Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo12g01048 | ATGGCTCATACCAGCAATACTGCAGCTGGAGTTGATAACACGTTTAGAAGAAAATTTGATCGAGAGGAGTATTTGGAACGAGCTCGTGACCGTGAAAAACAGGAGGCTGAGAGGGTTAAGTCTAAATTGAAAGGTCCACCAGTGCAAAGAAAACCACTGAAACATAGAGATTATGAGGTAGACCTCAATTCTCGATTGGGAAAAACCCAGGTTGTCACTCCAGTCGCACCTCTAAGCCAGCAGGCTGGATACTACTGTTCCGTTTGTGAATGCGTGGTCAAGGATTCTGCAAATTACTTGGATCACATCAATGGAAAGAAACATCAGAGAGCCTTGGGTATGTCCATGCGGGTAGAACGAGCATCTCTCGAACAGGTACAAGAGCGATTTGAAGTTCTTAAAAAGAGAAAAACGCCGGGAAGCTTCACAGAGCAAGATCTCGAAGAGCGTATAATAAAACAGCAAGAAGAAGAAGAACAACGGAAGCGCGAGCGCCGAGAAAGGAAGAAAGAAAAGAAGAAAGAGAAGGCTGCAGAAGATGAACCCGAAGTAGATCCCGACGTTGCTGCAATGATGGGGTTCGGGGGTTTCCGTTCATCCAAGAAGTGA | 609 | 45.65 | MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEVDLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKEKKKEKAAEDEPEVDPDVAAMMGFGGFRSSKK | 202 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 9714943 | 9718201 | - | CmoCh12G010480.1 | Cmo12g01048 | 393736 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo12g01048 | 202 | SMART | ZnF_U1_5 | 81 | 115 | IPR003604 | GO:0003676|GO:0008270 | |
| Cmo12g01048 | 202 | MobiDBLite | consensus disorder prediction | 148 | 202 | - | - | |
| Cmo12g01048 | 202 | Pfam | Zinc-finger of C2H2 type | 84 | 108 | - | - | |
| Cmo12g01048 | 202 | MobiDBLite | consensus disorder prediction | 26 | 53 | - | - | |
| Cmo12g01048 | 202 | Coils | Coil | 116 | 136 | - | - | |
| Cmo12g01048 | 202 | SUPERFAMILY | beta-beta-alpha zinc fingers | 79 | 125 | IPR036236 | - | |
| Cmo12g01048 | 202 | Coils | Coil | 22 | 42 | - | - | |
| Cmo12g01048 | 202 | MobiDBLite | consensus disorder prediction | 148 | 183 | - | - | |
| Cmo12g01048 | 202 | Coils | Coil | 144 | 181 | - | - | |
| Cmo12g01048 | 202 | Gene3D | Classic Zinc Finger | 79 | 116 | - | - | |
| Cmo12g01048 | 202 | PANTHER | ZINC FINGER MATRIN-TYPE PROTEIN 2 | 7 | 202 | IPR040107 | GO:0000398|GO:0005681 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo12g01048 | Cmo-Chr12:9714943 | Cmo05g01094 | Cmo-Chr5:8742823 | 1.72E-16 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 10769 | PF12171 | zf-C2H2_jaz | 1.80E-06 | CL0361 | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo12g01048 | K12848 | - | csv:101206387 | 331.643 |