Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00962 ATGGGGACAGAGCTTATACGAGTTTCTGTGGAAGAAGATAGTGATGACTTTCCATCAGTTCCACCAGGTTTCGAGTCATATATATCCTTTCCTCTAGGGAAAGCGCACAATCATGAAAAAGCTCACGTCCCTGTTAGTTTGCCGACGACCATCTCCGAGTCACAACCAGTTAAAGTGGAAACTGAGGTAGAAATTGCCGATGTTCCAAAAGTAACAAGGGCCCTCCGACGTAAACCATGTATAAACTATAGACAATTTGAGTACTGTTCCGACGACAAGCTTGATACTAAGCGCGTTGATCAGGTTGTTGCGAGATGGCGTCCAGAAGAATCCTGCCGACCGGACCTTGAGGCCGCTCCTGTGTTTTACCCAAATGAAGAGGAATTTGAAGATACTTTGACATATATAGCAAGCATACGAACAGAAGCAGAACCATATGGGATTTGTCGTATTGTCCCGCCATCTTCTTGGAAACCTCCATGTCCGCTGAAGCAGAAACATATTTGGGAGAATTCTAAATTTGCAACTCGTGTCCAAAGGATCGATAAGCTTCAGAATCGGGATTCAATAAGAAAGAACTTTAGAGTTTGCAATCAAATGAGACGGAAAAGGAGGAGGGTTAATCGAAAGGGGGTTGATGTTACCACCTTAAATGGAAAAAATGAAGATGCGGGGTCTCGTTCGACAGAAAGATTTGGATTTGATCCTGGTACAGATTTTACTTTAGAATCGTTTAAAAAATATGCCGATGACTTTAAGTCTCAGTATTTTAGTAAACCACTCCATGATACCGCTAAGGGATGTAATCCCTCCATGCTGCAAGAGAACGAGCATTGGAAACCGTCTGTGGAAAATATTGAGGGCGAATATTGGCGGATGGTAGAGAAGCCAACGGAAGAGATCGAGGTGCTCTATGGGGCTGATTTAGAAACTGGAGAGTTTGGCAGCGGTTTTCCGAAAAGTTGCTGTCAAGAGGGCTATACATCAGATGACGATAAGTATGTAAAATCTGGCTGGAACCTGAATAACTTTCCGAAGCTTCCCGGTTCGGTCCTTAGCTATGAGAGCAGTAATATATCTGGAGTCTTGGTACCATGGCTGTATATTGGGATGTGCTTTTCGTCCTTTTGCTGGCACGTTGAAGATCACCACCTCTACTCTCTGAATTACTTGCACTGGGGAGATCCGAAAGTATGGTACGGTGTTCCAGGAAACGGTGCCGGTAAATTAGAAGAGGCTATGAGAAAGCATTTACCTGATCTCTTCGACGAACAACCCGATTTGCTTCATAAATTGGCAAGTTTCTTCGCTAACTTAAAGTGGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGCGCATACCATTCGGGATTCAACAGTGGTTTCAATTGTGCCGAGGCAGTTAATGTCGCTCCGGTTGACTGGTTGCCCCACGGTCAAATTGCCGTAGAATTATATCGTGAGCAGGGACGAAGAACTACTATTTCTCACGATAAACTACTGCTCGGTGCAGCGAGGGAAGCTGTGAGAGCACACTGGGAACTTAATTTACAGAAAAGGAACACTTTGGATAACTTAAGATGGAATAATGTTTGTGGAAAAGATGGAGTCCTAGCAAGAGCATTCAAGACACGTGTTGAGCTGGAGTGTGCACGGAGGAACATTCCGTGCGGTTCTTCTCGGGCAATGAAGATGGAAAGCAACTTTGATGCCTCTAATGAGAGGGAATGCAGTTCATGCCTCTTTGACTTGCATTTGTCTGCAGTTGGGTGCCGTTGTTCACCAGATAAGTATGTGTGCTTGAATCATGCAAACCAGTTGTGTTCTTGTGCATGGGAAGAGAAATTTTTTCTCTTTCGTTATGATATCAGTGAATTGAACATACTTCTTGAAGCATTGGAAGGAAAGTTAAGTGCAATATACAGGTGGGCTAGGCAGGATCTCGGTCTGGCGCTTAGTTCATCGAGGGAGTTGAATTCTCAATCATCAACCAACTCGTTCGTGAATTCTCGGTTGGAAGATTTCTTGATTCGATCTTCATTATTGCCAACTCTAACTGCTATTGACAGCCCGTCTCACCGTGCCGAAAAGGTATCAGAAGTTACTGCTTCACATCTAGAAGATAAGAAGGTAATTTCTACACTTAATGGATCTGGGACGGAAGTCGAGCAGAAAAACCGTAAATCTGAGGTGAAAAGCGAAAACCATGAACTCGTGTCGACCAATACAAATGCTCTAAATTTGGTAGAAGCGAAAAATCGAGTGCATAAAACGTGTCCTGAAAATGTCATTCTACTAAGTGATGATGAAGGCGATGAGTATAAGAAGACGATTTCAAATGGTTTAGCTGAAAGTTCAGATCGGTTCGCTGAGGTTGATTCTAAGGCTAGCCTGTGCAACTACAATGAAAATGCAATCTTGCGTACCCCGGTGACCGATGCAACAACCATGGTCGAAAAGGAAGACAGGACATCGAATAGTTGTCAATCGAGCGTTGAACCTTTAAATCATAAACAGTCTTCAAACGTGAACTTATCGGTTAGAAATGCAGCTAATGCCGTTCAGAACAATAGTTTTTCAGAAGTCGGATTAGGTCATAGTAATATATTATTTCGAGCTTCAACGGACACTGATTCTCAAAAACCACAATTGTGTGGCTCTGGAAAACCGATCGAGGCTAAGCCGGGAAACGTCGGAACAAGCGCTACTTCTTGTGCTAATGTGGACAGATTCTTGAGGCAAAAGGGTCCTCGAATGGCGAAGGTCGTTCGGAGGATTAACTGCAATGTCGAGCCTTTAGAATATGGAAACGTGATCTCGGGAAAGTCTTGGTCGAACAGTCGGGCCATTTTTCCAAAAGGATTTAAGAGCCGGGTCAAGTATATAAGCGTTTTAGATCCGTCAACTGTATGTTACTACGTTTCTGAAATTCTCGATGTTGGACGGGATGGACCTCTTTTCATGGTTGTTTTGGAGCATTGTCCAAGTGAGGTATTCGTTCATGTCTCTGCTTGCAGATGTTGGGAGTTGGTTAGAAACCGAGTCAATCACGAAATCGCGAAGCAACATAAGTTGGGTCGAACAAATCTCCCTCCTCTACAGCCTCCCGGGAGCTTAGATGGGTTAGAAATGTTCGGGTTTACCTCACCGGCAATTGTTCAGGCCATTGAGGCGATCGATCAAAATCGAGTATGTTGTGAGTATTGGGACTCTCGGCCCTATTCTCGGCCTCATGTACACAATCCACAACTATCTCAATCGACGCAAATTAGTCAAAACTTGCAAACAATCGAAAGGAATCACGAGGCCAATCCTAGGCCTGGTAGAGTCGATATAGTACTTAGGGGATTGTTGAAGAAGGCAAACCCGGAGGAACTAAACTCACTCTATACTCTTTTAAATGATAATAGGTCAACAGTTGATCGAGACGTGCTGACTCTTCTTAACGAAGAGATTCAAAGTCATCGCAGATGA 3483 43.78 MGTELIRVSVEEDSDDFPSVPPGFESYISFPLGKAHNHEKAHVPVSLPTTISESQPVKVETEVEIADVPKVTRALRRKPCINYRQFEYCSDDKLDTKRVDQVVARWRPEESCRPDLEAAPVFYPNEEEFEDTLTYIASIRTEAEPYGICRIVPPSSWKPPCPLKQKHIWENSKFATRVQRIDKLQNRDSIRKNFRVCNQMRRKRRRVNRKGVDVTTLNGKNEDAGSRSTERFGFDPGTDFTLESFKKYADDFKSQYFSKPLHDTAKGCNPSMLQENEHWKPSVENIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFPKSCCQEGYTSDDDKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGNGAGKLEEAMRKHLPDLFDEQPDLLHKLASFFANLKWCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNLQKRNTLDNLRWNNVCGKDGVLARAFKTRVELECARRNIPCGSSRAMKMESNFDASNERECSSCLFDLHLSAVGCRCSPDKYVCLNHANQLCSCAWEEKFFLFRYDISELNILLEALEGKLSAIYRWARQDLGLALSSSRELNSQSSTNSFVNSRLEDFLIRSSLLPTLTAIDSPSHRAEKVSEVTASHLEDKKVISTLNGSGTEVEQKNRKSEVKSENHELVSTNTNALNLVEAKNRVHKTCPENVILLSDDEGDEYKKTISNGLAESSDRFAEVDSKASLCNYNENAILRTPVTDATTMVEKEDRTSNSCQSSVEPLNHKQSSNVNLSVRNAANAVQNNSFSEVGLGHSNILFRASTDTDSQKPQLCGSGKPIEAKPGNVGTSATSCANVDRFLRQKGPRMAKVVRRINCNVEPLEYGNVISGKSWSNSRAIFPKGFKSRVKYISVLDPSTVCYYVSEILDVGRDGPLFMVVLEHCPSEVFVHVSACRCWELVRNRVNHEIAKQHKLGRTNLPPLQPPGSLDGLEMFGFTSPAIVQAIEAIDQNRVCCEYWDSRPYSRPHVHNPQLSQSTQISQNLQTIERNHEANPRPGRVDIVLRGLLKKANPEELNSLYTLLNDNRSTVDRDVLTLLNEEIQSHRR 1160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8969479 8980810 - CmoCh12G009620.1 Cmo12g00962 393650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00962 1160 SUPERFAMILY Clavaminate synthase-like 334 517 - -
Cmo12g00962 1160 ProSiteProfiles JmjC domain profile. 333 490 IPR003347 -
Cmo12g00962 1160 Pfam C5HC2 zinc finger 580 630 IPR004198 -
Cmo12g00962 1160 SMART fyrn_3 939 983 IPR003888 GO:0005634
Cmo12g00962 1160 PANTHER JUMONJI 14-RELATED 732 1157 - -
Cmo12g00962 1160 PANTHER JUMONJI 14-RELATED 98 713 - -
Cmo12g00962 1160 ProSiteProfiles FYR domain FYRN motif profile. 925 983 IPR003888 GO:0005634
Cmo12g00962 1160 PANTHER LYSINE-SPECIFIC DEMETHYLASE 732 1157 - -
Cmo12g00962 1160 PANTHER LYSINE-SPECIFIC DEMETHYLASE 98 713 - -
Cmo12g00962 1160 Pfam jmjN domain 120 153 IPR003349 -
Cmo12g00962 1160 SMART cupin_9 333 490 IPR003347 -
Cmo12g00962 1160 MobiDBLite consensus disorder prediction 720 741 - -
Cmo12g00962 1160 Pfam JmjC domain, hydroxylase 366 473 IPR003347 -
Cmo12g00962 1160 Pfam F/Y rich C-terminus 987 1071 IPR003889 GO:0005634
Cmo12g00962 1160 SMART JmjN_1 118 159 IPR003349 -
Cmo12g00962 1160 Pfam F/Y-rich N-terminus 939 980 IPR003888 GO:0005634
Cmo12g00962 1160 ProSiteProfiles JmjN domain profile. 119 160 IPR003349 -
Cmo12g00962 1160 ProSiteProfiles FYR domain FYRC motif profile. 985 1075 IPR003889 GO:0005634
Cmo12g00962 1160 MobiDBLite consensus disorder prediction 883 902 - -
Cmo12g00962 1160 SMART fyrc_3 989 1083 IPR003889 GO:0005634
Cmo12g00962 1160 Gene3D - 932 1069 - -
Cmo12g00962 1160 Gene3D Cupin 104 474 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00802 Cmo12g00962 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00962 Cmo-Chr12:8969479 Cmo13g00490 Cmo-Chr13:5874937 0 dispersed
Cmo08g00271 Cmo-Chr8:1696344 Cmo12g00962 Cmo-Chr12:8969479 0 transposed
Cmo12g00962 Cmo-Chr12:8969479 Cmo05g00802 Cmo-Chr5:4687565 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10761 PF02373 JmjC 2.70E-33 CL0029 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00962 - - csv:101208186 1883.61