Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01004 ATGGAGCTTCACCAAATCTCTTTAACTTCAAACACTAAAATTTATTTCCTTTCAATCTCTTTCAAAATCCCTTCATCTTTCTTCTCTTCAATGGGTTCAATGAACTGGTTAGGCTTCTCCCTCTCCCCTCAAGAACAACACTCCGACCACCATCACGGCGGCGGCGGCGGTGGCAGCGTTGGCGGTGATGGTCCTTTCACCTCCGACAACATCTCCGGCTCCGCCGTCTGTTTTGACAACCTCCCCTCTTCCTACGGCGTCTATGAACCCTTCCACCGCAATAATCACTCTCAAGATTGGAACAATCTTAAGGGTTTAGGGTCAGCTCAAAGTTCGGATTTTTCTGCGTTAATCGAAACCCAACAGCCACCAAAGCTTGAAAATTTCCTCGGCCACCACTCTTTCACCGACCACGACCACGCCGTCGTCTACACCAATGCTTCCGGCAACTACATGTTCCAAAATTGTTCCTTGGAGCTTCCATCTGATCCGGCAAACTGCGGCGGTGGAAAAGCCAACGATAACGGCAACAATAATGGTAGCTCTATTGGGCTGTCTATGATGAAGACGTGGCTGAGAAATCAACCTGCGCCGCCGCAAGCGGTGGCGAAGTATGGCGGAAATCACGACGGTGCGGTTAGATCAGGTAATATCACAAACGCACATAGTTTATCGCTGTCGATGAACACTGGACCACCGGCGGCGGCTCTGCCCCTTCTGACGGCAAACGGTGGCGGAAGCGGCGGCGGAAGTGGCGGCGAAAGCTCCTCCTCCGATAACAAACAAGCTAAATCAGCCTCTGCGGAAATGGACGGTGAAAACGGCGCCGTTGAAGCTGTACCTAGAAAATCTATTGACACATTCGGCCAAAGAACTTCCATATACCGTGGTGTAACCAGACATAGATGGACGGGAAGATACGAAGCTCATCTATGGGACAACAGTTGCAGACGAGAAGGACAAACAAGAAAAGGAAGACAAGGTGGCTATGACAAAGAAGAAAAGGCTGCAAGAGCCTATGATTTAGCAGCTCTGAAATATTGGGGCTCCACCACCACCACCAATTTTCCAATTAGTGATTATGAGAAAGAAATGGAAGATATGAAGCATATGACAAGGCAAGAATTTGTAGCGTCTCTAAGAAGGAAGAGTAGCGGGTTTTCTCGTGGAGCTTCCATTTATCGTGGAGTAACGAGACACCATCAGCACGGGAGATGGCAAGCGAGAATAGGGCGAGTTGCTGGGAACAAAGATCTCTACTTGGGAACTTTCAGTACGCAAGAGGAAGCAGCAGAAGCATATGACACGGCGGCGATAAAGTTCCGGGGACTAAATGCGGTGACCAACTTCGATATGAGTCGTTATGACGTTAAAGCCATTCTCGAAAGCAATACATTACCTATCGGTGGTGCTGCAAAGCGTTTAAAAGATATCGTTCATTCTGATATTGATCCACAACGAAGCGATGAGAACATAAGTTCGCACATTTCTGATGGAATAATCACCGCTGCCGCCGCCCCTTACGGTGGCGGTGGATGGCCAAGTCTTGCCTTCCACCACCATCCGTACGCCTTCCACTACCCGTACGCCGCCACACAGCAACGACTATGGTGCAAGCAAGAGCACGACGCCACCGTCGCCGCTGCAGACAACTTCTTCCCACACGGCGGAGCCATGGACTCAATGGATCATGGGGTTTACAGCGGGGGTGGAAGTGGAGACGGGTACGGCGGGAACTTCCTGATTTCGATGGCGGCCGGGGCGGAAGCCGGGAGCAGCAGCAGCAACAACAATGGTGGTGGGTTGGGAGAAATTGGAGAAGTGAATTTGTTTGGATGTTCTTCTAACGTGGATGATCCATACCATGCAACAAGAACCACCACCAATTTGTACGATTATAACAATTCCTCTCATCAGCTGCCACCGCCCACGACGGCGCTACAGCAATGCAACAACTGGCTTCCACCAGCCCGGACGGTTTGTCACGGCGGAGCTCCGCCGCCTTTCACCATATGGAATGACACTTAA 2028 50.59 MELHQISLTSNTKIYFLSISFKIPSSFFSSMGSMNWLGFSLSPQEQHSDHHHGGGGGGSVGGDGPFTSDNISGSAVCFDNLPSSYGVYEPFHRNNHSQDWNNLKGLGSAQSSDFSALIETQQPPKLENFLGHHSFTDHDHAVVYTNASGNYMFQNCSLELPSDPANCGGGKANDNGNNNGSSIGLSMMKTWLRNQPAPPQAVAKYGGNHDGAVRSGNITNAHSLSLSMNTGPPAAALPLLTANGGGSGGGSGGESSSSDNKQAKSASAEMDGENGAVEAVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGSTTTTNFPISDYEKEMEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDTAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGAAKRLKDIVHSDIDPQRSDENISSHISDGIITAAAAPYGGGGWPSLAFHHHPYAFHYPYAATQQRLWCKQEHDATVAAADNFFPHGGAMDSMDHGVYSGGGSGDGYGGNFLISMAAGAEAGSSSSNNNGGGLGEIGEVNLFGCSSNVDDPYHATRTTTNLYDYNNSSHQLPPPTTALQQCNNWLPPARTVCHGGAPPPFTIWNDT 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9385816 9389727 + CmoCh12G010040.1 Cmo12g01004 393692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01004 675 MobiDBLite consensus disorder prediction 44 65 - -
Cmo12g01004 675 SUPERFAMILY DNA-binding domain 293 359 IPR016177 GO:0003677
Cmo12g01004 675 Pfam AP2 domain 294 349 IPR001471 GO:0003700|GO:0006355
Cmo12g01004 675 Pfam AP2 domain 393 443 IPR001471 GO:0003700|GO:0006355
Cmo12g01004 675 CDD AP2 392 453 IPR001471 GO:0003700|GO:0006355
Cmo12g01004 675 Gene3D AP2/ERF domain 393 453 IPR036955 GO:0003700|GO:0006355
Cmo12g01004 675 Gene3D AP2/ERF domain 294 359 IPR036955 GO:0003700|GO:0006355
Cmo12g01004 675 CDD AP2 293 359 IPR001471 GO:0003700|GO:0006355
Cmo12g01004 675 PANTHER BNAC02G44180D PROTEIN 34 552 - -
Cmo12g01004 675 ProSiteProfiles AP2/ERF domain profile. 393 451 IPR001471 GO:0003700|GO:0006355
Cmo12g01004 675 MobiDBLite consensus disorder prediction 237 279 - -
Cmo12g01004 675 SUPERFAMILY DNA-binding domain 392 453 IPR016177 GO:0003677
Cmo12g01004 675 PRINTS Ethylene responsive element binding protein signature 433 453 IPR001471 GO:0003700|GO:0006355
Cmo12g01004 675 PRINTS Ethylene responsive element binding protein signature 295 306 IPR001471 GO:0003700|GO:0006355
Cmo12g01004 675 MobiDBLite consensus disorder prediction 248 267 - -
Cmo12g01004 675 SMART rav1_2 294 363 IPR001471 GO:0003700|GO:0006355
Cmo12g01004 675 SMART rav1_2 393 457 IPR001471 GO:0003700|GO:0006355
Cmo12g01004 675 ProSiteProfiles AP2/ERF domain profile. 294 357 IPR001471 GO:0003700|GO:0006355
Cmo12g01004 675 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 34 552 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00384 Cmo12g01004 CCT
Cmo11g00384 Cmo12g01004 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00637 Cmo-Chr7:2876799 Cmo12g01004 Cmo-Chr12:9385816 4.68E-111 dispersed
Cmo12g00550 Cmo-Chr12:3388854 Cmo12g01004 Cmo-Chr12:9385816 5.63E-06 dispersed
Cmo12g01004 Cmo-Chr12:9385816 Cmo20g00077 Cmo-Chr20:403519 9.91E-129 dispersed
Cmo11g00384 Cmo-Chr11:1921034 Cmo12g01004 Cmo-Chr12:9385816 4.95E-88 transposed
Cmo10g00480 Cmo-Chr10:2144602 Cmo12g01004 Cmo-Chr12:9385816 1.38E-07 wgd
Cmo12g01004 Cmo-Chr12:9385816 Cmo05g00837 Cmo-Chr5:5236754 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10764 PF00847 AP2 2.80E-09 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01004 K09285 - csv:101219473 940.258