Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01115 ATGGTTGCTCAAAGGAAGGGAGCATCGCGGGTTTCCGAGGACCCCGAGGAGCTGGCTAGAGTTTCGTTGCAGGCTGTTCTTCTTGCTGATAGCTTTACCACTAAGTTTCATCCCATAACGCTTGAACGCCCAAAGGTAGTTTCCAAACAGTCTCAGGATGTACATTTCTTACGTAGTTTGATATTAGTTTGGAAATGTACAACCATTCATTCGAGGGCTGGTAATAATAACAAGTCCTGTGCAATTCAACTATCTATTTACTTACTGCACAAGTTTTTGTATGCGAATTCGTTACAACGTAAACTTAGAAGCTTAGCTGTGAGAACTTTTGGGGTGTTTTCTGTGCCAATTATCTATACCATTGTCCCGTTTCATTTTTCACAAGCAATCTGCAGCAAGCAGGTATTATTGCCGTTGGTAAATGTCCCGATGATCAACTATACTTTATCTTGGCTCGAATCGGCTGGTGTCGAGGAGGTGTTTGTATTTTGCTGTGCTAATTCGAAGCAAGTAATTGATTATTTGGAGAACTCTGAGTGGGTATCCCTACCAGACTTTGCAGTCACAACTATAGAGTCGCACAACTCTGTTAGTGCTGGAGATGCTTTGCGTTTGATCTATGAAAGAAATGTGATACATGGTGATTTTGTTCTTATCACTGGAGACACAATAAGCAACATGTCACTTAGGCGAGCTCTTCAAGAGCACAAGGAAAGAAAGAAGAAAGATAGTAATGCTGTAATGACTATGGTTGTCAAACGGTCAAAGCCTTCTCCTATCACACACCAATCTCGGCTTGGCACTGATGAGCTATTTATGGCAATTGATCCTAATACTAAGCAGCTTGTGTACTATGAGGATAAGGCTGACAATTCAAAAGGAATTATACATCTTGACAAGTCACTGCTAATGGATAATCCTTCCATGTCACTTCGTAACGATATGCAGGATTGTTACATAGACATATGCTCCCCAGAAGTACTCAGTCTGTTTACTGACAATTTTGATTACCAACATCTTCGTCGTCATTTTGTCAAGGGTTTGCTCTTAGACGATATCATGGGTTACAAGATTTACACACATGAAATTTGCTCAAGCTATGCAGCTAGAATTGATAATTATCGAAGCTATGACACCGTTAGTAAGGACATAATACAGAGGTGGACATATCCACTAGTACCAGATGTTAAATTCTTTGGGAATTCTGCTTACAAACTTGAAAGGCAGGGAATGTATAGAGCATCAGAAATATTGCAGGCACGTTCTGCACAGGTTGGTCCGTTTACTGTTATTGGAGATAACAGCAAAATTGGTGGCAACACCAAAATTACAAATTCAATTATTGGGCAAGGTTGTAGTATTGGATCAAATGTTACAATTGAAGGCTCTTATATATGGGACAACGTCACCATTGAAGATGGCTGTAAACTTAGTCATGCTATCGTCTGTGATGGAGTTATTATAAAATCAGGAGCAGAACTGGAACCTGGTGTAATTTTGTCTTTCAAGGTTATTGTCGGGGATCAGTTTGTTGTTCCATCATATTCAAAGGTATCTTTGTTTCAGCAGCCGACCAATCAAGATAGCGATGAGGAGCTGGAATATGCAGACAATAGCAGTGGCATTGTAGAATGTACCACGGACAAGTCAAGTAGTGAACAGTCCAAATCGCTGGAAATGCAAGGCTGGCCTGCATCTGAGGTGATTACAGGGTCATGTTTTAAAGAGAGGACATCGAAAGCCATCTTTAGGGGGTCATGTTTTAAAGAGAAGATGAAGGTGGATTTTGTTGTTAAGGCTGTAACTCGAAGATGTGCCTTCGACTCTGACATTCTCAACTATTATTCTCAGCTAGGTAATGGAGGTATAGGATATGTTTGGTCAATTTGTGAAGGAAGTGTTGAAGAAGAATGGAGGCACTCAGTTGCACCCATTCCTTCCAATAAATTTGAGAAGGCTCTGCAAGCGGCAGATGATGAGTTGGAGTTAACTCAAGATTCGAATGTTCTACCAACTTCAGGGGAGTTAAAGTCCGACTCAAATTTCTCAGATGGTGATGACAACGAAGACTCTAGAGATGACTCCATCCACTTTGAGAAAGAGGTCGAAGCAACGTTTCTGAGGGCTGTGCATGAAAACATTAAAGTAGACAATGTAATTTTGGAAGTGAATTCATTGCGGTATGCTTTCATCTTATCTGCTTTGATGTCACTGCTGTTGGAGTTATTTTTTCAATCTCATTTTTTACTGAAAAGTGTTCTAAAACCTCCAATGGCCCGTTCTGGACCTCTAGATTTAGACATTTTGTTGAAAGCCTACATATGCAAGATATTTGCAAGGTTGTCATATAATAAGGTGGCTGCAGATTGTGCAGGAGCAATATTTTATTCATTGATGAAATTTGCCTATGATTCTCCACATGGTTCATCTAGTGAATTACTGCAAAATACTACCAATATAATTACGAAATGGAAAAAGCTTTTGAAGTACTACCTTGCTGACATGGATGAAGAGATTGAAGTGATATTAAAATTCGAAGAGATGTGCTTGGAATCTGCCAAGGAATTTACTCCACATTTTACCAAGATCTTATGTCATCTATATGACCAAGAAATCATTCAAGAAGATGCTATTCTGAGGTGGGACGATGAGAAAAAAGAAGCAGATGATTCGGATAAACTCTTCGTCAAGCAGGCAGAGAAATTCATTGAATGGTTAAGAGTTGCATCAGAAGAGGAGGAAGAAGAGGAAGAAGAGGAAGAAGAGGAAGAATAG 2775 39.82 MVAQRKGASRVSEDPEELARVSLQAVLLADSFTTKFHPITLERPKVVSKQSQDVHFLRSLILVWKCTTIHSRAGNNNKSCAIQLSIYLLHKFLYANSLQRKLRSLAVRTFGVFSVPIIYTIVPFHFSQAICSKQVLLPLVNVPMINYTLSWLESAGVEEVFVFCCANSKQVIDYLENSEWVSLPDFAVTTIESHNSVSAGDALRLIYERNVIHGDFVLITGDTISNMSLRRALQEHKERKKKDSNAVMTMVVKRSKPSPITHQSRLGTDELFMAIDPNTKQLVYYEDKADNSKGIIHLDKSLLMDNPSMSLRNDMQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIYTHEICSSYAARIDNYRSYDTVSKDIIQRWTYPLVPDVKFFGNSAYKLERQGMYRASEILQARSAQVGPFTVIGDNSKIGGNTKITNSIIGQGCSIGSNVTIEGSYIWDNVTIEDGCKLSHAIVCDGVIIKSGAELEPGVILSFKVIVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVECTTDKSSSEQSKSLEMQGWPASEVITGSCFKERTSKAIFRGSCFKEKMKVDFVVKAVTRRCAFDSDILNYYSQLGNGGIGYVWSICEGSVEEEWRHSVAPIPSNKFEKALQAADDELELTQDSNVLPTSGELKSDSNFSDGDDNEDSRDDSIHFEKEVEATFLRAVHENIKVDNVILEVNSLRYAFILSALMSLLLELFFQSHFLLKSVLKPPMARSGPLDLDILLKAYICKIFARLSYNKVAADCAGAIFYSLMKFAYDSPHGSSSELLQNTTNIITKWKKLLKYYLADMDEEIEVILKFEEMCLESAKEFTPHFTKILCHLYDQEIIQEDAILRWDDEKKEADDSDKLFVKQAEKFIEWLRVASEEEEEEEEEEEEEE 924
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10188749 10199697 + CmoCh12G011150.1 Cmo12g01115 393803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01115 924 Coils Coil 903 924 - -
Cmo12g01115 924 MobiDBLite consensus disorder prediction 670 693 - -
Cmo12g01115 924 Pfam Nucleotidyl transferase 132 257 IPR005835 GO:0009058|GO:0016779
Cmo12g01115 924 SMART 542_3 825 912 IPR003307 GO:0005515
Cmo12g01115 924 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 10 46 - -
Cmo12g01115 924 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 780 917 - -
Cmo12g01115 924 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 93 731 - -
Cmo12g01115 924 Gene3D - 768 921 - -
Cmo12g01115 924 Pfam eIF4-gamma/eIF5/eIF2-epsilon 837 916 IPR003307 GO:0005515
Cmo12g01115 924 ProSiteProfiles W2 domain profile. 692 916 IPR003307 GO:0005515
Cmo12g01115 924 CDD LbH_eIF2B_epsilon 430 508 - -
Cmo12g01115 924 SUPERFAMILY Trimeric LpxA-like enzymes 356 518 IPR011004 -
Cmo12g01115 924 CDD W2_eIF2B_epsilon 693 910 IPR044123 GO:0005085|GO:0031369
Cmo12g01115 924 Gene3D Hexapeptide repeat proteins 401 523 - -
Cmo12g01115 924 SUPERFAMILY ARM repeat 780 907 IPR016024 -
Cmo12g01115 924 CDD eIF-2B_epsilon_N 23 328 IPR035543 -
Cmo12g01115 924 Gene3D - 685 754 - -
Cmo12g01115 924 SUPERFAMILY Nucleotide-diphospho-sugar transferases 135 458 IPR029044 -
Cmo12g01115 924 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 127 392 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g01045 Cmo-Chr10:5504877 Cmo12g01115 Cmo-Chr12:10188749 1.12E-20 dispersed
Cmo12g01115 Cmo-Chr12:10188749 Cmo11g00806 Cmo-Chr11:3985363 1.05E-15 dispersed
Cmo12g01115 Cmo-Chr12:10188749 Cmo05g01199 Cmo-Chr5:9386380 2.15E-17 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01115 K03240 - csv:101217025 1160.59