Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01059 ATGGGGCATTTCTCCACCATGTTCAATGGTTTAGCAAGGTCATTTTCTTTCAAAAAAGGTAGAAATTCCGGGAGTTTAGGCAACGAGGGAGGTCGAGAAGCTGCAAAAGCCATGGTAAAGGAAGCGAAAAAGAAAGACTCGATATTATGCACCTCTGGCTTCCTCAATGCAGATGGCTCGGAGAGTTTTGCTTCGGTGTTCTCGAAACGAGGCAACAAAGGAGTAAACCAAGATTGCTGCATCGTATGGCAGGAATTTGGATGCCAAGACGACATGTTATTTTGTGGAGTTTTCGATGGGCACGGACCGTGGGGTCATTTTGTCGCGAAAACGGTAAGAGAATCGATGCCACCATCGTTGCTGCACCATTGGCAACAAGGACTTGCTCAAGCTTTTCTTGAACCAGAATTGGATTCAGAAAAGAAGCATCAACGATTCGAGTTATGGAAGCATTCGTTTTTAAGAACTTGTGCTGCTATTGATCACGAGCTCGAGCAGCATCGAAAAATCGATACGGTTTACAGTGGAACAACTGCCCTGTCCATAGTTAAACAGGGTGAACTAGTCGTTTTAGCCAACGTTGGCGACTCTCGAGCAGTTTTGGCTACTACTTCAGATGATGGAAGTGTAGTACCGGTTCAGCTCACCGTCGATTTCAAACCGAACCTACCTCAGGAGGCCGAGCGGATTCGACAGTGCAACGGGCGGGTGTTTTGTTTAAGTGATGAGCCTGGAGTTCATCGAGTCTGGCTTCCCGACGAGGAATCGCCTGGATTGGCGATGTCGAGAGCGTTCGGTGATTATTGTATTAAAGAATTTGGGCTCATTTCAGTGCCAGAAGTGACATGTAGAAGCATAACTAGAAGAGACCAATTCATTATATTGGCAACTGATGGGGTATGGGATGTTGTTTCTAACCAAGAAGCAGTCGAGATTGTATCGTCGACATTGGATCGAGCAAAATCATCGAAACGTTTGGTCGAGTGTGCGGTTCGGGCATGGAAACGGAAGAGACGGGGCATTGCAATGGATGATATATCAGCTATCTGCCTCTTCTTCCACTCCTCATCAGATCAAGATCACCTTGTATCCTAG 1095 46.39 MGHFSTMFNGLARSFSFKKGRNSGSLGNEGGREAAKAMVKEAKKKDSILCTSGFLNADGSESFASVFSKRGNKGVNQDCCIVWQEFGCQDDMLFCGVFDGHGPWGHFVAKTVRESMPPSLLHHWQQGLAQAFLEPELDSEKKHQRFELWKHSFLRTCAAIDHELEQHRKIDTVYSGTTALSIVKQGELVVLANVGDSRAVLATTSDDGSVVPVQLTVDFKPNLPQEAERIRQCNGRVFCLSDEPGVHRVWLPDEESPGLAMSRAFGDYCIKEFGLISVPEVTCRSITRRDQFIILATDGVWDVVSNQEAVEIVSSTLDRAKSSKRLVECAVRAWKRKRRGIAMDDISAICLFFHSSSDQDHLVS 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9784265 9785916 - CmoCh12G010590.1 Cmo12g01059 393747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01059 364 SUPERFAMILY PP2C-like 64 354 IPR036457 -
Cmo12g01059 364 SMART PP2C_4 52 351 IPR001932 -
Cmo12g01059 364 ProSiteProfiles PPM-type phosphatase domain profile. 63 353 IPR001932 -
Cmo12g01059 364 Gene3D - 55 356 IPR036457 -
Cmo12g01059 364 CDD PP2Cc 63 353 IPR001932 -
Cmo12g01059 364 PANTHER ALPHABET, ISOFORM E-RELATED 1 361 - -
Cmo12g01059 364 Pfam Protein phosphatase 2C 76 327 IPR001932 -
Cmo12g01059 364 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 1 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g01232 Cmo-Chr10:12315055 Cmo12g01059 Cmo-Chr12:9784265 8.95E-171 dispersed
Cmo12g01059 Cmo-Chr12:9784265 Cmo17g00334 Cmo-Chr17:2018961 1.64E-156 dispersed
Cmo12g01059 Cmo-Chr12:9784265 Cmo05g01107 Cmo-Chr5:8818065 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01059 - - csv:101208725 669.463