Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01088 ATGCAAGATATCTTTGCTTCTGTTCGCCGATCATTGGTGTTTCGTGCTCCTGTTGAGAATGAGGATTCGCATTCTCCTGCAATTGGAGTTGGAGCCCTAGTTGATAAGATTAACTCCAGTATTAGGAAGTCGAGAGTGTTTTCTAGGCACTCGCCATCATCGTCGGCTTATCCTCCGATTCTCAAGGAAACTGAGCCTCCGATTCGATGGCGCAAGGGCGAGTTGATTGGCTGCGGCGCCTTTGGTCGGGTGTATATGGGCATGAATCTTGGCTCTGGCGAGCTTCTCGCTGTTAAACAGGTTCTGATTGCTGCAAATGGCGCTTCGAAGGAGAAAGCGCAGGCTCATGTTAAGGAGCTTGAGGAAGAAGTGAAACTTCTCAAGGATCTTTCTCATCCAAATATTGTTAGATATTTGGGCACGGTTAGGGAGGATGATTCTGTAAATATATTATTGGAATTTGTCCCTGGTGGATCAATATCATCTCTTTTGGGGAAATTTGGAGCCTTCCCTGAAGCAGTTATAAGAACATATACCAAACAGTTATTACTGGGACTGGAATACTTGCACAAGAATGGTATCATGCACAGGGACATTAAGGGGGCGAATATTCTTGTAGATAACAAGGGATGCATTAAGCTTGCTGATTTTGGTGCATCGAAACAGGTTGTCGAGCTGGCTACAATTTCAGGTGCAAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTAATTCTGCAGACTGGGCATAGTTTCTCTGCGGATATATGGAGTGTTGGATGCACTGTTATTGAGATGGCTACAGGAAAGCCTCCTTGGAGCCAACAGTATCAAGAGGTTGCTGCTCTTTTTCATATAGGCACAACAAAGTCTCATCCACCAATCCCTGAGCAGCTTTCTGTTGAAGCTAAAGATTTTCTGTTGAAATGTTTGCAGAAGGAACCCAACTTAAGACCAGCTGCATCTGAACTCCTGAAGCATCCTTTTGTTACTGGGGAGGACCCAGAATCTCTACTTGTATCACGTGATGCATGCACGGAGCCCTTGGATACCCATTCACTTTTATATACCTCAAACCTTGAAATGAGCAAAACTCCAACGCATCCTGGATCAAGTGATATTTGTAATTTGGATAGTCTGAGCTGCTCAAAACTATACACCGCAAACAAACTAGAAAATGATACGTGGGGAACAAACAGTGATAATGAAATGTGTCAGGTTGATGACAATGATGATTTTATGTTAGATGAAGTAAAACTCAGGTCTTCTATGACATCTGGGAATTTCAAGAGTTATAACCCAATCTGTGAGCCGTCGGATGACGAGGACTGCAAATTTGATCAAAGTTCAGTAGTAAAGCAAGGAAGCGATTTAGATGAGCAAACTCTAGCACCTGGCAGCTGTTCTGAAGTTTTTGATGATGACCAAAACTTCTCATTTCCTAGTGGACGATCACTTTCTGAAGATGAGGATGAGCTTACTGAATCAAAAATTAAAGCATTCTTGGATAAGAAGGCTCTTGAATTGAAGAAACTGCAGTCACCACTATATGAGGAGTTTTACAATAGTTTGAATGGATCCTGCTCTCCAGTTTTTGTAGAGAGTAAACAAGATGAAACTACTCCTAAATACTTGAAATTGCCCCCAAAAAGTCGGTCACCAAGTCGAAGTCCCGGTCATCTATCCCCAGCATTCGATGCCTTCGGCACTGGGACTCCAGGGAGTGATAGCAGCAGCAGGGGTAATGCAAATGATCAGAGGTCACAACTCAATGATTGGAAAGGACTTCTAGTTGATGGTCAGCCAGAAGCTGGTAGTCCAAGTAAACACTATTCTGAAATACAGAGGAAGTGGAAAGAAGAGCTTGATCAAGAGCTCGAGAGGAAACGAGAGATGATGCGTCAAGCTGGCACGGGAGGCAAAACGTCATCTCCAAAGGATAAAGCCATCAGCAGGCCGAGAGAGCGAACACGATTTGCATCTCCATTCCGGGACGACGCGTCGGGTGCAGGGAGGGAAAACAGGAAAAATTCATCTCCCGAGGAAGTGAGGAAAGATTAG 2067 44.12 MQDIFASVRRSLVFRAPVENEDSHSPAIGVGALVDKINSSIRKSRVFSRHSPSSSAYPPILKETEPPIRWRKGELIGCGAFGRVYMGMNLGSGELLAVKQVLIAANGASKEKAQAHVKELEEEVKLLKDLSHPNIVRYLGTVREDDSVNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPEQLSVEAKDFLLKCLQKEPNLRPAASELLKHPFVTGEDPESLLVSRDACTEPLDTHSLLYTSNLEMSKTPTHPGSSDICNLDSLSCSKLYTANKLENDTWGTNSDNEMCQVDDNDDFMLDEVKLRSSMTSGNFKSYNPICEPSDDEDCKFDQSSVVKQGSDLDEQTLAPGSCSEVFDDDQNFSFPSGRSLSEDEDELTESKIKAFLDKKALELKKLQSPLYEEFYNSLNGSCSPVFVESKQDETTPKYLKLPPKSRSPSRSPGHLSPAFDAFGTGTPGSDSSSRGNANDQRSQLNDWKGLLVDGQPEAGSPSKHYSEIQRKWKEELDQELERKREMMRQAGTGGKTSSPKDKAISRPRERTRFASPFRDDASGAGRENRKNSSPEEVRKD 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9974555 9980019 - CmoCh12G010880.1 Cmo12g01088 393776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01088 688 Coils Coil 617 637 - -
Cmo12g01088 688 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 46 568 - -
Cmo12g01088 688 SMART serkin_6 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01088 688 PANTHER ACTIVATED PROTEIN KINASE KINASE KINASE 3, MAPKKK3, MEKK3, PUTATIVE-RELATED 46 568 - -
Cmo12g01088 688 MobiDBLite consensus disorder prediction 573 593 - -
Cmo12g01088 688 MobiDBLite consensus disorder prediction 538 688 - -
Cmo12g01088 688 Coils Coil 103 130 - -
Cmo12g01088 688 MobiDBLite consensus disorder prediction 649 688 - -
Cmo12g01088 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Cmo12g01088 688 CDD STKc_MAPKKK 69 332 - -
Cmo12g01088 688 SUPERFAMILY Protein kinase-like (PK-like) 69 373 IPR011009 -
Cmo12g01088 688 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01088 688 Gene3D Transferase(Phosphotransferase) domain 1 69 362 - -
Cmo12g01088 688 MobiDBLite consensus disorder prediction 612 637 - -
Cmo12g01088 688 Pfam Protein kinase domain 71 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01088 688 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01088 Cmo-Chr12:9974555 Cmo03g01082 Cmo-Chr3:8095928 1.52E-89 dispersed
Cmo07g00375 Cmo-Chr7:1722788 Cmo12g01088 Cmo-Chr12:9974555 2.75E-20 transposed
Cmo17g00245 Cmo-Chr17:1450940 Cmo12g01088 Cmo-Chr12:9974555 0 transposed
Cmo12g01088 Cmo-Chr12:9974555 Cmo05g01151 Cmo-Chr5:9116620 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74736 PF00069 Pkinase 1.80E-71 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01088 K20606 - csv:101209358 1155.97