Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01101 ATGGCATTAGAAGCTGTTGTTTTCTCTCAAGATCTTTACTCCTTGTTTGCTGGAGGCCTCAGCTTTGAATATCCTCAAATCCCTCATGATTTTCCCGAGAAACAAACAGAAAATCCGCCATTGGAGCTCGAATCAACAACACCAAACCCAGTTAAGCCAAGAAAACGACGACCCAAATCCCGCAAGAACAAACAAGAAATCGAGAATCAAAGAATGACCCACATCGCTGTTGAACGAAATCGAAGAAAACAGATGAATGAATATCTCTCTGTTCTTCGTTCTTTAATGCCAGATTCATATATTCAAAGAGGAGATCAAGCTTCAATCGTTGGTGGAGCTATAAATTTCGTTAAGGAGTTAGAACAACAAGTTCAGTTTCTCTCAACAGATTCAAGTTCTTGTTCTTCTTGTTCTTCTTCATGTTCTTCATCTTCACAAACTCAGAGCTCCTCCATTGCTGATATTGAAGTAACAATGGTGGAAAATCATGCTAATTTGAAAATCAGATCAAAAAAACGACCAAAACAGGTCTTGAAAATTGTAGCTGGATTGCAAGCTCTGTTCCTCTCTGTTCTTCATCTCAATATCTCAACGATGAACCAAGTTGTTCATTACTGTCTCAGTGTTAAGGTTGAAGATGACTGCAAGCTGAGCTCTGTTGATGAAATTGCTTGTGCTCTACATCAGTTGCTTAGTAGAATCGAAGAGGAATCTGTTATGAACTGA 726 38.84 MALEAVVFSQDLYSLFAGGLSFEYPQIPHDFPEKQTENPPLELESTTPNPVKPRKRRPKSRKNKQEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIVGGAINFVKELEQQVQFLSTDSSSCSSCSSSCSSSSQTQSSSIADIEVTMVENHANLKIRSKKRPKQVLKIVAGLQALFLSVLHLNISTMNQVVHYCLSVKVEDDCKLSSVDEIACALHQLLSRIEEESVMN 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10070288 10072470 + CmoCh12G011010.1 Cmo12g01101 393789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01101 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 134 IPR036638 GO:0046983
Cmo12g01101 241 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 135 241 - -
Cmo12g01101 241 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 33 132 - -
Cmo12g01101 241 Gene3D - 54 135 IPR036638 GO:0046983
Cmo12g01101 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 120 IPR011598 GO:0046983
Cmo12g01101 241 SMART finulus 75 126 IPR011598 GO:0046983
Cmo12g01101 241 PANTHER MAX DIMERIZATION, MAD 33 132 - -
Cmo12g01101 241 PANTHER MAX DIMERIZATION, MAD 135 241 - -
Cmo12g01101 241 MobiDBLite consensus disorder prediction 28 68 - -
Cmo12g01101 241 Pfam Helix-loop-helix DNA-binding domain 70 121 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01153 Cmo-Chr11:6624064 Cmo12g01101 Cmo-Chr12:10070288 1.15E-71 dispersed
Cmo12g00180 Cmo-Chr12:1176011 Cmo12g01101 Cmo-Chr12:10070288 1.27E-78 dispersed
Cmo12g01101 Cmo-Chr12:10070288 Cmo19g00245 Cmo-Chr19:1723747 4.62E-64 dispersed
Cmo04g00904 Cmo-Chr4:4555301 Cmo12g01101 Cmo-Chr12:10070288 3.37E-61 transposed
Cmo12g01101 Cmo-Chr12:10070288 Cmo05g01165 Cmo-Chr5:9203927 3.55E-124 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10772 PF00010 HLH 3.00E-10 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01101 - - cpep:111798037 353.984