Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo12g01003 | ATGGAATCGGAGGACGAGCTGGACATGCACGATGCCCACGACGACGACGACGACTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGCGAAGATGATGCTGCCGCCATCGACAGCGACGATGCTGATGTCGGCGATTATGAGTTCGTCGATAATGATTCCGACGATTCCGATGATATGGTCTCCTACAGACACCAGCAAAACTATATAATCTTGGCTGAGGCGGACATACGACAACGACAGGAGGAAGACATTATGAGAGTATCTACTGTTCTTTCTATTTCAAAAGTAGCAGCTAGCATCCTGCTCCGACATTACAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAAAAGGTCCGTAGAGCTGTTGGCATATTAGAAAAACCAGTTTTGCCGCCTTCAAATGCACTAGAACTACCTTGTGGTATATGTTTTGAAATCTATTCACGTGATAACATTCAGTCTGCTGCTTGTGGCCATCCATTTTGCAACACGTGTTGGACAGGTTATATTAGGACATCTATCAATGATGGTCCAGGATGTCTTATGTTGCGGTGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTGGCTTCTGATGATGACAAAAAGAAGTACTCCCGTTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGTCCCGCTCCAGGATGCGACTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTTACATGCAGATGCTCCTATAGCTTTTGCTGGAATTGTACCGAGGAAGCTCATCGTCCTGTTGATTGTGGCACTGTAGCTAAATGGATCTTGAAGAATAGTGCTGAGTCAGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGTCCCAAATGCAAACGACCGATCGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCCTGTAAATTTGAGTTCTGCTGGCTTTGTCTTGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGCAGAGAGATGGCCAAGAATTCGCTGGAGAGGTACACTCATTATTATGAAAGATGGGCCACGAACCAATCGTCTAGGCAAAAGGCGCTTGCAGATCTCCATCAAATGCAAACCGTGCATCTGGAAAAGTTAAGTGACACTCAGTGCCAGCCTGAATCACAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTCGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCCGAGCGTGAACACGCCAAGAGACTGTTTTTTGAGTACTTGCAAGGTGAGGCTGAGTCCGGGTTGGAACGACTCCACCAATGTGCTGAAAAGGAGTTGCAAGCTTACATAACTGCTGATGGTCCTTCAAGAGAATTTAACGAGTTCCGAACCAAACTTGCTGGACTAACCAGTGTAACTAGGAATTACTTCGAGAATTTAGTACGTGCTCTTGAGAATGGTCTATCAGATGTGGACTCCCAGGGTACCTGCAGCAGAACAGCAAGCTCGAAGAGCATCGGTGGCAGTAGGAGCAAAGGTGGGAAGGGCAAGATGAGTGCATTCCGAGCTAGCGGTTCGAGTCGAACCATTGATGATACTGACCATTGCAACGGCGATAACCGTATTCACGCATTGGAAAACCAATGTAGACGATGCCTTTCGTTCCGTTCGTCGTCTGTTCTTGCTGGTCGGAATGTTCACACGCATAATTTATGTTTCAGAAGGAAATGA | 1842 | 45.17 | MESEDELDMHDAHDDDDDSVDNEEDFYSGGEDDAAAIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIRQRQEEDIMRVSTVLSISKVAASILLRHYNWSVSKVHDEWFADEEKVRRAVGILEKPVLPPSNALELPCGICFEIYSRDNIQSAACGHPFCNTCWTGYIRTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYSRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDTQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRLFFEYLQGEAESGLERLHQCAEKELQAYITADGPSREFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSQGTCSRTASSKSIGGSRSKGGKGKMSAFRASGSSRTIDDTDHCNGDNRIHALENQCRRCLSFRSSSVLAGRNVHTHNLCFRRK | 613 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 9353963 | 9372194 | - | CmoCh12G010030.1 | Cmo12g01003 | 393691 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo12g01003 | 613 | Pfam | IBR domain, a half RING-finger domain | 294 | 342 | IPR002867 | - | |
Cmo12g01003 | 613 | Pfam | IBR domain, a half RING-finger domain | 215 | 277 | IPR002867 | - | |
Cmo12g01003 | 613 | MobiDBLite | consensus disorder prediction | 536 | 563 | - | - | |
Cmo12g01003 | 613 | SMART | ibrneu5 | 215 | 277 | IPR002867 | - | |
Cmo12g01003 | 613 | SMART | ibrneu5 | 281 | 351 | IPR002867 | - | |
Cmo12g01003 | 613 | ProSiteProfiles | TRIAD supradomain profile. | 142 | 355 | IPR044066 | - | |
Cmo12g01003 | 613 | SUPERFAMILY | RING/U-box | 296 | 344 | - | - | |
Cmo12g01003 | 613 | CDD | RING-HC_RBR_TRIAD1_like | 146 | 196 | - | - | |
Cmo12g01003 | 613 | Gene3D | - | 273 | 528 | - | - | |
Cmo12g01003 | 613 | MobiDBLite | consensus disorder prediction | 1 | 56 | - | - | |
Cmo12g01003 | 613 | SUPERFAMILY | RING/U-box | 144 | 224 | - | - | |
Cmo12g01003 | 613 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 141 | 229 | IPR013083 | - | |
Cmo12g01003 | 613 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
Cmo12g01003 | 613 | SUPERFAMILY | RING/U-box | 216 | 284 | - | - | |
Cmo12g01003 | 613 | Pfam | Ariadne domain | 364 | 567 | IPR045840 | - | |
Cmo12g01003 | 613 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 31 | 545 | IPR031127 | GO:0004842|GO:0016567 | |
Cmo12g01003 | 613 | ProSiteProfiles | Zinc finger RING-type profile. | 146 | 190 | IPR001841 | - | |
Cmo12g01003 | 613 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 31 | 545 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00422 | Cmo-Chr2:2204409 | Cmo12g01003 | Cmo-Chr12:9353963 | 1.15E-57 | dispersed | |
Cmo12g01003 | Cmo-Chr12:9353963 | Cmo17g00577 | Cmo-Chr17:5927996 | 3.59E-132 | dispersed | |
Cmo12g01003 | Cmo-Chr12:9353963 | Cmo08g00213 | Cmo-Chr8:1264553 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo12g01003 | K11968 | - | csv:101218052 | 1056.59 |