Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01110 ATGTTGAGATTCCATGTGGGCGGGAAGGTGGTCGAGAGAGTTGACTTGTTGAGGAAGAAACACTGGACATGGCGGTTGGATCTGTGGCCATTCGCCATTCTTTATGTGGCCTGGCTTGCTGTTGTTGTTCCTAGTATTGACTTTGGGGATGCTCTCATTGTTTTGGGTGGACTTGTGGCTCTTCATGTTCTGGTCTTGCTTTTCACTGGTTGGTCGGTTGATTTCAAATGTTTTGTCCAGTACAGCAAGGTGTTCTTCTACAATCATTATTCTTTTTCTATAAATTTCGTACTTGCATTTGATGATTCTTATGAATTGCCATTACATTTGAGACGTTGGCTTATCATATGGTTTTCTGCAGTTAATAATATTTATCATGCTGATACATGCAAGATAGTTCCAGCAAAATTTTCGGGCTCAAAAGAAATTGTTTCGCTTCATTTTCGTAAGCTTCTGGCTGGTTCTGAATCTGCAATGGATATTGAGGAGATCTACTTTGATTTCAGAAAACAAAGATTCATTTATTCAAAGGAAAAGGAGACTTTCTGCAAGCTTCCTTACCCAACAAAAGAAACTTTTGGTTATTATCTAAAGAGTACTGGCTATGGCTCCGAGCCTAAAGTTGTAGCCGCCGTTGATAAATGGGGACGCAATATCCTGTTTACACTTTTTATGCTTTTCATGTTTGAATCAACAATGGCAAAAAGTCGGTTAAAGACCTTAAGTGAGTTAAGACGTGTCAGAGTGGATACTCAGACCTTAATGGTGCATCGGTGTGGAAAGTGGGTGAAGCTACCTGGAACTGAGCTTTTGCCTGGCGATGTTGTCTCCATTGGGCGTAATTCTGGTCAGAGTGGTGAAGATAAATCTGTACCTGCTGATATGCTTATATTGGCTGGAAGTGCTATTGTTAATGAAGCCATTCTTACTGGGGAGTCTACACCACAATGGAAGGTTTCAGTATCTGGGAGAGGAATTGAGGAGAAGTTATCGGCTAAGAGAGACAAGAGTCACATGTTATTTGGTGGAACCAAAATATTGCAGCATACGCCAGATAAGACCTTTCCCCTTAGGACCCCTGATGGTGGCTGCCTAGCAGTTGTTTTGAGAACTGGATTTGAAACAAGTCAAGGGAAACTAATGCGGACAATTTTGTTTTCTACAGAGAGGGTTACAGCTAACAGTTGGGAAAGTGGCTTATTTATTTTGTTCTTGGTTGTATTTGCGGTTATAGCTGCTGGTTACGTTCTTGTAAAGGGGTTGGAAGATCCCACGAGAAGCAAGTACAAACTTTTCCTTAGTTGCTCACTTATAATCACTTCTGTTATTCCTCCTGAACTACCGATGGAACTGTCAATAGCCGTTAATACATCATTAATTGCTCTGGCACGTTGTGGAATATTTTGTACAGAGCCTTTCAGAATACCATTTGCTGGAAAGGTTGATATTTGTTGTTTTGATAAAACTGGAACGTTGACATCAGATGACATGGAGTTTCAAGGTGTAGTTGGATTGAATGATAAGGAGGATTTGGAAACTGACATGACTAGTGTGCCTTTGCGCACAGTTGAAATTCTGGCTTCTTGCCATGCATTGGTGTTTGTGGACAACAAGTTGGTGGGGGATCCTCTTGAAAAGGCTGCGCTGAAGGGAGTTGACTGGACTTACAAATCTGATGAGAAAGCCATTCCAAGAAAGGGAAGTGGCCACGCTGTTCAGATTGTTCAGAGGCACCACTTTGCTTCACATTTGAAGAGAATGGCAGTTGTTGTGCGCCTTCAAGAGGAATTTTTTGCATTTGTGAAGGGTGCTCCTGAAACAATACAAGAGAGGCTCACTGATATACCTTCATTTTATGTTGAGACGTACAAGAAATATACACGACAAGGTTCCCGTGTTCTTGCTCTTGCTTACAAATCACTTCCAGACATGATGGTTAGTGAAGCTAGAGGCCTGGATAGGGACTTGGTGGAGAGTGACCTTATATTTGCTGGTTTTGCGGTGTTCAATTGTCCAATTAGAGCGGATTCGGCTACAGTCTTATCTGAGCTTAAAGGATCATCCCATGACTTGGTAATGATTACTGGCGACCAAGCTTTAACAGCATGCCACGTAGCTAGCCAAGTTCATATTACCTCAAAGCAGATTTTAATTCTCAATTCAAAGAAGGGAACTGAGGAATATGAATGGCTCTCCCCAGATGAGTTACAGACAGTTCCCTACAGTGAGAAAGAGGTGGGGAATTTATCGGAGACATACGATCTGTGTATTGGCGGTGACTGCATCGGAATGCTACAAAGCACCTCCACTGTGCTCGATGTTATTCCATACGTTAAGGTTTTCGCTCGAGTTGCTCCAGAGCAGAAAGAACTCATATTGACCACTTTCAAAACAGTTGGAAGAATGACGTTGATGTGCGGGGATGGAACAAATGATGTTGGAGCTTTGAAGCAGGCTCATGTAGGAATTGCTCTTCTAAACGCAGTCCCCCCTCCTAAAACTGGCAACTCTCCTTCAGAAGCATCAAAAGATGACTCGGGACGGTCTGCAAAGTCGAAGAAATCTAAGCCTTCATCCGAATCATCAGGAAAAGCACTTACAAGTGGAGAAGGTTCTTCAAAAAGCAAAGTTAGTTCGAAACTGGATTCCGTTGCTGAGCAAGCGAGTAATCGTTCAAGGACGCCAGCAGAGATGCAAAGACAAAAGCTAAAGAAACTGATGGATGAGTTAAACGAAGAGGGTGATGGGCGCTCTGCCCCTATCGTCAAGCTTGGGGATGCATCCATGGCATCGCCATTCACAGCAAAGCATGCTTCTGTTGCCCCGACTACCGACATTATTCGCCAAGGTCGAAGTACTCTAGTGACAACTCTCCAGATGTTTAAAATACTCGGTCTCAACTGCCTTGCTACAGCCTATGTATTGAGTGTTATGTATTTGGATGGTGTAAAGCTTGGCGACATTCAAGCGACAATCAGTGGAGTATTCACAGCAGCCTTTTTCCTCTTCATCTCACATGCACGCCCCCTTCCAACACTTTCAGCTGAACGGCCACATCCACATATCTTCTGCTCTTATGTTCTCCTTTCCCTGCTAGGCCAATTTGCAATCCACCTCTTTTTCTTGATTTCTTCAGTTAACGAAGCCGAAAAGCACATGCCCGACGAATGCATCGAGCCAGACTCAGATTTTCATCCCAACTTGGTTAACACTGTTTCGTACATGGTAAGCATGATGCTTCAGGTAGCCACCTTTGCAGTAAACTACATGGGTCATCCTTTCAACCAGAGTGTATCCGAAAACAAACCATTCTTATACGCCCTCTTGGCTGCGGTTGGTTTCTTCACCGTCATTACCTCGGATTTGTTCCGAGACCTGAATGACTGGCTGAAACTCGTTCCATTGCCTGCGGGATTGAGGGACAAGCTTCTGTTATGGGCACTTCTTATGTTCGTGTGCTGTTACTCTTGGGAAAGACTGTTGAGATGGATGTTCCCTGGAAAAATCCCGGCATGGCGTAAGCGACAACGAGTGGTAGCGGCGAATCTGGAGAAGAAGAAACAGATCATGAAGCAAGATTCAAATATGGAGGCAGAGTCAACTCTGCCTGAATGCGAAGAGAAGGACGTAGGTAGTTCTGATGTACAGACGGACGAGGGAAATGTAGAAAATTTATCAACAGAACATGAAGGTAAGAGAAAAGAAGCTCCTACAGAACAAGTAGATGACATGAAAGAAGATGCGACTGAAGTCGGTAACACGTCTGAAGCTGGAAAGTCTAATGAAAAATGCATTGCAAAAGGGTCGCGTAAAACGAAAACTGTAAAAGTTTTGAAGGTAAAGCGAAAAATTGTAAAGAAATCCCCTGCTAGCAATGCATTGAGGACCAGAAAGGCACAGGTTGAACAGGAAGATAACAAAAAGGAAAAAGAGGTTCATGTAGCCCAAGAAGTGGGAGAAACTCCTGAAGCTCGGAATTCCAAAAAGGACGATGAGGTTTCTGTCGACCAAGAAGCGGGAGAAACTCTCGAAGCTCCGATTTCCAACAAGGAAGAAGAGGTTTCTGTAGACCAAGCAGTGGGAGAAACTCTTGAAGCTCAGAATTCCAATAAGGACAAAGAGGTTTCTGTTGCCCAAGAAGTGGGAGAAACTCTTGAAGCTCAGAATCCCACTGAAAATTCCAGCAAACCAGAGTCAAAGACGAAGAAGATTACTAAAGCTTTGAAGGTGAAAAGAAAAATCGTAAAGAAATCTCGAGCGAGCAGCCAAATGAAGACTAATAAAAATGGGAAAGGTAATGAAAAGAACGTAGAAGATACCGTGAAGCCTGACGAAAAGGAAAATGCTAATGAAAGTATCTCAAAAGCGGAGCATATCGAGAAGGGTGAAGAGACATCTGCTAGCGATAGAAACAATTCCGAGTTCAAAAGTAGCATCAAGGAACAGAACAATATTGAGAAGGTTGGCTCTTCAGATAAGAGATTAAAGAATCACAAAAGGAAAGAAAAGGATAGAGCTCAAACGAGTCGAATAGAAGATAAGAACGAAGAAAATCTCGGCGGATTGATTTTCATGTGCAGTGCGAAAACGAAGCCAGATTGTTTTCACTACAACGTAATGGGCGTTTCTGCTGGCAGAAAGGATACCGTCTTAGCAATCAAACCCGGGCTAAACCTATTCCTTTATGATTTTGATCTCAGGCTTCTGTATGGGATTTACAAGGCATCTTCTTCCGGTGGCATGAAACTCGAGCCGAAGGCTTTCAATGGAGCTTTCCCTGCTCAGGTACGATTCAATGTTTACAAGGATTGTTTTCCACTACCTGAGAGCATTTTCAAGAATGCCATCCAAGAGAATTATTTTGAGAAGCACAAGTTCAAAGTTGAACTCTCTGTTAAACAGGTTCGGAAGCTCTCAGCTCTTTTCCGTCCAGTAGGACTCCTCTCGAGTTCGGTTACTATTGGGTTCCTTCCAAAGGTGCCAATTAGGGATAGGAAAGTTCGTAGGAAAGTCGAAGACACTTGGGTTAGGAATTCTAAGTCCAAGGGTGATGCCAGGAATGATCAATCGTCATCTCATGGACGGGACCGACACCGAGAGGAGGCACCTAGACATAGAGAGGAAGTTCCTCGCGAATTGTACGTAAGCGAAAAGGACTATCGAACTTATGGTCTTCAGGTAGAAAGAAGAAATTTAGATCCTGTGCCTTTGCCACGGCCTTATTTAGAAACATACCACAGAGATCATGATAGGGACTATCAACTAAGACATCTAGAGCAGCCACAGAGAGAAGTGGTTCGATCGGATCACGTACACTTTAACGGAAAAGATTATCCAGTTTACAGTATTGATTCTAGATCTCAAATATCACGGGCAATATCTGGTAGCGGTTCGGAACGACCTGCCTATGATCCAATTTACACTCATCAATATGGCCTTTCATCGATCGTCCCGTATCTGGTTCCATCAAGGAGAGATGAAGCTGCTGCTCCAACGTATTCAAGAAGTTACGTCGCTGATACTGAGCCCATGCGTCATGCTGCTCATGCTCTACCGTATTACAATCAGGTTCGGGTTGAGTTTCACTTGCAGACGTCTCGAGTTCCATATGTAGCACAGGGACTTTAA 5628 43.35 MLRFHVGGKVVERVDLLRKKHWTWRLDLWPFAILYVAWLAVVVPSIDFGDALIVLGGLVALHVLVLLFTGWSVDFKCFVQYSKVFFYNHYSFSINFVLAFDDSYELPLHLRRWLIIWFSAVNNIYHADTCKIVPAKFSGSKEIVSLHFRKLLAGSESAMDIEEIYFDFRKQRFIYSKEKETFCKLPYPTKETFGYYLKSTGYGSEPKVVAAVDKWGRNILFTLFMLFMFESTMAKSRLKTLSELRRVRVDTQTLMVHRCGKWVKLPGTELLPGDVVSIGRNSGQSGEDKSVPADMLILAGSAIVNEAILTGESTPQWKVSVSGRGIEEKLSAKRDKSHMLFGGTKILQHTPDKTFPLRTPDGGCLAVVLRTGFETSQGKLMRTILFSTERVTANSWESGLFILFLVVFAVIAAGYVLVKGLEDPTRSKYKLFLSCSLIITSVIPPELPMELSIAVNTSLIALARCGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFQGVVGLNDKEDLETDMTSVPLRTVEILASCHALVFVDNKLVGDPLEKAALKGVDWTYKSDEKAIPRKGSGHAVQIVQRHHFASHLKRMAVVVRLQEEFFAFVKGAPETIQERLTDIPSFYVETYKKYTRQGSRVLALAYKSLPDMMVSEARGLDRDLVESDLIFAGFAVFNCPIRADSATVLSELKGSSHDLVMITGDQALTACHVASQVHITSKQILILNSKKGTEEYEWLSPDELQTVPYSEKEVGNLSETYDLCIGGDCIGMLQSTSTVLDVIPYVKVFARVAPEQKELILTTFKTVGRMTLMCGDGTNDVGALKQAHVGIALLNAVPPPKTGNSPSEASKDDSGRSAKSKKSKPSSESSGKALTSGEGSSKSKVSSKLDSVAEQASNRSRTPAEMQRQKLKKLMDELNEEGDGRSAPIVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDIQATISGVFTAAFFLFISHARPLPTLSAERPHPHIFCSYVLLSLLGQFAIHLFFLISSVNEAEKHMPDECIEPDSDFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSVSENKPFLYALLAAVGFFTVITSDLFRDLNDWLKLVPLPAGLRDKLLLWALLMFVCCYSWERLLRWMFPGKIPAWRKRQRVVAANLEKKKQIMKQDSNMEAESTLPECEEKDVGSSDVQTDEGNVENLSTEHEGKRKEAPTEQVDDMKEDATEVGNTSEAGKSNEKCIAKGSRKTKTVKVLKVKRKIVKKSPASNALRTRKAQVEQEDNKKEKEVHVAQEVGETPEARNSKKDDEVSVDQEAGETLEAPISNKEEEVSVDQAVGETLEAQNSNKDKEVSVAQEVGETLEAQNPTENSSKPESKTKKITKALKVKRKIVKKSRASSQMKTNKNGKGNEKNVEDTVKPDEKENANESISKAEHIEKGEETSASDRNNSEFKSSIKEQNNIEKVGSSDKRLKNHKRKEKDRAQTSRIEDKNEENLGGLIFMCSAKTKPDCFHYNVMGVSAGRKDTVLAIKPGLNLFLYDFDLRLLYGIYKASSSGGMKLEPKAFNGAFPAQVRFNVYKDCFPLPESIFKNAIQENYFEKHKFKVELSVKQVRKLSALFRPVGLLSSSVTIGFLPKVPIRDRKVRRKVEDTWVRNSKSKGDARNDQSSSHGRDRHREEAPRHREEVPRELYVSEKDYRTYGLQVERRNLDPVPLPRPYLETYHRDHDRDYQLRHLEQPQREVVRSDHVHFNGKDYPVYSIDSRSQISRAISGSGSERPAYDPIYTHQYGLSSIVPYLVPSRRDEAAAPTYSRSYVADTEPMRHAAHALPYYNQVRVEFHLQTSRVPYVAQGL 1875
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10123236 10143546 - CmoCh12G011100.1 Cmo12g01110 393798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01110 1875 TIGRFAM P-ATPase-V: P-type ATPase of unknown pump specificity (type V) 220 1146 IPR006544 GO:0006812|GO:0016021|GO:0019829|GO:0140358
Cmo12g01110 1875 SUPERFAMILY Calcium ATPase, transmembrane domain M 240 1166 IPR023298 -
Cmo12g01110 1875 MobiDBLite consensus disorder prediction 1405 1419 - -
Cmo12g01110 1875 PANTHER CATION-TRANSPORTING ATPASE-RELATED 220 1183 - -
Cmo12g01110 1875 MobiDBLite consensus disorder prediction 844 858 - -
Cmo12g01110 1875 MobiDBLite consensus disorder prediction 1431 1476 - -
Cmo12g01110 1875 SUPERFAMILY HAD-like 480 831 IPR036412 -
Cmo12g01110 1875 Pfam Development and cell death domain 1520 1642 IPR013989 -
Cmo12g01110 1875 MobiDBLite consensus disorder prediction 1486 1512 - -
Cmo12g01110 1875 ProSitePatterns E1-E2 ATPases phosphorylation site. 487 493 IPR018303 -
Cmo12g01110 1875 Pfam haloacid dehalogenase-like hydrolase 482 710 - -
Cmo12g01110 1875 PANTHER CATION-TRANSPORTING ATPASE-RELATED 116 219 - -
Cmo12g01110 1875 PANTHER CATION-TRANSPORTING ATPASE-RELATED 1 84 - -
Cmo12g01110 1875 Pfam E1-E2 ATPase 253 464 - -
Cmo12g01110 1875 PANTHER CATION-TRANSPORTING ATPASE 116 219 - -
Cmo12g01110 1875 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 400 512 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo12g01110 1875 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 771 825 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo12g01110 1875 Coils Coil 893 913 - -
Cmo12g01110 1875 MobiDBLite consensus disorder prediction 1298 1336 - -
Cmo12g01110 1875 MobiDBLite consensus disorder prediction 827 901 - -
Cmo12g01110 1875 PRINTS P-type cation-transporting ATPase superfamily signature 687 697 - -
Cmo12g01110 1875 PRINTS P-type cation-transporting ATPase superfamily signature 305 319 - -
Cmo12g01110 1875 PRINTS P-type cation-transporting ATPase superfamily signature 485 499 - -
Cmo12g01110 1875 PRINTS P-type cation-transporting ATPase superfamily signature 806 825 - -
Cmo12g01110 1875 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 491 675 IPR023299 GO:0000166
Cmo12g01110 1875 ProSitePatterns Hypothetical cof family signature 2. 806 828 - -
Cmo12g01110 1875 SUPERFAMILY Calcium ATPase, transduction domain A 253 384 IPR008250 -
Cmo12g01110 1875 MobiDBLite consensus disorder prediction 1223 1252 - -
Cmo12g01110 1875 Gene3D - 225 385 - -
Cmo12g01110 1875 PANTHER CATION-TRANSPORTING ATPASE 220 1183 - -
Cmo12g01110 1875 PANTHER CATION-TRANSPORTING ATPASE 1 84 - -
Cmo12g01110 1875 SFLD p-type atpase 466 952 IPR044492 -
Cmo12g01110 1875 ProSiteProfiles DCD domain profile. 1517 1644 IPR013989 -
Cmo12g01110 1875 SMART dcd 1517 1644 IPR013989 -
Cmo12g01110 1875 MobiDBLite consensus disorder prediction 1361 1375 - -
Cmo12g01110 1875 Gene3D - 483 665 IPR023299 GO:0000166
Cmo12g01110 1875 SFLD Haloacid Dehalogenase 466 952 - -
Cmo12g01110 1875 MobiDBLite consensus disorder prediction 1286 1512 - -
Cmo12g01110 1875 CDD P-type_ATPase_cation 220 1104 - -
Cmo12g01110 1875 MobiDBLite consensus disorder prediction 1673 1712 - -
Cmo12g01110 1875 Gene3D - 666 831 IPR023214 -
Cmo12g01110 1875 MobiDBLite consensus disorder prediction 1190 1262 - -
Cmo12g01110 1875 MobiDBLite consensus disorder prediction 859 896 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g01189 Cmo12g01110 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01711 Cmo-Chr6:11777724 Cmo12g01110 Cmo-Chr12:10123236 1.62E-25 dispersed
Cmo12g01110 Cmo-Chr12:10123236 Cmo01g01844 Cmo-Chr1:13443728 4.70E-17 dispersed
Cmo16g00586 Cmo-Chr16:2836960 Cmo12g01110 Cmo-Chr12:10123236 2.07E-18 dispersed
Cmo05g01191 Cmo-Chr5:9333496 Cmo12g01110 Cmo-Chr12:10123236 0 transposed
Cmo12g01110 Cmo-Chr12:10123236 Cmo05g01189 Cmo-Chr5:9321986 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01110 K14950 - csv:101215828 2080.83