Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01003 ATGGAATCGGAGGACGAGCTGGACATGCACGATGCCCACGACGACGACGACGACTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGCGAAGATGATGCTGCCGCCATCGACAGCGACGATGCTGATGTCGGCGATTATGAGTTCGTCGATAATGATTCCGACGATTCCGATGATATGGTCTCCTACAGACACCAGCAAAACTATATAATCTTGGCTGAGGCGGACATACGACAACGACAGGAGGAAGACATTATGAGAGTATCTACTGTTCTTTCTATTTCAAAAGTAGCAGCTAGCATCCTGCTCCGACATTACAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAAAAGGTCCGTAGAGCTGTTGGCATATTAGAAAAACCAGTTTTGCCGCCTTCAAATGCACTAGAACTACCTTGTGGTATATGTTTTGAAATCTATTCACGTGATAACATTCAGTCTGCTGCTTGTGGCCATCCATTTTGCAACACGTGTTGGACAGGTTATATTAGGACATCTATCAATGATGGTCCAGGATGTCTTATGTTGCGGTGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTGGCTTCTGATGATGACAAAAAGAAGTACTCCCGTTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGTCCCGCTCCAGGATGCGACTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTTACATGCAGATGCTCCTATAGCTTTTGCTGGAATTGTACCGAGGAAGCTCATCGTCCTGTTGATTGTGGCACTGTAGCTAAATGGATCTTGAAGAATAGTGCTGAGTCAGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGTCCCAAATGCAAACGACCGATCGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCCTGTAAATTTGAGTTCTGCTGGCTTTGTCTTGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGCAGAGAGATGGCCAAGAATTCGCTGGAGAGGTACACTCATTATTATGAAAGATGGGCCACGAACCAATCGTCTAGGCAAAAGGCGCTTGCAGATCTCCATCAAATGCAAACCGTGCATCTGGAAAAGTTAAGTGACACTCAGTGCCAGCCTGAATCACAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTCGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCCGAGCGTGAACACGCCAAGAGACTGTTTTTTGAGTACTTGCAAGGTGAGGCTGAGTCCGGGTTGGAACGACTCCACCAATGTGCTGAAAAGGAGTTGCAAGCTTACATAACTGCTGATGGTCCTTCAAGAGAATTTAACGAGTTCCGAACCAAACTTGCTGGACTAACCAGTGTAACTAGGAATTACTTCGAGAATTTAGTACGTGCTCTTGAGAATGGTCTATCAGATGTGGACTCCCAGGGTACCTGCAGCAGAACAGCAAGCTCGAAGAGCATCGGTGGCAGTAGGAGCAAAGGTGGGAAGGGCAAGATGAGTGCATTCCGAGCTAGCGGTTCGAGTCGAACCATTGATGATACTGACCATTGCAACGGCGATAACCGTATTCACGCATTGGAAAACCAATGTAGACGATGCCTTTCGTTCCGTTCGTCGTCTGTTCTTGCTGGTCGGAATGTTCACACGCATAATTTATGTTTCAGAAGGAAATGA 1842 45.17 MESEDELDMHDAHDDDDDSVDNEEDFYSGGEDDAAAIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIRQRQEEDIMRVSTVLSISKVAASILLRHYNWSVSKVHDEWFADEEKVRRAVGILEKPVLPPSNALELPCGICFEIYSRDNIQSAACGHPFCNTCWTGYIRTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYSRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDTQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRLFFEYLQGEAESGLERLHQCAEKELQAYITADGPSREFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSQGTCSRTASSKSIGGSRSKGGKGKMSAFRASGSSRTIDDTDHCNGDNRIHALENQCRRCLSFRSSSVLAGRNVHTHNLCFRRK 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9353963 9372194 - CmoCh12G010030.1 Cmo12g01003 393691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01003 613 Pfam IBR domain, a half RING-finger domain 294 342 IPR002867 -
Cmo12g01003 613 Pfam IBR domain, a half RING-finger domain 215 277 IPR002867 -
Cmo12g01003 613 MobiDBLite consensus disorder prediction 536 563 - -
Cmo12g01003 613 SMART ibrneu5 215 277 IPR002867 -
Cmo12g01003 613 SMART ibrneu5 281 351 IPR002867 -
Cmo12g01003 613 ProSiteProfiles TRIAD supradomain profile. 142 355 IPR044066 -
Cmo12g01003 613 SUPERFAMILY RING/U-box 296 344 - -
Cmo12g01003 613 CDD RING-HC_RBR_TRIAD1_like 146 196 - -
Cmo12g01003 613 Gene3D - 273 528 - -
Cmo12g01003 613 MobiDBLite consensus disorder prediction 1 56 - -
Cmo12g01003 613 SUPERFAMILY RING/U-box 144 224 - -
Cmo12g01003 613 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 229 IPR013083 -
Cmo12g01003 613 MobiDBLite consensus disorder prediction 1 58 - -
Cmo12g01003 613 SUPERFAMILY RING/U-box 216 284 - -
Cmo12g01003 613 Pfam Ariadne domain 364 567 IPR045840 -
Cmo12g01003 613 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 31 545 IPR031127 GO:0004842|GO:0016567
Cmo12g01003 613 ProSiteProfiles Zinc finger RING-type profile. 146 190 IPR001841 -
Cmo12g01003 613 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 31 545 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00422 Cmo-Chr2:2204409 Cmo12g01003 Cmo-Chr12:9353963 1.15E-57 dispersed
Cmo12g01003 Cmo-Chr12:9353963 Cmo17g00577 Cmo-Chr17:5927996 3.59E-132 dispersed
Cmo12g01003 Cmo-Chr12:9353963 Cmo08g00213 Cmo-Chr8:1264553 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01003 K11968 - csv:101218052 1056.59