCGCGCCTAATTCCTGCGAAGGTGGATTGGAGAAGAAGATCATAAATCCGGAGTTATGGCAAGCGTGCGCCGGTCCACTGGTGAACCTACCGCCGGCCGGTTACCACGTAGTGTATTTCCCTCAGGGCCACAGCGAACAGGTTGCAGCATCTTTGAAGAAAGATGTGGATGCTCAAATCCCAAACTATCCTAATCTTCCTTCTAAGTTACTATGTCTGCTTCATAATGTAACATTACATGCTGACCCTGAAACTGATGAAGTATATGCTCAAATGACACTACAACCAGTTCCTTCTTTTGACAAGGATGCATTGTTGAGATCTGATCTAGCTCTCAAGTCTAATAAGCCTCAACCAGAGTTCTTCTGTAAAACATTGACTGCAAGTGACACAAGCACTCATGGGGGGTTCTCCGTGCCACGCCGTGCTGCTGACAAGATCTTCCCCCCTCTTGATTTCTCAATGCAACCACCTGCACAAGAGCTTGTTGCTAAGGATCTACATGATACTGTATGGACTTTCCGTCACATATATCGAGGTCAACCGAAACGACATTTGCTGACAACTGGATGGAGCTTATTTGTTAGTGGCAAGAGACTTCTAGCTGGTGATTCAGTTTTGTTCATAAGAGATGAAAAACAACAGCTTCTATTGGGCATTAGGCGAGCGAATAGGCAACCGACAACCTTGTCATCATCGGTTTTGTCGAGTGATAGTATGCACATTGGTATTCTTGCAGCTGCCGCCCATGCTGCTGCAAACAACAGCCCTTTTACTGTCTTTTACAACCCAAGGGCAAGTCCTTCAGAATTTGTCATTCCTCTAGCCAAATACTACAAGGCGGTGTCTGCGAACCAAATATCGCTCGGTATGCGCTTCCGAATGATGTTCGAGACTGAAGAGTCTGGAACGAGAAGGTATATGGGCACTATCACAGGTATAAGTGATCTTGATCCTGTCAGATGGAAGGGCTCACAATGGCGTAATCTACAGGTCGGGTGGGACGAGTCGACAGGAGGAGAACGACGAAACCGAGTCTCAATATGGGAGATCGAACCGGTTATTGCTCCCTTTTTCATTTGCCCACCTCCTTTCTTTAGATCGAAACGTCCGAGACAACCAGGAATGCCAGATGATGAGTCCTCTGATTTGGATAGCATATTTAAAAGAACAATGTTTGGTGATGATTTCTGCATGAAAGATCCGCAGGGATATCCCGGCCTAAACTTAGTTCAATGGATGAATATGCAAAACCCTTCACTCTCTAATATGCAGCCAAATTATATGCATTCATTTTCTGGATCTATGCTTCCGAACCTCGGCGGAGTCGATATTTCTCGACAACTTGGCATGTCGAATGCACAAAATCCTCAATCGAATAACATACAGTTCAATGCACAAAGGCTACTTCCTCAAGCTCAACAGTTAGATCAGCTACCTAAGATACCGTCGACTATGAACTCAATGGCATCTGTCGTGCAGCCACCGCAACAGTTCGATGATATCTCTCGACAGACACGGCAGAATGTCGTCTCAAGCCAGATTCAGTCTCAGATAATGCAGCAGCCTCATGGTAATGGGATCTTACAGCAGCAAACCTCTTTGCAAAACCAGCAGCTTCAAAGAAGCCTCCCTCAGAACATGCTAATGCAGCAGCATCAGCAAATTTTGGGGCAGAATCAACAGCAGAATATGAACCAACCACCGATCCCGGATCTGTCGAATCATCCGTTGCAAATGTCTGATAATCAGATTCAAATGCAGATGTTGCAAAAGTTTCAGCAACAGCAGCAATCACTTTTGGCTCAGCAGTCTGTTCTTCAGCCTGCTCAACTTGCCCAACTCCCGGAACAGCAGAGCTTTTCGATATCCATGTCGACTAACCAAACGATCGATGTACCTCACTCTGCCCCAGCTGCAGGCCCTCCTCCATCAGCACAGCAGGCACCAAAGAGCCATAGCTCAAATCAGCATTTGCAGCCAAAATTTCCACAGTTACAGCAACAGCCTCATGATATGTCTAGGCCAATGGGACATAACAATCAGTTCTCTGCAGCTACTAGTAGCGCAATAACAGGAGCAGCAGGGGCAGGTCAATCAGGAATCACTGATGACATACCATCATGCTCCACATCTCCTTCCACAAACAACTGTCCAAGTTTGGTTCAACCTGTAACGAACGGACGCTTACATCGAACCACCGGATTAGTCGACGATGTTGCTCAATCTGCTGCTACAATATTCAGTACCAACACCTTGGATAGCATATCACCAAATGCCAACTTGGTTAAAAACATACCACACAAGGCTGCTGTTAAACCTTCACTGAATATCTCCAAGAATCAAAGCCATGGAGTTTTGACACAACAGACCTTCTTGACCGGTGCTGTTCCACAGACAGAGTTCTTGGACACGTCGTCGTCGACAACGTCGGCTTGTCTTTCTCAGAATGATGCTCAGCTGCAGCAGAATAACATAATGTCTTTCAACTCACAGCCTATGTTGTTTAGAGATGGTTCACAGGATTTGGAGCCACCAACGGATCTTCATAACATTCCTTATGGGACTAATGTTGATGGACAATTGGTAGCACATTTAAATTCAGATCCTTTGATGAACAAAGGCATTGGAGGGTTGGGGAAAGATTTCTCCAATAATTTCTCTTCTGGAGACATGCTTGCCACATATGACGCACAGAAAGATCCTCAACAGGAAATCTCTTCTTCTATAGTTTCACAATCATTTGGTATTCCAGACATGACATTCAACTCCATGGATTCAACTATAAACGACAGTTCCTTCTTAAATAGAAACCAATGGGCCCCTCCGCCTCCTTTTCAACGTATGCGAACCTTTACCAAGGTGTACAAACGTGGAGCTGTTGGGAGATCTATTGATATTACTCGCTACTCGGGCTACGATGAGCTTAAACAAGATCTCGCCCGTCGGTTCGGTATCGAGGGGCAATTGGAGGACAGGCAAAAGATAGGCTGGAAACTTGTTTATGTGGATCATGAAAACGATGTTTTGCTTGTAGGCGACGACCCTTGGGAGGACTTTGTGAACTGTGTACGAAGCATCAAGATCCTCTCCCCACAAGAAGTCCAACAAATGAGCTTGGATGGAGATTTTGGCAACGGTGTCCTACCTAACCAAGCCTGCAGTAGCTCAGATGCTCAAAGTTCATCACTACGGCTACGATTTCCTGTTAGCAATGGAGGAGATATTATAGGCAACCAACACTCACTCAGCAATAGCTTAGTCATTGTCTGGTTAAATTTTCTTGAAACTCTTAGCCTAAGACAACTTTAG | 3348 | 45.64 | MKTPANGVASSAAAPNSCEGGLEKKIINPELWQACAGPLVNLPPAGYHVVYFPQGHSEQVAASLKKDVDAQIPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLQPVPSFDKDALLRSDLALKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAADKIFPPLDFSMQPPAQELVAKDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTTLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVSANQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKGSQWRNLQVGWDESTGGERRNRVSIWEIEPVIAPFFICPPPFFRSKRPRQPGMPDDESSDLDSIFKRTMFGDDFCMKDPQGYPGLNLVQWMNMQNPSLSNMQPNYMHSFSGSMLPNLGGVDISRQLGMSNAQNPQSNNIQFNAQRLLPQAQQLDQLPKIPSTMNSMASVVQPPQQFDDISRQTRQNVVSSQIQSQIMQQPHGNGILQQQTSLQNQQLQRSLPQNMLMQQHQQILGQNQQQNMNQPPIPDLSNHPLQMSDNQIQMQMLQKFQQQQQSLLAQQSVLQPAQLAQLPEQQSFSISMSTNQTIDVPHSAPAAGPPPSAQQAPKSHSSNQHLQPKFPQLQQQPHDMSRPMGHNNQFSAATSSAITGAAGAGQSGITDDIPSCSTSPSTNNCPSLVQPVTNGRLHRTTGLVDDVAQSAATIFSTNTLDSISPNANLVKNIPHKAAVKPSLNISKNQSHGVLTQQTFLTGAVPQTEFLDTSSSTTSACLSQNDAQLQQNNIMSFNSQPMLFRDGSQDLEPPTDLHNIPYGTNVDGQLVAHLNSDPLMNKGIGGLGKDFSNNFSSGDMLATYDAQKDPQQEISSSIVSQSFGIPDMTFNSMDSTINDSSFLNRNQWAPPPPFQRMRTFTKVYKRGAVGRSIDITRYSGYDELKQDLARRFGIEGQLEDRQKIGWKLVYVDHENDVLLVGDDPWEDFVNCVRSIKILSPQEVQQMSLDGDFGNGVLPNQACSSSDAQSSSLRLRFPVSNGGDIIGNQHSLSNSLVIVWLNFLETLSLRQL | 1115 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 8645593 | 8653456 | + | CmoCh12G009300.1 | Cmo12g00930 | 393618 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo12g00930 | 1115 | Gene3D | - | 298 | 368 | - | - | |
Cmo12g00930 | 1115 | ProSiteProfiles | PB1 domain profile. | 962 | 1047 | IPR000270 | GO:0005515 | |
Cmo12g00930 | 1115 | MobiDBLite | consensus disorder prediction | 567 | 590 | - | - | |
Cmo12g00930 | 1115 | MobiDBLite | consensus disorder prediction | 706 | 733 | - | - | |
Cmo12g00930 | 1115 | CDD | B3_DNA | 133 | 225 | IPR003340 | GO:0003677 | |
Cmo12g00930 | 1115 | PANTHER | AUXIN RESPONSE FACTOR | 1 | 1069 | - | - | |
Cmo12g00930 | 1115 | MobiDBLite | consensus disorder prediction | 715 | 733 | - | - | |
Cmo12g00930 | 1115 | ProSiteProfiles | B3 DNA-binding domain profile. | 134 | 236 | IPR003340 | GO:0003677 | |
Cmo12g00930 | 1115 | SUPERFAMILY | DNA-binding pseudobarrel domain | 123 | 263 | IPR015300 | - | |
Cmo12g00930 | 1115 | Gene3D | - | 958 | 1051 | - | - | |
Cmo12g00930 | 1115 | SUPERFAMILY | CAD & PB1 domains | 975 | 1041 | - | - | |
Cmo12g00930 | 1115 | Pfam | AUX/IAA family | 960 | 1047 | IPR033389 | - | |
Cmo12g00930 | 1115 | SMART | B3_2 | 134 | 236 | IPR003340 | GO:0003677 | |
Cmo12g00930 | 1115 | Pfam | Auxin response factor | 260 | 343 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Cmo12g00930 | 1115 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 1 | 1069 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cmo12g00930 | 1115 | MobiDBLite | consensus disorder prediction | 643 | 672 | - | - | |
Cmo12g00930 | 1115 | Pfam | B3 DNA binding domain | 134 | 235 | IPR003340 | GO:0003677 | |
Cmo12g00930 | 1115 | Gene3D | - | 132 | 235 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g01425 | Cmo-Chr5:10923211 | Cmo12g00930 | Cmo-Chr12:8645593 | 0 | dispersed | |
Cmo12g00930 | Cmo-Chr12:8645593 | Cmo12g01366 | Cmo-Chr12:11717942 | 0 | dispersed | |
Cmo12g00930 | Cmo-Chr12:8645593 | Cmo05g00767 | Cmo-Chr5:4338402 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10759 | PF02309 | AUX_IAA | 2.10E-07 | CL0072 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo12g00930 | - | - | csv:101205542 | 1739.16 |