Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01003 ATGGAATCGGAGGACGAGCTGGACATGCACGATGCCCACGACGACGACGACGACTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGCGAAGATGATGCTGCCGCCATCGACAGCGACGATGCTGATGTCGGCGATTATGAGTTCGTCGATAATGATTCCGACGATTCCGATGATATGGTCTCCTACAGACACCAGCAAAACTATATAATCTTGGCTGAGGCGGACATACGACAACGACAGGAGGAAGACATTATGAGAGTATCTACTGTTCTTTCTATTTCAAAAGTAGCAGCTAGCATCCTGCTCCGACATTACAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAAAAGGTCCGTAGAGCTGTTGGCATATTAGAAAAACCAGTTTTGCCGCCTTCAAATGCACTAGAACTACCTTGTGGTATATGTTTTGAAATCTATTCACGTGATAACATTCAGTCTGCTGCTTGTGGCCATCCATTTTGCAACACGTGTTGGACAGGTTATATTAGGACATCTATCAATGATGGTCCAGGATGTCTTATGTTGCGGTGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTGGCTTCTGATGATGACAAAAAGAAGTACTCCCGTTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGTCCCGCTCCAGGATGCGACTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTTACATGCAGATGCTCCTATAGCTTTTGCTGGAATTGTACCGAGGAAGCTCATCGTCCTGTTGATTGTGGCACTGTAGCTAAATGGATCTTGAAGAATAGTGCTGAGTCAGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGTCCCAAATGCAAACGACCGATCGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCCTGTAAATTTGAGTTCTGCTGGCTTTGTCTTGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGCAGAGAGATGGCCAAGAATTCGCTGGAGAGGTACACTCATTATTATGAAAGATGGGCCACGAACCAATCGTCTAGGCAAAAGGCGCTTGCAGATCTCCATCAAATGCAAACCGTGCATCTGGAAAAGTTAAGTGACACTCAGTGCCAGCCTGAATCACAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTCGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCCGAGCGTGAACACGCCAAGAGACTGTTTTTTGAGTACTTGCAAGGTGAGGCTGAGTCCGGGTTGGAACGACTCCACCAATGTGCTGAAAAGGAGTTGCAAGCTTACATAACTGCTGATGGTCCTTCAAGAGAATTTAACGAGTTCCGAACCAAACTTGCTGGACTAACCAGTGTAACTAGGAATTACTTCGAGAATTTAGTACGTGCTCTTGAGAATGGTCTATCAGATGTGGACTCCCAGGGTACCTGCAGCAGAACAGCAAGCTCGAAGAGCATCGGTGGCAGTAGGAGCAAAGGTGGGAAGGGCAAGATGAGTGCATTCCGAGCTAGCGGTTCGAGTCGAACCATTGATGATACTGACCATTGCAACGGCGATAACCGTATTCACGCATTGGAAAACCAATGTAGACGATGCCTTTCGTTCCGTTCGTCGTCTGTTCTTGCTGGTCGGAATGTTCACACGCATAATTTATGTTTCAGAAGGAAATGA 1842 45.17 MESEDELDMHDAHDDDDDSVDNEEDFYSGGEDDAAAIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIRQRQEEDIMRVSTVLSISKVAASILLRHYNWSVSKVHDEWFADEEKVRRAVGILEKPVLPPSNALELPCGICFEIYSRDNIQSAACGHPFCNTCWTGYIRTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYSRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDTQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRLFFEYLQGEAESGLERLHQCAEKELQAYITADGPSREFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSQGTCSRTASSKSIGGSRSKGGKGKMSAFRASGSSRTIDDTDHCNGDNRIHALENQCRRCLSFRSSSVLAGRNVHTHNLCFRRK 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9353963 9372194 - CmoCh12G010030.1 Cmo12g01003 393691

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01003 613 Pfam IBR domain, a half RING-finger domain 294 342 IPR002867 -
Cmo12g01003 613 Pfam IBR domain, a half RING-finger domain 215 277 IPR002867 -
Cmo12g01003 613 MobiDBLite consensus disorder prediction 536 563 - -
Cmo12g01003 613 SMART ibrneu5 215 277 IPR002867 -
Cmo12g01003 613 SMART ibrneu5 281 351 IPR002867 -
Cmo12g01003 613 ProSiteProfiles TRIAD supradomain profile. 142 355 IPR044066 -
Cmo12g01003 613 SUPERFAMILY RING/U-box 296 344 - -
Cmo12g01003 613 CDD RING-HC_RBR_TRIAD1_like 146 196 - -
Cmo12g01003 613 Gene3D - 273 528 - -
Cmo12g01003 613 MobiDBLite consensus disorder prediction 1 56 - -
Cmo12g01003 613 SUPERFAMILY RING/U-box 144 224 - -
Cmo12g01003 613 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 229 IPR013083 -
Cmo12g01003 613 MobiDBLite consensus disorder prediction 1 58 - -
Cmo12g01003 613 SUPERFAMILY RING/U-box 216 284 - -
Cmo12g01003 613 Pfam Ariadne domain 364 567 IPR045840 -
Cmo12g01003 613 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 31 545 IPR031127 GO:0004842|GO:0016567
Cmo12g01003 613 ProSiteProfiles Zinc finger RING-type profile. 146 190 IPR001841 -
Cmo12g01003 613 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 31 545 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01003 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101218052 1056.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00422 Cmo-Chr2:2204409 Cmo12g01003 Cmo-Chr12:9353963 1.15E-57 dispersed
Cmo12g01003 Cmo-Chr12:9353963 Cmo17g00577 Cmo-Chr17:5927996 3.59E-132 dispersed
Cmo12g01003 Cmo-Chr12:9353963 Cmo08g00213 Cmo-Chr8:1264553 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo02g00422 . 164 590 ARIADNE family AT4G34370 71.3 2.7e-182 635.6
Cmo20g00877 . 164 589 ARIADNE family AT4G34370 71.5 8.6e-181 630.6
Cmo02g00422 . 58 527 ARIADNE family AT2G16090 78.2 7.2e-224 773.9
Cmo20g00877 . 58 542 ARIADNE family AT2G16090 76.8 7.9e-223 770.4
Cmo20g00877 . 33 543 ARIADNE family AT3G27710 61.6 2.7e-184 642.5
Cmo02g00422 . 36 522 ARIADNE family AT3G27710 62.2 2.6e-182 636.0
Cmo02g00422 . 47 522 ARIADNE family AT3G27720 54.2 2.8e-143 506.1
Cmo20g00877 . 44 522 ARIADNE family AT3G27720 53.6 6.9e-142 501.5
Cmo12g01003 . 25 550 ARIADNE family AT1G05890 65.1 2.8e-222 768.8
Cmo17g00577 CST 61 631 ARIADNE family AT1G05890 60.6 3.8e-203 705.3
Cmo08g00213 CST 54 467 ARIADNE family AT1G05890 73.7 3.5e-188 655.6
Cmo12g01003 . 25 545 ARIADNE family AT1G65430 78.6 8.5e-253 870.2
Cmo17g00577 CST 16 685 ARIADNE family AT1G65430 59.3 7.0e-231 797.3
Cmo08g00213 CST 55 527 ARIADNE family AT1G65430 70.4 1.9e-207 719.5
Cmo12g01003 . 23 460 ARIADNE family AT2G31780 55.3 9.0e-149 524.2
Cmo08g00213 CST 58 392 ARIADNE family AT2G31780 56.8 6.9e-117 418.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g01003 Cmo_Chr12 FPKM 3.337255 5.560108 3.802664 4.278471 5.57345 3.659986 5.813209 3.812997 5.441791 4.750668