Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01150 ATGAATGCCAATACCCATGTGATGTTTTCTCTTTTCTTCCTCTTCCTTGCCCTCTTCACCCCTGTTTATTCCTCTCCTCTTCTTGCTTCCGATCCGCCTTTGTTGTTGCGCTGTGGTTCAAATGAAGAATCTACCGATGATGTTGGCCGAAAATGGACTCCCGATTCCAAATTCCTCCCCTCCAAGAATACCCAAACGGCGTCGGCGGGGTTTCAAGATCCGTCCATGACATCGCAGGTTCCATATATGGAGGCTAGGATCTTCACTTCTGCGACGGCGTATAAATTTCCGATCAAACCTGGTAATCGCTATTGGCTTCGACTTCATTTCTATCCTTCCACTTATGGCATTCATGATTCTGCGAATTCCTTTTTCACCATCGCCGCGAATGATTTGTCCCTTGCGAAGAATTTTAGTGTTCATCTCACCTGTCAGGCCTTAACTCAGGCCTACATTATCCGCGAATTTACTCTCGCGGCTTCCGCATCTGAAACCCTAAATTTGACCTTCACCCCTGTTACTGGATTTGCTTTTGTGAATGGGATTGAATTGGTTCAAATGCCGGAGATCTTTGGGGAAGCAGTGATGATTGGTGCAGGGCGGCAAACTACGGACGTTACGAAGATGAGTATGCAGACAATAGCGAGATTGAACGTCGGTGGGAGCTACATTTCTCCGGTGAACGACTCGGGTTTGACAAGAACATGGTATGATGATTTTCCTTATCTTTATGGTGCTGCAGAGGGTGTGGCGGTAGAAGCTGCGAAGAGGTTGGTGATTAACTATAAAGATATGCCGAGTTATATAGCACCTGAGGAAGTTTACAGGTCGTTGAGATCAATGGGGACAGAAGCGAGTGTGAATGGGAATTACAATTTGACATGGCTGTTTCCTAATATTGATCCAGGATTCATGTATCTAATGAGATTGCATTTCTGTGATCTGACATTGAGTAGGGCAAATCAGGTGGTGTTTGATGTGTTCATCAACAACCAAACGGCGGACACGAGGGGGATCGATGTGATAGCTTGGTCGGGGGGGCGGGGGGTGCCAAAATACAGGGATTATGTAGTGTTTTCGCCAGAAGCAGCAACATTGCAGGAGATATGGCTGGCATTGCATCCGAAATATTCGGAGTCGCCGGAGTTTGCGGATGCAATGTTGAATGGGCTAGAGATATTCAAGCTGGAATCTGGGAAGAACTTGGCAGGGATGAATCCTCAAACGTCGGCATTTAGGATGAAGCTTGAGGGGCAAGGAGACAGAAAGTTTGAAGCAAAGAGCAACAATGTTGAAGTGATTGGAGGGGCTGCAGGGGGGGCTGCAGCATTTGTTGTGGTGGCACTTTGCTTTGCAGTGTACCAAAGGAAGAACAGAATGCCAGGGAGTGATTCACATACAGCTAGCTGGTTACCGATCTATGGGAATTCGCATTCGAGTGGGAGCAAATCAACCGTGTCTGGGAAGAGTATGGCGAGTAATTTGGCACAAGGTTTGGCGCGGCATTTTTCGCTTGCAGAGATTTTAAATGCTACGAAAAACTTTAGTGAGTCTAACGTGATTGGGGTTGGAGGATTCGGGAAGGTGTATAAGGGAGTGATCGATGGAGGAACGAAAGTTGCTATTAAAAGGTCGAACCCGCAGTCGGAACAAGGAGTTCACGAATTCCTTACAGAAATAGATTTGCTTTCGAAGCTGAGACACAAACATTTGGTCTCCTTGATTGGTTTTTGTGATGAAGAGAATGAGATGTGTTTGATTTATGATTACATGGGTTTGGGAACTCTGAGGGAGCATCTGTATAAGACCAATAATAATAAAACTCGTCTCTCATGGAAGAAAAGGCTGGAGATTTGCATTGGAGCAGCTAGAGGACTTCACTACCTTCACACGGGAGCACAGTACACCATCATTCATAGAGATGTCAAAACTACCAACATTCTCTTGGATGAAAACTGGGTTGCAAAGGTTTCCGATTTTGGTCTCTCGAAAACGGGTCCGAACATGGCTAACGGTGGTCATGTTAGCACCGTCGTTAAGGGTAGCTTTGGCTACTTAGATCCAGAGTACTTCAGAAGGCAACAACTCACTGAGAAATCTGATGTCTATTCTTTTGGAGTTGTTCTGTTTGAAGTGTTGTGTGCAAGGCCTGCTTTAAACCCAAGCCTCCCCAAGGAACAGGTTAGTCTTGCGGATTGGGCGTTGCACTGCAAACGCAAAGGAGTTCTTGACGATCTCATTGATCCCTACCTCAAAGGCAAAATCACCCCTGATAGCTTGAAGAAGTTTGCTGATGCAGCTGAGAAATGCCTCGACGACCATGGAGCCGAGCGTCCTTCTATGGGTGATGTCTTGTGGAACCTTGAATTTGCTCTCCAACTACAAGAAAGTGCCGATGGTGGTGGCTCGAGTCACAGATCGAGAATAAACAGCAGCAGCAACAACAACAACGACGACGACATAGATAACCACAGAAACCAAGACATGACTGCTCATTACAACAACCTCAGCCTTGGAAGTGAACAAGATTTACTTCAACAAACTGATGAACAAGAGAGTACTGAAATCTTCTCCCAACTTGTCCATCCCTCAGGTCGGTAA 2601 46.06 MNANTHVMFSLFFLFLALFTPVYSSPLLASDPPLLLRCGSNEESTDDVGRKWTPDSKFLPSKNTQTASAGFQDPSMTSQVPYMEARIFTSATAYKFPIKPGNRYWLRLHFYPSTYGIHDSANSFFTIAANDLSLAKNFSVHLTCQALTQAYIIREFTLAASASETLNLTFTPVTGFAFVNGIELVQMPEIFGEAVMIGAGRQTTDVTKMSMQTIARLNVGGSYISPVNDSGLTRTWYDDFPYLYGAAEGVAVEAAKRLVINYKDMPSYIAPEEVYRSLRSMGTEASVNGNYNLTWLFPNIDPGFMYLMRLHFCDLTLSRANQVVFDVFINNQTADTRGIDVIAWSGGRGVPKYRDYVVFSPEAATLQEIWLALHPKYSESPEFADAMLNGLEIFKLESGKNLAGMNPQTSAFRMKLEGQGDRKFEAKSNNVEVIGGAAGGAAAFVVVALCFAVYQRKNRMPGSDSHTASWLPIYGNSHSSGSKSTVSGKSMASNLAQGLARHFSLAEILNATKNFSESNVIGVGGFGKVYKGVIDGGTKVAIKRSNPQSEQGVHEFLTEIDLLSKLRHKHLVSLIGFCDEENEMCLIYDYMGLGTLREHLYKTNNNKTRLSWKKRLEICIGAARGLHYLHTGAQYTIIHRDVKTTNILLDENWVAKVSDFGLSKTGPNMANGGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPALNPSLPKEQVSLADWALHCKRKGVLDDLIDPYLKGKITPDSLKKFADAAEKCLDDHGAERPSMGDVLWNLEFALQLQESADGGGSSHRSRINSSSNNNNDDDIDNHRNQDMTAHYNNLSLGSEQDLLQQTDEQESTEIFSQLVHPSGR 866
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10427951 10430551 + CmoCh12G011500.1 Cmo12g01150 393838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01150 866 Pfam Malectin-like domain 38 395 IPR024788 -
Cmo12g01150 866 SUPERFAMILY Protein kinase-like (PK-like) 501 786 IPR011009 -
Cmo12g01150 866 MobiDBLite consensus disorder prediction 797 817 - -
Cmo12g01150 866 MobiDBLite consensus disorder prediction 797 826 - -
Cmo12g01150 866 PANTHER OS07G0166700 PROTEIN 28 828 IPR045272 GO:0004714|GO:0006468
Cmo12g01150 866 PANTHER RECEPTOR-LIKE PROTEIN KINASE ANXUR2 28 828 - -
Cmo12g01150 866 ProSitePatterns Protein kinases ATP-binding region signature. 521 543 IPR017441 GO:0005524
Cmo12g01150 866 ProSiteProfiles Protein kinase domain profile. 515 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01150 866 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Cmo12g01150 866 SMART serkin_6 515 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01150 866 Gene3D - 34 188 - -
Cmo12g01150 866 Gene3D - 209 396 - -
Cmo12g01150 866 Gene3D Phosphorylase Kinase; domain 1 476 590 - -
Cmo12g01150 866 Gene3D Transferase(Phosphotransferase) domain 1 591 812 - -
Cmo12g01150 866 Pfam Protein tyrosine and serine/threonine kinase 518 734 IPR001245 GO:0004672|GO:0006468
Cmo12g01150 866 CDD STKc_IRAK 521 789 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00298 Cmo-Chr3:4189461 Cmo12g01150 Cmo-Chr12:10427951 0 dispersed
Cmo07g01258 Cmo-Chr7:6881896 Cmo12g01150 Cmo-Chr12:10427951 0 dispersed
Cmo12g01150 Cmo-Chr12:10427951 Cmo01g01242 Cmo-Chr1:9971509 0 dispersed
Cmo12g01150 Cmo-Chr12:10427951 Cmo05g01235 Cmo-Chr5:9634231 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74743 PF12819 Malectin_like 1.40E-36 CL0202 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01150 - - cmax:111465432 1607.81