Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00939 ATGTTGGAGGGTGGTCAAAAATTCACTGGAATGATCGATTTGAACGAGCATGCATATGATCTATCGCAAGGGTTTTACCATAAACTTGGTGAGGGAACCAACATGTCTATTGACTCGTTTGCAAGCTTGCAAACGAGCAATGATGGAGGGTCTGTTGCTATGTCTTTAGATAACAGCAGTGTGGGATCAAATGAATCTCACACTCGGATCTTAAATCACCAAGGTTTGCGACGGCGTGCAAATGACAACCAGACTTTTCAACATAGCGTTAACCGTCGTGGAAGAGTTACACACCACCTGAGTGATGATGCACTGGCCCGAGCTTTATTTGATACTAATACACCTACCCAGGGTCTTGAAAATTTTGAGAAGTGGATTCTTGATTTAAGGAAGCTCAATATGGGGGAGGCTTTTGCTCAAGGTGCCTTTGGAAAACTGTACAGAGGTACTTATGATGGGGAAGATGTTGCTATCAAGATCTTGGAGAGGCCTGAGAATGACCTGGAGAAGGCCCAGTTAATGGAGCAACAATATCAGCAGGAGGTGATGATGCTTGCTACTCTGAAGCACCCAAACATTGTCAGGTTTATTGGAGCATGTCATAAGCCAATGGTTTGGTGCATTGTTACCGAATATGCAAAGGGTGGTTCAGTTCGACAGTTCCTGATGAAGCGACAAAGTCGCTCTGTCCCCCTGAAATTAGCTGTCAAACAAGCTTTGGATGTTGCCAGAGGGATGGAATATGTTCATGGCCTTGGATTGATCCACAGGGACTTGAAATCAGACAATCTTTTGATTTTTGCAGATAAGTCCATCAAAGTTGCTGACTTTGGAGTGGCCCGGATTGAAGTGCAGACTGAGGGAATGACACCCGAGACTGGAACCTACCGCTGGATGGCTCCGGAGATGATCCAACACAGGCCTTACACTCAAAAGGTGGACCTGTACAGCTTTGGCATAGTTCTCTGGGAGCTGATAACTGGAATGCTTCCATTCCAGAACATGACTGCCGTTCAGGCCGCCTTTGCAGTTGTCAACAAGGGTGTCCGTCCTATCATTCCCAATGATTGCTTACCTGTTTTGAGCGACATCATGACCCGATGCTGGGATGCCAACCCCGATGTTAGACCATCATTTACTGAGGTTGTCAGAATGCTTGAGAATGCACAGAATGAGATCATGACGACCGTGCGCAAGGCTCGTTTCAGGTGTTGCATGAGGCAGCCAATGACAACAGACTGA 1242 46.38 MLEGGQKFTGMIDLNEHAYDLSQGFYHKLGEGTNMSIDSFASLQTSNDGGSVAMSLDNSSVGSNESHTRILNHQGLRRRANDNQTFQHSVNRRGRVTHHLSDDALARALFDTNTPTQGLENFEKWILDLRKLNMGEAFAQGAFGKLYRGTYDGEDVAIKILERPENDLEKAQLMEQQYQQEVMMLATLKHPNIVRFIGACHKPMVWCIVTEYAKGGSVRQFLMKRQSRSVPLKLAVKQALDVARGMEYVHGLGLIHRDLKSDNLLIFADKSIKVADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDLYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKGVRPIIPNDCLPVLSDIMTRCWDANPDVRPSFTEVVRMLENAQNEIMTTVRKARFRCCMRQPMTTD 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8727422 8731529 - CmoCh12G009390.1 Cmo12g00939 393627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00939 413 PANTHER SERINE-THREONINE PROTEIN KINASE 2 404 - -
Cmo12g00939 413 SUPERFAMILY Protein kinase-like (PK-like) 117 386 IPR011009 -
Cmo12g00939 413 ProSiteProfiles Protein kinase domain profile. 132 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00939 413 SMART serkin_6 132 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00939 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Cmo12g00939 413 CDD STKc_MAP3K-like 139 386 - -
Cmo12g00939 413 Gene3D Phosphorylase Kinase; domain 1 121 214 - -
Cmo12g00939 413 Pfam Protein tyrosine and serine/threonine kinase 133 386 IPR001245 GO:0004672|GO:0006468
Cmo12g00939 413 Gene3D Transferase(Phosphotransferase) domain 1 215 410 - -
Cmo12g00939 413 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 2 404 - -
Cmo12g00939 413 PRINTS Tyrosine kinase catalytic domain signature 210 223 IPR001245 GO:0004672|GO:0006468
Cmo12g00939 413 PRINTS Tyrosine kinase catalytic domain signature 248 266 IPR001245 GO:0004672|GO:0006468
Cmo12g00939 413 PRINTS Tyrosine kinase catalytic domain signature 294 304 IPR001245 GO:0004672|GO:0006468
Cmo12g00939 413 PRINTS Tyrosine kinase catalytic domain signature 313 335 IPR001245 GO:0004672|GO:0006468
Cmo12g00939 413 PRINTS Tyrosine kinase catalytic domain signature 357 379 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00939 Cmo-Chr12:8727422 Cmo13g00921 Cmo-Chr13:8137683 8.78E-99 dispersed
Cmo19g00771 Cmo-Chr19:7783849 Cmo12g00939 Cmo-Chr12:8727422 2.19E-86 dispersed
Cmo12g00939 Cmo-Chr12:8727422 Cmo05g00777 Cmo-Chr5:4440030 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74733 PF07714 PK_Tyr_Ser-Thr 9.30E-66 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00939 - - csv:101213713 818.92