Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01030 ATGGAAGAGTTTTACAGGCTCAACAGCTCTGTTATATCCGCATACACTAATGGAGTTGTTGCTAGTGAGGCCATTGCAAGCACTAGCTCTGGTGGAGTTCATGGAGCTCAAATGATGAACAATGAAATGATTCAGCTGGAAGCTGAGTCCACTACTGGCTTGAACATGTCTGAAATCATCAAAACTCAAATTGTCAACCATCCCCTTTATTGCAAACTGGTTTCTGCTTACATTGAATGCCAAAAAGTTGGAGCTCCACCACAAGTGGCTTGTCTTCTTGAAGAAATTGGTCGTGAAAATCACCCTCCTAGGTCATGTATTGTGCTGGGAGCTGATCCTCAACTCGACAACTTTATGGAGTCATACTGTGGAGTTCTTCATCAATACAAGAATGAGCTAACCAAGCCATTTGATGAAGCAACAATGTTCTTAACCAACATTGAATTGGAGCTGAGCAACCTATGTAAAGGATCATTTACCGCAACGTCGGATTCTCGTCCCGCCACGAATGACGAAGTAGCCGAGACGCCGGAGGACGAACCGAGCAGCTACCGGGAAGTCGAGATGCCGGGAAATCACGAGCCATTCGGCACGAGACAAACGAACCAAGACCTCAAAGAAATGCTGCTGAAGAAATACAGTGGCTATCTAAGCAGTTTGAAGAAGGATTTCCTTAAAAAAAGGAAGAAAGAGAAGCTTCCAAAGGATGCAAGAATGGCCTTATTTGATTGGTGGAACACTCATTACAAATGGCCATATCCCACGGAAGAGGAAAAATCAAAACTTTCTGGTATTACTGGTTTGGATCAGAAGCAGATCAATAACTGGTTCATTAACCAGCGAAAACGGCATTGGAATCCGCCCGAAGAAATGCGATTCGCGCTCATGGACAGTGTCGGGACCGGGGTCGGGGTCGGGGTTGGGGAATGCATCAAAGGTTCAAAATTTTATGACAATGGAGAAACAGGAGGCCGTGTTGTTTAG 984 45.02 MEEFYRLNSSVISAYTNGVVASEAIASTSSGGVHGAQMMNNEMIQLEAESTTGLNMSEIIKTQIVNHPLYCKLVSAYIECQKVGAPPQVACLLEEIGRENHPPRSCIVLGADPQLDNFMESYCGVLHQYKNELTKPFDEATMFLTNIELELSNLCKGSFTATSDSRPATNDEVAETPEDEPSSYREVEMPGNHEPFGTRQTNQDLKEMLLKKYSGYLSSLKKDFLKKRKKEKLPKDARMALFDWWNTHYKWPYPTEEEKSKLSGITGLDQKQINNWFINQRKRHWNPPEEMRFALMDSVGTGVGVGVGECIKGSKFYDNGETGGRVV 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9633083 9636387 + CmoCh12G010300.1 Cmo12g01030 393718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01030 327 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 298 - -
Cmo12g01030 327 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 1 298 - -
Cmo12g01030 327 CDD homeodomain 236 287 IPR001356 GO:0003677
Cmo12g01030 327 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677|GO:0005634
Cmo12g01030 327 SMART ELK_2 204 225 IPR005539 GO:0003677
Cmo12g01030 327 SMART HOX_1 226 291 IPR001356 GO:0003677
Cmo12g01030 327 SMART KNOX1_2 58 102 IPR005540 GO:0003677|GO:0005634
Cmo12g01030 327 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677|GO:0006355
Cmo12g01030 327 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677
Cmo12g01030 327 Gene3D - 222 294 - -
Cmo12g01030 327 MobiDBLite consensus disorder prediction 161 199 - -
Cmo12g01030 327 Pfam ELK domain 204 225 IPR005539 GO:0003677
Cmo12g01030 327 Pfam KNOX2 domain 109 155 IPR005541 GO:0003677|GO:0005634
Cmo12g01030 327 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677
Cmo12g01030 327 SUPERFAMILY Homeodomain-like 226 296 IPR009057 -
Cmo12g01030 327 SMART KNOX2_2 103 156 IPR005541 GO:0003677|GO:0005634
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g01140 Cmo12g01030 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01030 Cmo-Chr12:9633083 Cmo18g00789 Cmo-Chr18:9414147 6.88E-77 dispersed
Cmo12g01030 Cmo-Chr12:9633083 Cmo05g01084 Cmo-Chr5:8704389 2.48E-174 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10766 PF03791 KNOX2 8.20E-21 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01030 - - cmos:111443969 631.713