Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01126 ATGGATGGTTTCTCAGATCTTGAGCCCGATTGCTCTGAATTCGTTGAAATTGATCCCACTGGCCGATATGGCAGATATAATGAAATTTTAGGAAAAGGGGCTTCAAAAACAGTTTACAGAGCTTTTGATGAGTATAATGGAATTGAAGTAGCTTGGAATCAAGTGAAACTCTATGATTTCTTGCAGAGTCCTGAAGATCTGGAACGACTTTACTGTGAGATTCATCTCTTGAAGACATTGAAACATAGAAATATCATGAAATTCTACACTTCTTGGGTTGATATTGCTAATAGAAACATCAATTTTGTTACTGAAATGTTCACTTCTGGTACTCTTAGACAGTATAGATTGAAGCATAAACGAGTTAATATTAGAGCTGTGAAGCATTGGTGTAGGCAGATTCTGAAGGGGCTTCATTATTTGCATAGCCATGAGCCTCCTATTATCCATAGAGATCTCAAGTGTGATAATATCTTTGTTAATGGTAATCAAGGGGAGGTTAAGATTGGTGATCTTGGACTTGCTGCTATTCTTAGGAAATCTCATGCTGATCATTGTGTAGGAACACCAGAGTTTATGGCTCCAGAAGTGTATGCAGAAGCATATAACGAATTAGTCGATATTTACTCATTCGGGATGTGCGTTCTCGAGATGATAACGTTTGAATATCCATACAGCGAATGCACTCATCCTGCTCAGATCTACAAGAAAGTCGTATCCGGGAAAAAACCAGATGCCTTGTACAAAGTGAAGGATCCCGAAGTGCGACAGTTCATCGATAAGTGTTTAGCATCGGTTTCATTTCGACTCTCGGCAGCAGAGCTTTTGAATGATCCTTTTCTTCAAGTTGATAATGGCGAATATGATCTTAGACCTGTCGATTACGGGAGAGGATTCGACGATGTATGCCCTCTTATAAGACGTGACAGCTCCTTTTGTAACGGATATCCATATGATTATAGTTTCGAAGCTTCGAGTGAATCGGGTTACCATCCGATTGATCACGAAACCAATGGAATCGAGCTTTTCGAGTATTATGAAGGTGAACATTCTGAAGATGTTGATATTAGCATTAAAGGGAAGATGAGAGAAGATGGTAGCATCTTCTTAAGACTCAGAATTACTGATAAAGAAGGACTTATTAGGAACATTTACTTTCCGTTCGATGTCGAGACGGATACAGCATTAAGCGTTGCAACAGAAATGGTAGCGGAGCTAGATATTACAGATCAAGACGTGACGAGAATTGCTGATATGATCGACGGAGAAATCGCTTCCTTGGTACCCGAATGGAGACCAGGTCCGGGAATTGAGGAAACGCCTCGTTTTGCTTGTCATAATTGTGCTACTACTTCTTACAACAATGCTTCATCAAATGGTCTTTCATTGAGGAATCCTGGCGGAAAAAACTCGGACGTAGCTCAATGTTGTGGACATCGATATGCTTCGATACACGGTCGTTTCGAGGAGATAATGTATCAAGCTGACGAATCCGAGCATCATCCAGTAGAGGGTGCACCGAATATATCAAGCTTGAATTATCCTGAAATATGGGGTCGTCACGAAAGCCGTGAACTTAGCTCAATGAGCTCACGACATAGCCACTCGGATGAAGATTACGAGAAAACAGATCGACCAAGTACAGTCACGGATACTAAAGAAACGATTGTGGAAAGTAAAACCGTTCCTAAGACGGGAACGTCGCTTAGGGACCTGATGAATTCCCTTTCTTTCTCGGAAACGCCTTCGTTATATGAACCTCGAGATATTGACGAAAATGATGCCCAGCAAGAACTGAGATGGATTAAGGCAAAGTACCAAATGGAATTAAACAAGCTCAAAGAACAAAAAATGGAGAATGGGACACTGGTAGGCCACGACCAAACCCTCGACAGGTCCGATCGAGATACGAACCGAAATAGTACCGAGAGCCGTGTTTATATCAGTAATAGCTGTTACGGTTCAGACGCTCGGAAGGTCGTGGAATCGCCTGTCGTGGAGAAGGTTGTCACGGCTAAAAATGCCTGTAATGGTTCATTGCTTCCAAGTTCTCTTCATAGAGCAATATCTCTACCAGTTGATGCTGTTCATATGTAA 2097 41.54 MDGFSDLEPDCSEFVEIDPTGRYGRYNEILGKGASKTVYRAFDEYNGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDIANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILKGLHYLHSHEPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHADHCVGTPEFMAPEVYAEAYNELVDIYSFGMCVLEMITFEYPYSECTHPAQIYKKVVSGKKPDALYKVKDPEVRQFIDKCLASVSFRLSAAELLNDPFLQVDNGEYDLRPVDYGRGFDDVCPLIRRDSSFCNGYPYDYSFEASSESGYHPIDHETNGIELFEYYEGEHSEDVDISIKGKMREDGSIFLRLRITDKEGLIRNIYFPFDVETDTALSVATEMVAELDITDQDVTRIADMIDGEIASLVPEWRPGPGIEETPRFACHNCATTSYNNASSNGLSLRNPGGKNSDVAQCCGHRYASIHGRFEEIMYQADESEHHPVEGAPNISSLNYPEIWGRHESRELSSMSSRHSHSDEDYEKTDRPSTVTDTKETIVESKTVPKTGTSLRDLMNSLSFSETPSLYEPRDIDENDAQQELRWIKAKYQMELNKLKEQKMENGTLVGHDQTLDRSDRDTNRNSTESRVYISNSCYGSDARKVVESPVVEKVVTAKNACNGSLLPSSLHRAISLPVDAVHM 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10272669 10276890 - CmoCh12G011260.1 Cmo12g01126 393814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01126 698 MobiDBLite consensus disorder prediction 525 554 - -
Cmo12g01126 698 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 669 - -
Cmo12g01126 698 CDD STKc_WNK 22 281 - -
Cmo12g01126 698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Cmo12g01126 698 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01126 698 Coils Coil 596 616 - -
Cmo12g01126 698 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01126 698 Gene3D Transferase(Phosphotransferase) domain 1 107 287 - -
Cmo12g01126 698 Gene3D Phosphorylase Kinase; domain 1 9 105 - -
Cmo12g01126 698 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 1 669 - -
Cmo12g01126 698 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01126 698 MobiDBLite consensus disorder prediction 525 551 - -
Cmo12g01126 698 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Cmo12g01126 698 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 369 423 IPR024678 GO:0004674|GO:0005524
Cmo12g01126 698 Gene3D - 366 431 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g01209 Cmo12g01126 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01121 Cmo-Chr8:7145129 Cmo12g01126 Cmo-Chr12:10272669 0 dispersed
Cmo12g01126 Cmo-Chr12:10272669 Cmo17g00224 Cmo-Chr17:1320289 0 dispersed
Cmo11g01026 Cmo-Chr11:5621327 Cmo12g01126 Cmo-Chr12:10272669 0 transposed
Cmo12g01126 Cmo-Chr12:10272669 Cmo05g01209 Cmo-Chr5:9473841 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74741 PF00069 Pkinase 1.10E-49 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01126 K08867 - csv:101219552 1192.56