Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01034 ATGTGTTGCGACGGCGAAGGGCTCCTTTTGGTCCAAAAGGTCTCGGAACTTTACCACAAAATCTCCACTCTCCAAAGCCTCCAACCCTCCAAACATGTCAACTCCCTCTTCTCTCAGCTCGTCCTCACCTGCACCCCTCCGCCGCCTCCTCCACCGTCTCCGCCGCTCATCGACATCTCCAAGCTCAGCTCGACCGTCCAAACCATGAGATCCCATCTCATCAAGCTCTGCGGCCAAGCCGAGGGCTTACTCGAGCACCATTACTCGACCATCTTAGCCTCCCACCAGAACCCTCTTGACCATCTCTCCCTTTTCCCTTACTACTCCAACTACCTCAAACTAACCCATCTCGAATTCTCCATTCTGACCCGTTACATATCATCCTCCCTACCGTCCAAAGTGGCATTCATTGGCTCTGGTGCTCTCCCGTTCTCGTCCATCATCATGGCTTTGAAATACCTCCCGACGACTGAGTTTCACAACTTTGATGTCGACTCATCTGCTAATGCCAAGGCTACGGCGCTCGTGGCAAGCGACGTGGACTTGTCGAGGCGGATGTCATTCCACACTACTGATATCATGGACGTCACCTCGGACATGTTGGGAGAGTTCGAGGTGGTGTTTTTGGCAGCGTTGGTGGGAATGGAGAAAGAGGAGAAAGTTAAGGTAATCGAGCATTTACGAAAGAACATGACTAGTGGCTCGTTGTTGATGTTGAGAAGCGCGTATGGTGCACGTGCGTTTCTTTATCCAGTGGTGGAAGCTTCTGATCTTCGAGGGTTTGAGATTCTTACGACGTTTCATCCTACTGATGATGTTGTCAATTCGATCGTGTTGGCTCGATTATAA 849 51.0 MCCDGEGLLLVQKVSELYHKISTLQSLQPSKHVNSLFSQLVLTCTPPPPPPPSPPLIDISKLSSTVQTMRSHLIKLCGQAEGLLEHHYSTILASHQNPLDHLSLFPYYSNYLKLTHLEFSILTRYISSSLPSKVAFIGSGALPFSSIIMALKYLPTTEFHNFDVDSSANAKATALVASDVDLSRRMSFHTTDIMDVTSDMLGEFEVVFLAALVGMEKEEKVKVIEHLRKNMTSGSLLMLRSAYGARAFLYPVVEASDLRGFEILTTFHPTDDVVNSIVLARL 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9648707 9649555 - CmoCh12G010340.1 Cmo12g01034 393722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01034 282 Pfam Nicotianamine synthase protein 9 281 IPR004298 GO:0030410|GO:0030418
Cmo12g01034 282 Gene3D Vaccinia Virus protein VP39 56 282 IPR029063 -
Cmo12g01034 282 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 2 282 IPR004298 GO:0030410|GO:0030418
Cmo12g01034 282 PANTHER NICOTIANAMINE SYNTHASE 3 3 281 IPR004298 GO:0030410|GO:0030418
Cmo12g01034 282 PANTHER SYNTHASE, PUTATIVE-RELATED 3 281 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01291 Cmo12g01034 CCT
Cmo05g01085 Cmo12g01034 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01291 Cmo-Chr11:8760626 Cmo12g01034 Cmo-Chr12:9648707 1.82E-109 dispersed
Cmo10g00434 Cmo-Chr10:1981529 Cmo12g01034 Cmo-Chr12:9648707 3.48E-94 wgd
Cmo12g01034 Cmo-Chr12:9648707 Cmo05g01085 Cmo-Chr5:8710688 1.60E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01034 K05953 - csv:101219339 427.557