Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00985 ATGGCCACTCTTTCCTGCCAACCCTCCGACTTGGCCACCCTCCTCGGCTCGACCGCCACCGCCAACTCCTCCGCCGTGGCCGACTACCTCTGCTCGAGGTTCAACACAGTCGCCGCTACTCTCACGTCCACCTCCTACGCCCTCGACAACACCTACCTTCTCTTCTCAGCCTACCTCGTCTTCGCCATGCAACTCGGCTTCGCCATGCTATGCGCTGGCTCGGTCCGGGCCAAGAACACCATGAACATCATGCTCACCAACGTCCTCGACGCAGCCGCCGGTGGCCTCTCGTACTACCTCTTCGGCTTCGCCTTCGCCTTCGGTGCCCCTTCTAACTCCTTCATCGGGCGCCACTTTTTTGGCCTCTCCCATTTCCCTAACCCCTCCACTGATTATAGCTTCTTTCTTTACCAATGGGCCTTTGCTATTGCTGCCGCAGGCATCACAAGCGGTTCAATAGCCGAGCGAACCCAATTCGTAGCCTACCTCATTTACTCGACCGTCCTAACCGGTTTTGTCTACCCCATAGTCTCCCACTGGTTCTGGTCGGCCGATGGCTGGGCTAGCGCAGCTCGACCCAGTAACCTCCTATTCAACTCGGGCGCAATCGACTTCGCTGGGTCAGGCGTGGTCCACATGGTCGGCGGCATAGCCGGCTTGTGGGGAGCCTTAATCGAAGGCCCACGAATCGGCCGATTCGACCGTTCAGGCCGGTCCGTAGCTCTACGTGGCCATAGCGCTTCCTTAGTAGTCCTCGGTTCATTCCTCCTCTGGTTCGGCTGGTACGGGTTCAACCCCGGTTCGTTTCTAACTATTTCCAAATCCTACAATGACGGCCGCCCTTATTACGGCCAATGGAGCGCCATAGGCCGAACCGGAGTCACCACAACATTAGCCGGATGTACAGCCGCGCTAACAACGCTCTTCTCAAAACGGCTGTTAGTTGGACATTGGAACGTAATCGACGTGTGCAACGGCTTATTAGGTGGCTTCGCAGCCATCACAGCCGGCTGCGCCGTAGTGGACCCATGGGCGGCTGTGATATGTGGATTCATAGCGGCTTGGATTCTAATTGGCTTCAACAAGCTAGCCGAGAAGTGCAGCTACGATGACCCATTAGAGGCAGCGCAACTCCACGGCGGATGTGGCGCGTGGGGGTTGATATTCACGGGATTATTCGCGAGAAAGGAGTACGTGGCGGAGGTTTATAAGGCAGGGCGGCCGTTTGGGTTGTTTATGGGCGGCGGAGGGAGGCTACTGGCGGCGCAATTGGTGGAGATAGCGGCGATTGTGGGGTGGGTGTCGGTGACGATGGGGGGATTGTTTTATGGGCTGAAGAAGGCGAAATTGCTGAGGATATCGAGGGAGGATGAGATGGCAGGGATGGATATGACGAGGCATGGGGGGTTTGCTTACGTGTACAATGACGAGGATGATCCGTCTGGGAAGCCGGCTGGGTTTATGCTGAGGAGGATTGAGCCAGCCGATGGGAGTCCTAGTCCTGTTGACGACCGTTATCCTTCTGGGATGGCTGCCGTTTGA 1542 57.2 MATLSCQPSDLATLLGSTATANSSAVADYLCSRFNTVAATLTSTSYALDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNSFIGRHFFGLSHFPNPSTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSTVLTGFVYPIVSHWFWSADGWASAARPSNLLFNSGAIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFLTISKSYNDGRPYYGQWSAIGRTGVTTTLAGCTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITAGCAVVDPWAAVICGFIAAWILIGFNKLAEKCSYDDPLEAAQLHGGCGAWGLIFTGLFARKEYVAEVYKAGRPFGLFMGGGGRLLAAQLVEIAAIVGWVSVTMGGLFYGLKKAKLLRISREDEMAGMDMTRHGGFAYVYNDEDDPSGKPAGFMLRRIEPADGSPSPVDDRYPSGMAAV 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9210128 9212674 - CmoCh12G009850.1 Cmo12g00985 393673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00985 513 PANTHER AMMONIUM TRANSPORTER 5 505 - -
Cmo12g00985 513 TIGRFAM amt: ammonium transporter 49 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cmo12g00985 513 MobiDBLite consensus disorder prediction 492 513 - -
Cmo12g00985 513 SUPERFAMILY Ammonium transporter 47 453 - -
Cmo12g00985 513 ProSitePatterns Ammonium transporters signature. 204 229 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cmo12g00985 513 Pfam Ammonium Transporter Family 52 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cmo12g00985 513 PANTHER AMMONIUM TRANSPORTER 5 505 - -
Cmo12g00985 513 Gene3D Ammonium transporter AmtB like domains 28 484 IPR029020 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01754 Cmo-Chr2:10037187 Cmo12g00985 Cmo-Chr12:9210128 0 dispersed
Cmo06g00209 Cmo-Chr6:1128381 Cmo12g00985 Cmo-Chr12:9210128 1.21E-19 dispersed
Cmo12g00985 Cmo-Chr12:9210128 Cmo14g01901 Cmo-Chr14:14177695 0 dispersed
Cmo12g00985 Cmo-Chr12:9210128 Cmo08g01012 Cmo-Chr8:6583834 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00985 K03320 K07573 csv:101222356 891.338