Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00936 ATGGCCAGAGGCGGAGCTCACAAGAAAGACGAATCCGTAGCGGTAGCGATCGATAAAGACAAATTCAGTCAACAGGCTTTGAAATGGACGATTGAACGGCTTCTTAGCAGAGGCCAAGTTCTTACTCTGCTTCACGTCAAACACAAACCGTCGCATTCGACGACGAACGTCGGTTCCTATTCCGATTCGGATGACGCCGTTGCTCATAAACAGCAGGTTGATAATCAAGCCCATCAGTTCTTCCTCCCCTTTCGTTGCTTCTGCACGCGAAGCAATATACCATGCAATGAAGTGACGTTGGAGGAGGGAGATATTTCAAAAGCATTAATCAATTATGTCAACAAAAATGTTATTGACGTTTTAGTCCTTGGTGCTCCTTCAAGAACTGGCCTTGTCAAACGATTCAAGTCGGACATCCCAAGTATCGTGTCGAAAGGAGCACCAGACTTCTGCACAGTTTACATTATTGGGAACAAAGGCAAGGTCTCTTCAATGCGACAAGCTACATCTCCAGCACCTGCAAAGCCTATTTCTACGTCGCACAACCAGCCACAACCCGCCACACGCCCTCAATTGTTGCATCAGCTCACCAACGCCTCCGAGGTATCGGTCGAGCACCCGACCATCCTGCGTTCCCAACCCTCTAGACATTTAGAGACTCAAGACAGCTTAGCATCAAATCCACCTTTTCGTGCCATTCACGAAGATTTTGAAATCAAGTCGCCGTTTAATCGGCCAGGGTCGAGGGCTTCGATGGGGAAAGGACAGGACACATCCACGGCGGATTCCGACATATCGTTCGTGAGCAGTGGTAGGCAAAGCTTAGATCGTGGGAACTCGCCGGCGTGGAACTCCGGCACCGGGGACTCGTATCGGCTTTCAAACGGGTCGGAAACTTCGAGCCCGGGTTCAGCCTCGCCTTCGCCCATGTTGGGAATGGGAGGAATGAGGTCCATTGATAGTAATAATAACTCCTCTTATTCTAACCCTTACTCTCATGAAATGTCCTCTGCCTCGGAGAGTGAGACCTCTTGGGCTTCCCAATCTCATGCTCAGGAGGATGTTGAGGCTGAGATGAGGAGGCTGAAATTGGAGCTCAAACAAACCATGGACATGTACAGTACAGCCTGCAAAGAAGCCCTAAACGCCAAGCAAAAGGCGAGTGAGCTCCATCGCTGGAAAATGGAAGAAGAACACAGACTCGAAGAGGCAAGAATGGCGGAAGAAGCAGCATTAGCAATAGCAGAGCAGGAGAAGTTGAAATGCAAAGCGGCATTGCAGGCAGCCGAACTTGCACAAAGAAGCGCAGTTCAGGAAGCGAGGAAAAGAGCAAACGTCGAGAAACTTGCTGTCATGGAAGCAGAGGAAACCAAGAAAGCACTTGAAGGATTCGGCCATGGCGATATTGGTTACAGAAGGTACTCGATCCAGGAAATCGAAACCGCTACGAATGGCTTCTCTGCTGCTTTGAAGATCGGTGAAGGCGGTTATGGTCCAGTTTACCGTGGAGAACTCGACCACACGCAGGTAGCGATTAAGGTCCTCCGTCCGGATGCCGCTCAAGGAAGATCGCAATTTCAGCGAGAGGTTGAGGTTTTAAGTTGTATTCGACATCCAAATATGGTTCTCCTCCTTGGAGCTTGTCCTGAGAACGGTTGTTTAGTTTACGAATTCATGGCGAACGGAAGCTTAGAGGACTGTCTCTTCCGAAAACCAGAGGATCCTGTTCTTCCATGGCAGTTACGTTTCCGAATCGCGGAGGAAATCGCGACCGGACTTCTTTTCTTGCATCAAACCAGACCAGAGCCGATCGTGCATCGAGATCTGAAACCAGGAAACATTTTGCTAGATCGGAACTACGTGAGTAAAATCAGCGACGTAGGACTGGCGAGGCTTGTGCCTCCATCGGTAGCGAATTCGGTGACTCAGTATCGAATGACGGCGACGGCAGGGACTTTCTTCTACATCGATCCAGAGTATCAGCAAACAGGATTGCTAGGGATTAAATCAGATGTTTACTCGCTTGGTGTGATGCTTTTGCAAATAATCACGGCGAAGCCGCCAATCGGACTAGCGCATAACGTGGAGAGAGCGATTGAGAAGGGGAAGTTTGCGGAGATGCTTGATCCGGATGTTAAGGACTGGCCGGTTGAAGAGGCGTTGAAGTTTGCGAAGCTTTCGATTCAATGTGCAGAGATGAGGAAGAGAGATCGGCCGGACCTTGGGAAGGTGGTGCTCCCGGAGCTTAGTCGATTGAGAGCCATGGCGGAAGAGAGTATGGGATTTCAACCGTTCAGTATCTGTGATTCGCCATGTATGAGCCAGGCTTCCTTTTCACAGGAGCAGTTTAGTCTTCATCAAGGGCTTGATGAATGTGAGAGCTCATACTGCCAATCAGGAAGCAGCACGTCATCATATTCAGACAGAAGATCATGGCTGAATTAA 2445 49.45 MARGGAHKKDESVAVAIDKDKFSQQALKWTIERLLSRGQVLTLLHVKHKPSHSTTNVGSYSDSDDAVAHKQQVDNQAHQFFLPFRCFCTRSNIPCNEVTLEEGDISKALINYVNKNVIDVLVLGAPSRTGLVKRFKSDIPSIVSKGAPDFCTVYIIGNKGKVSSMRQATSPAPAKPISTSHNQPQPATRPQLLHQLTNASEVSVEHPTILRSQPSRHLETQDSLASNPPFRAIHEDFEIKSPFNRPGSRASMGKGQDTSTADSDISFVSSGRQSLDRGNSPAWNSGTGDSYRLSNGSETSSPGSASPSPMLGMGGMRSIDSNNNSSYSNPYSHEMSSASESETSWASQSHAQEDVEAEMRRLKLELKQTMDMYSTACKEALNAKQKASELHRWKMEEEHRLEEARMAEEAALAIAEQEKLKCKAALQAAELAQRSAVQEARKRANVEKLAVMEAEETKKALEGFGHGDIGYRRYSIQEIETATNGFSAALKIGEGGYGPVYRGELDHTQVAIKVLRPDAAQGRSQFQREVEVLSCIRHPNMVLLLGACPENGCLVYEFMANGSLEDCLFRKPEDPVLPWQLRFRIAEEIATGLLFLHQTRPEPIVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVANSVTQYRMTATAGTFFYIDPEYQQTGLLGIKSDVYSLGVMLLQIITAKPPIGLAHNVERAIEKGKFAEMLDPDVKDWPVEEALKFAKLSIQCAEMRKRDRPDLGKVVLPELSRLRAMAEESMGFQPFSICDSPCMSQASFSQEQFSLHQGLDECESSYCQSGSSTSSYSDRRSWLN 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8699795 8707224 - CmoCh12G009360.1 Cmo12g00936 393624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00936 814 Gene3D Phosphorylase Kinase; domain 1 468 558 - -
Cmo12g00936 814 MobiDBLite consensus disorder prediction 251 307 - -
Cmo12g00936 814 CDD STK_N 12 160 - -
Cmo12g00936 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672|GO:0006468
Cmo12g00936 814 MobiDBLite consensus disorder prediction 795 814 - -
Cmo12g00936 814 MobiDBLite consensus disorder prediction 165 188 - -
Cmo12g00936 814 SMART serkin_6 486 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00936 814 MobiDBLite consensus disorder prediction 200 228 - -
Cmo12g00936 814 Gene3D HUPs 11 155 IPR014729 -
Cmo12g00936 814 MobiDBLite consensus disorder prediction 317 349 - -
Cmo12g00936 814 Pfam Protein tyrosine and serine/threonine kinase 491 744 IPR001245 GO:0004672|GO:0006468
Cmo12g00936 814 Coils Coil 352 372 - -
Cmo12g00936 814 Coils Coil 398 432 - -
Cmo12g00936 814 Gene3D Transferase(Phosphotransferase) domain 1 559 763 - -
Cmo12g00936 814 MobiDBLite consensus disorder prediction 200 227 - -
Cmo12g00936 814 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 12 148 - -
Cmo12g00936 814 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 8 783 - -
Cmo12g00936 814 Pfam Universal stress protein family 13 135 IPR006016 -
Cmo12g00936 814 PANTHER OS02G0152300 PROTEIN 8 783 - -
Cmo12g00936 814 Coils Coil 437 457 - -
Cmo12g00936 814 SUPERFAMILY Protein kinase-like (PK-like) 469 745 IPR011009 -
Cmo12g00936 814 MobiDBLite consensus disorder prediction 241 349 - -
Cmo12g00936 814 ProSiteProfiles Protein kinase domain profile. 486 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00936 814 CDD STKc_IRAK 492 745 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00936 Cmo-Chr12:8699795 Cmo19g00725 Cmo-Chr19:7529137 0 dispersed
Cmo12g00936 Cmo-Chr12:8699795 Cmo05g00773 Cmo-Chr5:4387340 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74732 PF07714 PK_Tyr_Ser-Thr 2.30E-38 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00936 - - csv:101203771 1023.46