Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01014 ATGGCAATAAGCCAAATTGAAGCCAAATTGAAGCCAAAAAGTGGCTGTAAACAGATGGATAGCCCGACGACGACACCAAGCTCAGCTCCTAATTCGTCACCAGTCTCGAATCCTGGTTCGAATGATGAAACCCCGCGTGTTAAATTCCTGTGTAGTTTCTTGGGGAATATAATGCCTCGGCCCCAAGATAGTAAGCTTCGGTATGTTGGGGGCGAGACGAGGATTGTGAGCGTTCCGAGGGATACGACATATGAGGAGTTGATGATTAAGATGAAGGAACTTTATGAAGGGGCTGCTGTGTTGAAGTACCAGCAACCGGATGAGGATCTTGATGCTCTTGTGTCTGTTGTGAATGATGATGATGTGATTAACATGATGGAAGAGTATGATAAGGTGGGTTCGGGAGACGGGTTCACTAGGCTCAGGATATTCTTGTTTTCGCATCCCGATCAAGATGGTTCGTTGTCCTTTGTCGATGGCGATGAGAGGAATACCGAGAGACGATATGTGGATGCCCTTAATAATTCGAATGACATTAATGATTTTGTTAGACAGCAGCAGCCAGATTCCCCTGTAATCAATGGCATAGACGATGTGCACGGGTCAGAACATTTTTTGAATCCGTTGAATATCGAAGGTAGTCTTCACTCCCAGAGAAGTTGCGAGCCGTTGTCACAATATCACCTGCATCAGCTCACAATTCCTCATGTTGGATCTGGGCAGCAACAACAATCTGTAACTCAAAGGTATGGTGAAATGGAAGCTCCATGGAGTCCTGCTTTACTTTCACCCAGGCATCACGGTCCGTTTGATTCAAGACCAGTCAGCGAATATCCATCTTCTCCATCCGCACGGTACCGTATGCCATTCCCAGAGTTGCCAGATAAATATTTGGAAAGAATGCCTGAAGACTATGCGAGGCAGCAAATGACTCACCAACACATGTATGAACATCAACCGCTATATAACGAGAATGTTGTCTGGATGCCAAATGGAACAATTACTGAAAAGTCAGGTTTTCCGGGTAATATATTACACGGACATGGTGTTCCTGATGCGAATAGTTCTTGTGAAAAGTGCCGAGCCAATTTCCATCGGTATCAAACACCCGTGGAGCAAGCTACGATGTTAAATGGACTTCCTCCTGAATACCCTCAGAATAGGGAGGTCCTGATGCAAAAAGCCGACATGAAGTTTCGTCATGGTAATTTCCCAAATGAGCAAAATATTAACGATCATCGACCTGCTTATAATGACACACCTCCCCACGAGAGAGGATGGATTACGCAACATCAGATGAGTGTTCGGGGGGGTGACACGAGAGCACATGTTTCTGGAGTGGGACGATTGAACGATCACTACATTGTGGATGGTTCTGGTTCAAATTTTCCTCCTACACAGAGTAATGTAACTGATGGCTACCATGCTTCCCCGAATTTTCATGATGAGGTGTTCCGTGACCCGGTTTTGCCTAGCGGACCGCATATGTGTGTTTCTCCTGCTGAAGATCGTGGCGTTGGCTATATGAATATGCCGTATGGATATGGAGGAGATCTTCCGATGGCACACAGGCAAATCCCGCCTGGAAATGCCTTGTGGCGAAATGTTCAGAATCCATTGCATATTTCTCCCCCTTATGATGGACCCGTTTCCCTTCAGCACGGGAATGCTACTGTAAATCCGGGATATATCAGAGGCATGCAGGAGGGTAGTCCACGGATTCATATCGGTATGGACCACCAAAATCCTTGGAATGAATCCTCACAAAAAATGCTGGGTATCGACGGAGCAACTGGTTCAGAGCATTTACCTCCGCATGTTTCGAAGACTAACTCCACTATTATGGAACATGTCCTACCACATCTAGATAAGATAAACCTGGTCGACTCGTCTGCACAGTGGTCGGATTCGTCTTCAGGATTTGTTCATGAAAAAGTTGTTGCACCATTTCATTCTAGCCAAAATCCACAGCCAAGCGCGGTTAGTGTGGTTAATGAAGCTATGATGATGGAAAGAAAAATTGTGCCTGTAGAAGGAGACCGACACGTCGTAACCGATATGGGGAAAGTTGACATCGCCGATGTACACACTGTTTCTCATCCAGAGCAGAAAAACACTGATGATACATATTCCAAGGTCGTACCCCCTGAACTGTTAAATTCAAATTGCACGAACAATGCAGTAGAGAACGGTGATAGCTTGGAACCGGCCAAGGAGACTCTAGAAGAGCCAAAACTTTCTGTCGACCGTCTGAGATTTTTACCCGAGTTGATTGCATCTGTGAAGAGAGCAGCATTGGAAGTATCTGAAGGGGCAATGATTGAAGAAACAGCTTCAGGGAGACCTGATTCAATCGACAAAAAAGAGGCTGCAAACGAGAATGCGCACGAGAAACCCGAGTTGGAAACTGAGAATGACAATCAAAGCTCTGGAATTGAGCCAACAAAGGCAGAAGCAGAAGCAATATCAAGAGGATTACAAACAATTAAAAACGATGATCTGGAGGAGATTCGAGAACTCGGGTCTGGAACCTATGGTGCTGTTTATCATGGGAAATGGAGAGGTTCGGATGTCGCAATAAAGAGGATCAAAGCTAGCTGTTTTTCTGGTCGGCCCTCGGAAAGGGAACGTCTGATAGCGGATTTTTGGAAGGAAGCTTTGATGTTAAGTTCTTTACACCATCCAAACGTTGTCGCTTTCTACGGTATCGTTCGTGATGGACCTGATGGGTCCTTAGCAACAGTAACAGAATTCATGGTGAATGGATCGTTGAAACAGTTTTTGCACAAGAAGGACAGGACCATCGATCGTCGTAAACGACTCATTATAGCTATGGATGCTGCATTTGGGATGGAGTATTTGCACGGGAAGAACATCGTACATTTCGATTTGAAATGTGAAAACCTTTTAGTGAATATGAGAGATCCTCATAGGCCTGTTTGCAAGATTGGTGATTTGGGGTTGTCAAAGGTGAGACAACACACGTTAGTATCGGGAGGGGTTCGCGGAACTTTGCCATGGATGGCACCGGAGCTTCTTAGCGGGAAAAGTAATATGGTCACGGAGAAGATTGATGTTTACTCGTTCGGGATCGTTATGTGGGAACTGCTCACGGGAGACGAACCATATTCAGATATGCATTGTGCTTCTATAATCGGAGGAATCGTGCACAATTCGTTACGTCCAGAAATCCCGACATGGTGCGACCCAGAATGGAAGGCTTTAATGTCGAGCTGTTGGGACTCGGACCCAGCAACGAGGCCATCATTTTCAGAAATCTCTCAGAAGCTAAGGAACATGGCAGCTGCAATGAATGCTATTACCCTACAAACTAAGGTCGTTTGCTCTACATTGCATTGCTGGGAGCCCTACAACAAGTACAGATATGAGGAGATATCCATGATATGCAATGGGAATGATTTCACTTGGGATTTCGCCGTTCGAAGCGTACGGTATTGGTACGATATATATATATATGTTGATTCTGCTATAGTTTTCTGGGAAACCTGTTGTTTTTTGTTTTTCCTTTGTTATTTTTCACTTCTGTGGTGGGAGTTTTTGTAA 3564 45.06 MAISQIEAKLKPKSGCKQMDSPTTTPSSAPNSSPVSNPGSNDETPRVKFLCSFLGNIMPRPQDSKLRYVGGETRIVSVPRDTTYEELMIKMKELYEGAAVLKYQQPDEDLDALVSVVNDDDVINMMEEYDKVGSGDGFTRLRIFLFSHPDQDGSLSFVDGDERNTERRYVDALNNSNDINDFVRQQQPDSPVINGIDDVHGSEHFLNPLNIEGSLHSQRSCEPLSQYHLHQLTIPHVGSGQQQQSVTQRYGEMEAPWSPALLSPRHHGPFDSRPVSEYPSSPSARYRMPFPELPDKYLERMPEDYARQQMTHQHMYEHQPLYNENVVWMPNGTITEKSGFPGNILHGHGVPDANSSCEKCRANFHRYQTPVEQATMLNGLPPEYPQNREVLMQKADMKFRHGNFPNEQNINDHRPAYNDTPPHERGWITQHQMSVRGGDTRAHVSGVGRLNDHYIVDGSGSNFPPTQSNVTDGYHASPNFHDEVFRDPVLPSGPHMCVSPAEDRGVGYMNMPYGYGGDLPMAHRQIPPGNALWRNVQNPLHISPPYDGPVSLQHGNATVNPGYIRGMQEGSPRIHIGMDHQNPWNESSQKMLGIDGATGSEHLPPHVSKTNSTIMEHVLPHLDKINLVDSSAQWSDSSSGFVHEKVVAPFHSSQNPQPSAVSVVNEAMMMERKIVPVEGDRHVVTDMGKVDIADVHTVSHPEQKNTDDTYSKVVPPELLNSNCTNNAVENGDSLEPAKETLEEPKLSVDRLRFLPELIASVKRAALEVSEGAMIEETASGRPDSIDKKEAANENAHEKPELETENDNQSSGIEPTKAEAEAISRGLQTIKNDDLEEIRELGSGTYGAVYHGKWRGSDVAIKRIKASCFSGRPSERERLIADFWKEALMLSSLHHPNVVAFYGIVRDGPDGSLATVTEFMVNGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPHRPVCKIGDLGLSKVRQHTLVSGGVRGTLPWMAPELLSGKSNMVTEKIDVYSFGIVMWELLTGDEPYSDMHCASIIGGIVHNSLRPEIPTWCDPEWKALMSSCWDSDPATRPSFSEISQKLRNMAAAMNAITLQTKVVCSTLHCWEPYNKYRYEEISMICNGNDFTWDFAVRSVRYWYDIYIYVDSAIVFWETCCFLFFLCYFSLLWWEFL 1187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9478314 9484226 + CmoCh12G010140.1 Cmo12g01014 393702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01014 1187 Pfam PB1 domain 63 146 IPR000270 GO:0005515
Cmo12g01014 1187 PRINTS Tyrosine kinase catalytic domain signature 916 929 IPR001245 GO:0004672|GO:0006468
Cmo12g01014 1187 PRINTS Tyrosine kinase catalytic domain signature 1024 1046 IPR001245 GO:0004672|GO:0006468
Cmo12g01014 1187 PRINTS Tyrosine kinase catalytic domain signature 1068 1090 IPR001245 GO:0004672|GO:0006468
Cmo12g01014 1187 PRINTS Tyrosine kinase catalytic domain signature 953 971 IPR001245 GO:0004672|GO:0006468
Cmo12g01014 1187 SUPERFAMILY Protein kinase-like (PK-like) 822 1095 IPR011009 -
Cmo12g01014 1187 SMART serkin_6 834 1103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01014 1187 Pfam Protein tyrosine and serine/threonine kinase 835 1097 IPR001245 GO:0004672|GO:0006468
Cmo12g01014 1187 Gene3D Phosphorylase Kinase; domain 1 819 920 - -
Cmo12g01014 1187 Gene3D Transferase(Phosphotransferase) domain 1 921 1127 - -
Cmo12g01014 1187 MobiDBLite consensus disorder prediction 17 43 - -
Cmo12g01014 1187 MobiDBLite consensus disorder prediction 775 812 - -
Cmo12g01014 1187 CDD STKc_MAP3K-like 840 1097 - -
Cmo12g01014 1187 PANTHER SERINE-THREONINE PROTEIN KINASE 37 1105 - -
Cmo12g01014 1187 ProSitePatterns Serine/Threonine protein kinases active-site signature. 959 971 IPR008271 GO:0004672|GO:0006468
Cmo12g01014 1187 SUPERFAMILY CAD & PB1 domains 63 152 - -
Cmo12g01014 1187 ProSiteProfiles Protein kinase domain profile. 834 1100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01014 1187 ProSitePatterns Protein kinases ATP-binding region signature. 840 861 IPR017441 GO:0005524
Cmo12g01014 1187 MobiDBLite consensus disorder prediction 1 43 - -
Cmo12g01014 1187 MobiDBLite consensus disorder prediction 780 804 - -
Cmo12g01014 1187 CDD PB1_UP2 50 146 - -
Cmo12g01014 1187 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 37 1105 - -
Cmo12g01014 1187 Gene3D - 65 148 - -
Cmo12g01014 1187 SMART PB1_new 61 146 IPR000270 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00706 Cmo12g01014 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01014 Cmo-Chr12:9478314 Cmo18g00250 Cmo-Chr18:1655442 4.93E-28 dispersed
Cmo12g01014 Cmo-Chr12:9478314 Cmo05g00706 Cmo-Chr5:3625543 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74735 PF07714 PK_Tyr_Ser-Thr 1.20E-61 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01014 - - csv:101215475 1869.36