Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01056 ATGGCGTCGAGGAATCGGACTTTGGTTTTTAGGAAATACAGGGACGCGTTAAGGAGTGTGAGGGCTCCTACCAGCTCTTCGCCTGCTTGTCCGTCGCCATCGACTAGTTCTGGCGCTGGTGGACCAGTAATTGAATTGGTTAGCTCGTCGTTGTTGCATCCGAATCGGTCGTATGCTCCCTTAAGTACCGAGGATCCGGGTAATTCAAGTAAGGGCGCTCTCACTGTGGGTCTACCTCCGTCTTGGGTCGATGTATCCGAAGAAATAGCTGCAAATGTGCAGCGTGCACGAGTGAAGATGGTGGAGTTAGCTAAAGCTCATGGAAAGGCTTTGATGCCTTCATTTGGAGATGGTAAAGAAGATCAACAGCTAATCGAGTCTCTAACGCAAGACATAACTAATTTAATCAAGAAATCAGAGAAGGGACTCAGGAAATTCTCTGTGGCTGGACCTTCGGAAGATTCCAATATCAGAAAAAACGTTCAGCGATCCCTTGCCACCGACCTTCAGAACCTTTCCATGGAGCTTCGGAAGAAACAATCTACTTATTTGAAGCGCCTACGGCAGCAAAAAGAGGAAGTTCAAGATGGGATTGACATAGAGATGAATCAAAATGGAAATAGATCAAGAATGGAGGACGATGATTTAGAAGACATGGAATTCAATGAGCATCAGATGGCTAAGGTGCGAAAGAATGAAGCATTCACTGCCGAAAGAGAGAAGGAGATCCAACAAGTTGTCGAATCCGTGAATGAGCTTGCTCAGATCATGAAGGATCTATCAGTTCTTGTCATAGACCAGGGCACTATTATCGATAGAATAGATTATAATATTCAAAATGTTGCAACGACAGTTGACGAGGGCCTTAAGCAACTCGAGAAGGCGGAGAGAACGCAGAAAAAAGGCGGGATGGTAATGTGTGCAAGCGTTCTCATTATCATGTGCTTTGTCATGTTGGTCCTCTTGATCCTTAAAACCATACTATTTTGA 990 44.95 MASRNRTLVFRKYRDALRSVRAPTSSSPACPSPSTSSGAGGPVIELVSSSLLHPNRSYAPLSTEDPGNSSKGALTVGLPPSWVDVSEEIAANVQRARVKMVELAKAHGKALMPSFGDGKEDQQLIESLTQDITNLIKKSEKGLRKFSVAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEEVQDGIDIEMNQNGNRSRMEDDDLEDMEFNEHQMAKVRKNEAFTAEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVDEGLKQLEKAERTQKKGGMVMCASVLIIMCFVMLVLLILKTILF 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9759088 9763460 - CmoCh12G010560.1 Cmo12g01056 393744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01056 329 PANTHER SYNTAXIN-43-LIKE 1 324 - -
Cmo12g01056 329 Pfam SNARE domain 269 321 IPR000727 -
Cmo12g01056 329 SUPERFAMILY t-snare proteins 78 288 IPR010989 GO:0016020|GO:0016192
Cmo12g01056 329 SMART SynN_4 73 188 IPR006011 GO:0016020
Cmo12g01056 329 MobiDBLite consensus disorder prediction 20 42 - -
Cmo12g01056 329 Coils Coil 184 204 - -
Cmo12g01056 329 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 233 295 IPR000727 -
Cmo12g01056 329 PANTHER SYNTAXIN 1 324 IPR045242 -
Cmo12g01056 329 CDD SNARE_syntaxin16 237 294 - -
Cmo12g01056 329 ProSitePatterns Syntaxin / epimorphin family signature. 239 278 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cmo12g01056 329 SMART tSNARE_6 228 295 IPR000727 -
Cmo12g01056 329 Gene3D - 79 287 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g01102 Cmo12g01056 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00644 Cmo-Chr6:3236126 Cmo12g01056 Cmo-Chr12:9759088 2.54E-13 dispersed
Cmo12g01056 Cmo-Chr12:9759088 Cmo16g01226 Cmo-Chr16:8783964 5.23E-11 dispersed
Cmo17g01031 Cmo-Chr17:8784234 Cmo12g01056 Cmo-Chr12:9759088 1.59E-147 transposed
Cmo12g01056 Cmo-Chr12:9759088 Cmo05g01102 Cmo-Chr5:8787283 3.98E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01056 K08489 - csv:101207998 562.377