Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00931 ATGGGGCATTCACCAACAAAGCTTGCATTCCTTAGCTTAGTTTCTCTACTAGTTTTGGGGTTGCTCACCAAGTTCTTGTTCATCTCCTTAAACATCCTTTTAATCACTCTTTCCATTGCTTTTGTCTTTGCTATCATACTCTTCTCCAATTCCTCCAATACTCCTCCTGGTCCTCTCCCTATTCCTATCTTCGGGAACTGGCTCCAAGTCGGGAACGACCTCAACCATCGTGTTCTTGCGTCGTTAGCGCAGAAATATGGCTCGGTGTTCCGACTCAAACTCGGTTACAAGAATCTAGTCGTGGTGTCTGATGTTGAGCTTGCTAGACAAGTTCTTCATGCTCAAGGTGCGGAGTTTGGCTCTCGTCCTCGAAATGTCGTCTTCGACGTTTTCACTAGTAATGGACAAGATATGGTGTTCACGATTTATGGTGAGCATTGGCGTAAAATGCGTAGAATCATGACACAACCACTTTTTACGAACAATGTTGTGCATACCTATAGTGGTATGTGGGAGGAAGAAATGGATTTGGTTGTTCGTGATCTTAAGAATAACTCGAAGATGAGATCCGAAGGGTTAGTCATAAGAAAGCCCTTGCAATTGATGATGTACAATATCATGTATCGAATGATGTTTGATTCGAAGTTTGAATCTCAAGACGATCCTTTATACATTGAGGCGACTCGATTGAACTCGGAAAGAATGCGATTGGCACAAAGTTCGGAATATAATTATGGAGATTTCATTCCTTTCCTCAAACCCTTTTTGAGGGGTTACTTGAACAAGTGCAAGGAGTTGAGAAATGAGAGAAAAATTATGGAAGCTAACGGAGACGAGCACAAAACAAGTTGCGCCATAGATCATATTATAAACGCTCAACTAAAAGGAGAGATTAGTGAAGAAAATGTTTTATACATCATAGAAAACATCAACGTTGCAGCAATACAAACAACACTTCGATCAATGGAGTGGGCAACAGTCGAGTTGGTGAACCATCCAACCGTCCAACAAAAGATTCGAGACGAAATCTCAACAGTCTTGAAAGAAATGAAAGTCACACCATCGAACTTACATGAGTTACCCTATCTACAAGCCGTAGTGAAAGAGACATTGAGACTACGCATACCGGTACCATTATTAGTACCACATATGAACTTAAAAGAAGCCAAGCTTGGAGGCTACACAATTCCAAAGGAGTCTAAGGTGTTGGTGAATGTATGGTGGTTGGGCAATAACCCGGCATGGTGGGAAAATCCAGAAGAGTTCAGGCCAGAGAGGTTCCTTCAAGAAGAAAGTAGCACAGAAGTTACAGTAGGAGGTAACGTCGACTTTCGACTCATACCATTTGGCGTCGGAAGGAGAAGTTGCCCCGGGATCGTTGTGGCAATGCCAATCTTGGGAATGTTCATTGCTAAGTTAGTAACCAATTTTGAAATGAAGCCTCCAAATGGGATGGAGAAGATTGATGTGCAAGAAAAAGGAGGGCCATTTAGTTTGTATATTGCGAACCCGTCGACCGTGGCATTTGAACCTATAAGTGTATAG 1545 42.27 MGHSPTKLAFLSLVSLLVLGLLTKFLFISLNILLITLSIAFVFAIILFSNSSNTPPGPLPIPIFGNWLQVGNDLNHRVLASLAQKYGSVFRLKLGYKNLVVVSDVELARQVLHAQGAEFGSRPRNVVFDVFTSNGQDMVFTIYGEHWRKMRRIMTQPLFTNNVVHTYSGMWEEEMDLVVRDLKNNSKMRSEGLVIRKPLQLMMYNIMYRMMFDSKFESQDDPLYIEATRLNSERMRLAQSSEYNYGDFIPFLKPFLRGYLNKCKELRNERKIMEANGDEHKTSCAIDHIINAQLKGEISEENVLYIIENINVAAIQTTLRSMEWATVELVNHPTVQQKIRDEISTVLKEMKVTPSNLHELPYLQAVVKETLRLRIPVPLLVPHMNLKEAKLGGYTIPKESKVLVNVWWLGNNPAWWENPEEFRPERFLQEESSTEVTVGGNVDFRLIPFGVGRRSCPGIVVAMPILGMFIAKLVTNFEMKPPNGMEKIDVQEKGGPFSLYIANPSTVAFEPISV 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8654799 8657348 - CmoCh12G009310.1 Cmo12g00931 393619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00931 514 Coils Coil 256 276 - -
Cmo12g00931 514 Pfam Cytochrome P450 55 494 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo12g00931 514 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 449 458 IPR017972 GO:0005506|GO:0016705
Cmo12g00931 514 PRINTS P450 superfamily signature 365 376 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo12g00931 514 PRINTS P450 superfamily signature 447 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo12g00931 514 PRINTS P450 superfamily signature 313 330 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo12g00931 514 SUPERFAMILY Cytochrome P450 55 496 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo12g00931 514 PANTHER OS02G0467000 PROTEIN 2 513 - -
Cmo12g00931 514 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 2 513 - -
Cmo12g00931 514 Gene3D Cytochrome P450 48 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo12g00931 514 PRINTS E-class P450 group I signature 202 220 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo12g00931 514 PRINTS E-class P450 group I signature 302 319 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo12g00931 514 PRINTS E-class P450 group I signature 364 382 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo12g00931 514 PRINTS E-class P450 group I signature 83 102 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo12g00931 514 PRINTS E-class P450 group I signature 322 348 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo12g00931 514 PRINTS E-class P450 group I signature 446 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo12g00931 514 PRINTS E-class P450 group I signature 107 128 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo12g00931 514 PRINTS E-class P450 group I signature 456 479 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo12g00931 514 PRINTS E-class P450 group I signature 405 429 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00931 Cmo-Chr12:8654799 Cmo20g00331 Cmo-Chr20:1614881 0 dispersed
Cmo12g00931 Cmo-Chr12:8654799 Cmo05g00770 Cmo-Chr5:4362984 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00931 K00487 - csv:101205775 819.305