Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00962 ATGGGGACAGAGCTTATACGAGTTTCTGTGGAAGAAGATAGTGATGACTTTCCATCAGTTCCACCAGGTTTCGAGTCATATATATCCTTTCCTCTAGGGAAAGCGCACAATCATGAAAAAGCTCACGTCCCTGTTAGTTTGCCGACGACCATCTCCGAGTCACAACCAGTTAAAGTGGAAACTGAGGTAGAAATTGCCGATGTTCCAAAAGTAACAAGGGCCCTCCGACGTAAACCATGTATAAACTATAGACAATTTGAGTACTGTTCCGACGACAAGCTTGATACTAAGCGCGTTGATCAGGTTGTTGCGAGATGGCGTCCAGAAGAATCCTGCCGACCGGACCTTGAGGCCGCTCCTGTGTTTTACCCAAATGAAGAGGAATTTGAAGATACTTTGACATATATAGCAAGCATACGAACAGAAGCAGAACCATATGGGATTTGTCGTATTGTCCCGCCATCTTCTTGGAAACCTCCATGTCCGCTGAAGCAGAAACATATTTGGGAGAATTCTAAATTTGCAACTCGTGTCCAAAGGATCGATAAGCTTCAGAATCGGGATTCAATAAGAAAGAACTTTAGAGTTTGCAATCAAATGAGACGGAAAAGGAGGAGGGTTAATCGAAAGGGGGTTGATGTTACCACCTTAAATGGAAAAAATGAAGATGCGGGGTCTCGTTCGACAGAAAGATTTGGATTTGATCCTGGTACAGATTTTACTTTAGAATCGTTTAAAAAATATGCCGATGACTTTAAGTCTCAGTATTTTAGTAAACCACTCCATGATACCGCTAAGGGATGTAATCCCTCCATGCTGCAAGAGAACGAGCATTGGAAACCGTCTGTGGAAAATATTGAGGGCGAATATTGGCGGATGGTAGAGAAGCCAACGGAAGAGATCGAGGTGCTCTATGGGGCTGATTTAGAAACTGGAGAGTTTGGCAGCGGTTTTCCGAAAAGTTGCTGTCAAGAGGGCTATACATCAGATGACGATAAGTATGTAAAATCTGGCTGGAACCTGAATAACTTTCCGAAGCTTCCCGGTTCGGTCCTTAGCTATGAGAGCAGTAATATATCTGGAGTCTTGGTACCATGGCTGTATATTGGGATGTGCTTTTCGTCCTTTTGCTGGCACGTTGAAGATCACCACCTCTACTCTCTGAATTACTTGCACTGGGGAGATCCGAAAGTATGGTACGGTGTTCCAGGAAACGGTGCCGGTAAATTAGAAGAGGCTATGAGAAAGCATTTACCTGATCTCTTCGACGAACAACCCGATTTGCTTCATAAATTGGCAAGTTTCTTCGCTAACTTAAAGTGGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGCGCATACCATTCGGGATTCAACAGTGGTTTCAATTGTGCCGAGGCAGTTAATGTCGCTCCGGTTGACTGGTTGCCCCACGGTCAAATTGCCGTAGAATTATATCGTGAGCAGGGACGAAGAACTACTATTTCTCACGATAAACTACTGCTCGGTGCAGCGAGGGAAGCTGTGAGAGCACACTGGGAACTTAATTTACAGAAAAGGAACACTTTGGATAACTTAAGATGGAATAATGTTTGTGGAAAAGATGGAGTCCTAGCAAGAGCATTCAAGACACGTGTTGAGCTGGAGTGTGCACGGAGGAACATTCCGTGCGGTTCTTCTCGGGCAATGAAGATGGAAAGCAACTTTGATGCCTCTAATGAGAGGGAATGCAGTTCATGCCTCTTTGACTTGCATTTGTCTGCAGTTGGGTGCCGTTGTTCACCAGATAAGTATGTGTGCTTGAATCATGCAAACCAGTTGTGTTCTTGTGCATGGGAAGAGAAATTTTTTCTCTTTCGTTATGATATCAGTGAATTGAACATACTTCTTGAAGCATTGGAAGGAAAGTTAAGTGCAATATACAGGTGGGCTAGGCAGGATCTCGGTCTGGCGCTTAGTTCATCGAGGGAGTTGAATTCTCAATCATCAACCAACTCGTTCGTGAATTCTCGGTTGGAAGATTTCTTGATTCGATCTTCATTATTGCCAACTCTAACTGCTATTGACAGCCCGTCTCACCGTGCCGAAAAGGTATCAGAAGTTACTGCTTCACATCTAGAAGATAAGAAGGTAATTTCTACACTTAATGGATCTGGGACGGAAGTCGAGCAGAAAAACCGTAAATCTGAGGTGAAAAGCGAAAACCATGAACTCGTGTCGACCAATACAAATGCTCTAAATTTGGTAGAAGCGAAAAATCGAGTGCATAAAACGTGTCCTGAAAATGTCATTCTACTAAGTGATGATGAAGGCGATGAGTATAAGAAGACGATTTCAAATGGTTTAGCTGAAAGTTCAGATCGGTTCGCTGAGGTTGATTCTAAGGCTAGCCTGTGCAACTACAATGAAAATGCAATCTTGCGTACCCCGGTGACCGATGCAACAACCATGGTCGAAAAGGAAGACAGGACATCGAATAGTTGTCAATCGAGCGTTGAACCTTTAAATCATAAACAGTCTTCAAACGTGAACTTATCGGTTAGAAATGCAGCTAATGCCGTTCAGAACAATAGTTTTTCAGAAGTCGGATTAGGTCATAGTAATATATTATTTCGAGCTTCAACGGACACTGATTCTCAAAAACCACAATTGTGTGGCTCTGGAAAACCGATCGAGGCTAAGCCGGGAAACGTCGGAACAAGCGCTACTTCTTGTGCTAATGTGGACAGATTCTTGAGGCAAAAGGGTCCTCGAATGGCGAAGGTCGTTCGGAGGATTAACTGCAATGTCGAGCCTTTAGAATATGGAAACGTGATCTCGGGAAAGTCTTGGTCGAACAGTCGGGCCATTTTTCCAAAAGGATTTAAGAGCCGGGTCAAGTATATAAGCGTTTTAGATCCGTCAACTGTATGTTACTACGTTTCTGAAATTCTCGATGTTGGACGGGATGGACCTCTTTTCATGGTTGTTTTGGAGCATTGTCCAAGTGAGGTATTCGTTCATGTCTCTGCTTGCAGATGTTGGGAGTTGGTTAGAAACCGAGTCAATCACGAAATCGCGAAGCAACATAAGTTGGGTCGAACAAATCTCCCTCCTCTACAGCCTCCCGGGAGCTTAGATGGGTTAGAAATGTTCGGGTTTACCTCACCGGCAATTGTTCAGGCCATTGAGGCGATCGATCAAAATCGAGTATGTTGTGAGTATTGGGACTCTCGGCCCTATTCTCGGCCTCATGTACACAATCCACAACTATCTCAATCGACGCAAATTAGTCAAAACTTGCAAACAATCGAAAGGAATCACGAGGCCAATCCTAGGCCTGGTAGAGTCGATATAGTACTTAGGGGATTGTTGAAGAAGGCAAACCCGGAGGAACTAAACTCACTCTATACTCTTTTAAATGATAATAGGTCAACAGTTGATCGAGACGTGCTGACTCTTCTTAACGAAGAGATTCAAAGTCATCGCAGATGA 3483 43.78 MGTELIRVSVEEDSDDFPSVPPGFESYISFPLGKAHNHEKAHVPVSLPTTISESQPVKVETEVEIADVPKVTRALRRKPCINYRQFEYCSDDKLDTKRVDQVVARWRPEESCRPDLEAAPVFYPNEEEFEDTLTYIASIRTEAEPYGICRIVPPSSWKPPCPLKQKHIWENSKFATRVQRIDKLQNRDSIRKNFRVCNQMRRKRRRVNRKGVDVTTLNGKNEDAGSRSTERFGFDPGTDFTLESFKKYADDFKSQYFSKPLHDTAKGCNPSMLQENEHWKPSVENIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFPKSCCQEGYTSDDDKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGNGAGKLEEAMRKHLPDLFDEQPDLLHKLASFFANLKWCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNLQKRNTLDNLRWNNVCGKDGVLARAFKTRVELECARRNIPCGSSRAMKMESNFDASNERECSSCLFDLHLSAVGCRCSPDKYVCLNHANQLCSCAWEEKFFLFRYDISELNILLEALEGKLSAIYRWARQDLGLALSSSRELNSQSSTNSFVNSRLEDFLIRSSLLPTLTAIDSPSHRAEKVSEVTASHLEDKKVISTLNGSGTEVEQKNRKSEVKSENHELVSTNTNALNLVEAKNRVHKTCPENVILLSDDEGDEYKKTISNGLAESSDRFAEVDSKASLCNYNENAILRTPVTDATTMVEKEDRTSNSCQSSVEPLNHKQSSNVNLSVRNAANAVQNNSFSEVGLGHSNILFRASTDTDSQKPQLCGSGKPIEAKPGNVGTSATSCANVDRFLRQKGPRMAKVVRRINCNVEPLEYGNVISGKSWSNSRAIFPKGFKSRVKYISVLDPSTVCYYVSEILDVGRDGPLFMVVLEHCPSEVFVHVSACRCWELVRNRVNHEIAKQHKLGRTNLPPLQPPGSLDGLEMFGFTSPAIVQAIEAIDQNRVCCEYWDSRPYSRPHVHNPQLSQSTQISQNLQTIERNHEANPRPGRVDIVLRGLLKKANPEELNSLYTLLNDNRSTVDRDVLTLLNEEIQSHRR 1160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8969479 8980810 - CmoCh12G009620.1 Cmo12g00962 393650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00962 1160 SUPERFAMILY Clavaminate synthase-like 334 517 - -
Cmo12g00962 1160 ProSiteProfiles JmjC domain profile. 333 490 IPR003347 -
Cmo12g00962 1160 Pfam C5HC2 zinc finger 580 630 IPR004198 -
Cmo12g00962 1160 SMART fyrn_3 939 983 IPR003888 GO:0005634
Cmo12g00962 1160 PANTHER JUMONJI 14-RELATED 732 1157 - -
Cmo12g00962 1160 PANTHER JUMONJI 14-RELATED 98 713 - -
Cmo12g00962 1160 ProSiteProfiles FYR domain FYRN motif profile. 925 983 IPR003888 GO:0005634
Cmo12g00962 1160 PANTHER LYSINE-SPECIFIC DEMETHYLASE 732 1157 - -
Cmo12g00962 1160 PANTHER LYSINE-SPECIFIC DEMETHYLASE 98 713 - -
Cmo12g00962 1160 Pfam jmjN domain 120 153 IPR003349 -
Cmo12g00962 1160 SMART cupin_9 333 490 IPR003347 -
Cmo12g00962 1160 MobiDBLite consensus disorder prediction 720 741 - -
Cmo12g00962 1160 Pfam JmjC domain, hydroxylase 366 473 IPR003347 -
Cmo12g00962 1160 Pfam F/Y rich C-terminus 987 1071 IPR003889 GO:0005634
Cmo12g00962 1160 SMART JmjN_1 118 159 IPR003349 -
Cmo12g00962 1160 Pfam F/Y-rich N-terminus 939 980 IPR003888 GO:0005634
Cmo12g00962 1160 ProSiteProfiles JmjN domain profile. 119 160 IPR003349 -
Cmo12g00962 1160 ProSiteProfiles FYR domain FYRC motif profile. 985 1075 IPR003889 GO:0005634
Cmo12g00962 1160 MobiDBLite consensus disorder prediction 883 902 - -
Cmo12g00962 1160 SMART fyrc_3 989 1083 IPR003889 GO:0005634
Cmo12g00962 1160 Gene3D - 932 1069 - -
Cmo12g00962 1160 Gene3D Cupin 104 474 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00962 - - - csv:101208186 1883.61
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00802 Cmo12g00962 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00962 Cmo-Chr12:8969479 Cmo13g00490 Cmo-Chr13:5874937 0 dispersed
Cmo08g00271 Cmo-Chr8:1696344 Cmo12g00962 Cmo-Chr12:8969479 0 transposed
Cmo12g00962 Cmo-Chr12:8969479 Cmo05g00802 Cmo-Chr5:4687565 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g610 Blo10g00272 Blo11g00440 . . . Bpe09g00662 Bma13g00412 . . . . Cma12g00959 . Car12g00919 . Cpe07g00798 . . . . . . . . . . . . . . . Cone10ag0643 Cone3ag0673 . . . Csa02g00757 . Cme05g01133 . . . . . . . . . Cmo05g00802 Cmo12g00962 . . . . . . Bhi06g01091 . . . . . . Cla11g01036 Cam11g1090 . Cco11g1094 Clacu11g1252 Cmu11g1088 Cre11g1512 . . Chy05g00772 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo12g00962 CST 1 1159 JUMONJI Transcription Factor Family AT1G08620 51.1 0.0e+00 1137.5
Cmo18g00512 . 34 583 JUMONJI Transcription Factor Family AT1G08620 59.2 1.6e-187 654.4
Cmo18g00512 . 23 706 JUMONJI Transcription Factor Family AT1G30810 55.3 7.8e-215 744.6
Cmo18g00512 . 29 670 JUMONJI Transcription Factor Family AT2G34880 51.4 2.5e-189 659.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004424 1 5 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10761 PF02373 JmjC 2.70E-33 CL0029 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00962 Cmo_Chr12 FPKM 28.832811 30.942434 25.137074 25.64963 26.852503 22.81374 29.286926 22.084579 21.213701 24.412172