Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01162 ATGCAGGGTACACCAGTTAACATTATTGTAGGTTCTCATGTCTGGATTGAGGATCCAGAAGTTGCTTGGCTTGATGGATTGGTATCCAAGATTACAGGGCAGGAAGCCGAGATCGAAGCCAGCAATGGAAAAAAAGTTGTTGCAAAATTATCCAAAATATATCCAAAAGATATGGAGGCTCCCGCTGGTGGCGTCGATGATATGACGAAGTTATCTTACCTGCACGAGCCGGGAGTTCTACAAAATTTAAAAAGTCGATATGAACTCAACGAAATATATACATACACTGGCAATATTCTTATTGCAATTAATCCATTCCAAAGATTGCCTCATCTTTATGATGGTCACATGATGCATCAATACAAAGGGGCACCATTTGGAGAGCTGAGTCCTCATGTTTTTGCTGTTGCTGATGTTGCTTACAGGGCAATGGTTATTGAGGGTAAAAGTAATTCAATTCTGGTCAGTGGTGAAAGTGGAGCAGGGAAAACTGAAACCACAAAGATGCTTATGCGGTACCTTGCGTTTTTAGGTGGTCGGGCGGCCACTGAAGGACGAACAGTTGAGCAACAAGTTCTTGAGTCAAATCCAGTGCTTGAAGCTTTTGGAAATGCTAAAACTGTCAGAAATAACAATTCCAGTCGCTTTGGTAAGTTTGTTGAAATCCAGTTTGACAAGCATGGAAGAATCTCAGGAGCAGCTATCAGAACTTACCTTCTTGAGAGATCTCGTGTTTGCCAAGTTTCCGATCCCGAGCGCAATTATCACTGCTTTTACCTCCTTTGTGCTGCACCTCAGGAGGAAATTGAAAAGTACAAGCTGGGAAATCCCAAATCATTTCATTATCTTAATCAATCAAATTGCTATGAACTGGTTGATGTAAGTGATGCTCATGACTATCTTGCCACTAGAAGAGCTATGGATGTTGTTGGAATAAGTGCCAAGGAGCAGGAAGCAATTTTTAGAGTTGTTGCTGCAATTCTTCATCTCGGTAACATTGAATTTACAAAGGGCAAAGACGGCGACTCATCAGTTCCAAAAGACGACAAAGCGAAGTTTCATCTTAAAATGACTTCAGAGCTTCTCATGTGTGATAATGCTGGCCTTGAAGATGCATTATGTAAGCGTGTCATGATCACTCCTGAAGAAGTGATCAAACGAAGCCTGGATCCTCAAAGTGCGGCTATTAGTCGGGATGGTTTGGCCAAAACGATATATTCTCGGCTATTCGACTGGCTGGTTGATAAAATTAATGTCTCAATTGGACAAGATCCTAATTCCAAGTCCTTGATCGGTGTCCTTGATATCTACGGTTTTGAAAGCTTCAAAGCTAACAGTTTTGAGCAGTTCTGTATTAATTTCACAAATGAGAAGTTACAGCAACATTTCAATCAGCACGTTTTCAAAATGGAACAAGAAGAATACACGAAAGAAGAGATCGATTGGAGTTATATCGAGTTCGTTGACAACCAAGATGTGTTAGATCTCATTGAAAAGAAACCTGGTGGAATAGTGGCTCTCCTTGATGAAGCTTGCATGTTTCCGAAGTCGACACACGAAACATTTGCTAACAAGCTCTATCAGACTTTCAAAACACATAAGCGGTTCATAAAGCCAAAGCTTTCTCGAACGGATTTCACCATCGCTCATTATGCTGGAGAGGTTTTATATCAATCTGACCAGTTTTTGGACAAAAACAAGGATTATGTTGTTCCTGAATATCAGGATTTGTTGAGTGCCTCCAAATGTTCATTTGTTGCTGGCCTTTTTCCTCCACTAAAAGAAGAATCTGCAAAATCTTCTAAGTTTTCTTCAATCGGGTCTCGCTTTAAGCTACAACTACAACAGTTAATGGAGACATTAAATTCCACAGAGCCTCACTACATCAGATGTGTAAAGCCAAACAACCTCTTAAAACCTGCCATTTTCGAGAATGTTAACATAATGCAACAACTGCGGTGTGGTGGTGTCTTAGAGGCAATCAGAATCAGTTGTGCAGGGTACCCTACTCGCCGTGCGTTCTTTGAGTTCATTAATCGATTCGGAATTTTAGCTGAAGAATCTTTGGAAGGAAACTATGATGAAAAAAGTGTCTGCAAAAAGATACTAGAAAAGCAGGGACTTAAAGGGTTTCAGATTGGTAAGACAAAAGTATTCCTTAGAGCCGGTCAGATGGCTGAATTAGATGCTCGGAGAGCTGAGGTGCTGAGTAATGCAGCAAAGACTATTCAACGGCGCACACGAACCCATATCGCTCGCAAACAGTTTATTGCATTACGAAAGGCGACCATACATGTGCAATCTAGGTGGAGAGGAAAACTGGCTTGCAAACATTTCAAGAATTTGAAGAGGGAGGCAGCTGCTGTGAAAATTCAGAAAAATGCTAGAAGATTTCATGCGAGATCAGCCTATAAGAAACTACAAAGCTCAGTGCTTATTGTGCAAACTGGTTTAAGAGCAATGGCAGCTCGGAATGAATTCCGATTTAGGAAGCAGACAAAGGCGGCAATTATCATTCAGGCTCGATGGCGTTGCCATAAAGCTGCCTCGTACTATAAGAAACTTCAGAGAGGGTCAATAGTTGCACAATGTAGATGGAGAGGAAAAACTGCAAGAAAGGAACTTAGAAAACTCAAATTGGCTGCAAGGGAGACTGGTGCACTTAAAGAAGCAAAGGATAAGTTGGAAAAGAAAGTGGAAGAACTTACTTGGCGCATACAATTAGAAAAACGTCTAAGGACGGATCTGGAAGAGGCAAAAGCACAGGAGATAGCGAAATTCCAAAATATCGTGCAAGAACTGCAGGCGAAAGTTGATGAAACAAACGCATTGCTTGTAAAGGAGCGAGAGGTCGTGAAGAAGGCCACTGAAGAAGCACCTCCTGTTGTACAAGAAACCCAAGTTCTGGTTGAAGATACTAAGAAAATTGATGATTTGACGGAAGAAGTAGAAAGCTTAAAGACCTCGCTGGAGACGGAGAAGAACAGAGCTGATGAATATGAGAAAAAATATGGTGAAGTAGAACAGTCTAGAGAAGAACAACGCAAAAAGTTAGAAGACACAGAGAAAAAAGCTCATCAGCTCCAGGAATCATTGACCAGGCTAGAAGAGAAGCTTTCCAATTTGGAATCAGAGAATCAAGTTTTACGTCAACAAGCCGTGTCTATGGCACCTAATAAAATCCTCTCAGGACGGTCTAGATCGATTCTTCAGAGAGGTGCTGAAAGTGGTCATTATGGAGGGGAAGGGAGGACGCCTTTGGATCTTCACAGCCCTTCTATTAACCAAAGGGAATCAGAAGTAGAGGACAAACCTCAAAAATCTCTTAATGAGAAACAGCAAGAGAATCAAGAACTGCTCATTAGATGTATTGCACAGCACCTTGGCTTTGCAGCCAACAGGCCAATAGCTGCTTGTATCATCTACAAATGCCTGCTTCAATGGAGGTCGTTCGAAGTCGAACGCACCAGTGTATTCGATAGGATAATTCAAACCATTGGCCATGCCATTGAGACTCAGGATAACAACGACGTCTTGGCCTATTGGTTGTCCAATGCTTCAACGCTTCTCTTACTGCTTCAGCGCACTTTAAAAGCAAGTGGCGCTGCTGGAATGGCTCCACAACGTCGCCGATCATCATCAGCCACGCTATTCGGGAGGATGACTCAAAGTTTTCGAGGAGCTCCACAAGGAGTTAGTCTATCCTTAATCAATGGTGGAACTAGTGGTGGAGTGGACTCGTTACGACAAGTCGAAGCGAAGTACCCTGCTTTGCTGTTCAAGCAGCAGCTGACAGCCTATGTAGAGAAAATTTATGGAATGATAAGAGACAATTTGAAGAAAGAAATTTCTCCATTGCTAGGATTGTGCATCCAGGCACCAAGAACATCAAGGGCAAGTTTGGTTAAGGGATCTTCTCGTTCAGTTGCCACCACGGAGGCGCAACGTGCCTTAATCGCTCACTGGCAAGGAATCGTGAAGAGCCTCGGGAACTTCTTGAACACCTTAAAAGCAAATCATGTACCTCCATTTTTGGTTCGTAAAGTCTTCATACAAATATTTTCTTTCATCAACGTTCAACTATTTAACAGTCTTCTATTACGACGAGAGTGTTGTTCGTTTAGCAACGGTGAATACGTCAAAGCTGGACTGTCTGAATTAGAGCATTGGTGTTATAAAGCTACTGATGAGTATGCAGGTTCTGCTTGGGACGAGCTAAAGCATATACGACAAGCGATCGGGTTTCTGGTTATTCATCAGAAGCCAAAGAAGACGTTAGACGAAATAAGTCACGATCTATGCCCCGTACTAAGTATACAGCAGCTGTATCGTATCAGTACGATGTACTGGGACGACAAGTATGGTACTCATAGTGTGTCCCCTGATGTTATATCCAATATGAGGGTGTTAATGACTGAAGATTCGAACCATGCAATTAGTAATTCATTTCTATTGGACGACGATTCGAGTATTCCATTCTCAGTTGATGATTTATCAAAGTCTATGGAGCAAATAGACATCGGAGACATCGAACCACCGCCACTGATTCGGGAGAACTCAGGCTTTAGTTTCTTGTTACCTCGAACAGACTAA 4593 42.06 MQGTPVNIIVGSHVWIEDPEVAWLDGLVSKITGQEAEIEASNGKKVVAKLSKIYPKDMEAPAGGVDDMTKLSYLHEPGVLQNLKSRYELNEIYTYTGNILIAINPFQRLPHLYDGHMMHQYKGAPFGELSPHVFAVADVAYRAMVIEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKHGRISGAAIRTYLLERSRVCQVSDPERNYHCFYLLCAAPQEEIEKYKLGNPKSFHYLNQSNCYELVDVSDAHDYLATRRAMDVVGISAKEQEAIFRVVAAILHLGNIEFTKGKDGDSSVPKDDKAKFHLKMTSELLMCDNAGLEDALCKRVMITPEEVIKRSLDPQSAAISRDGLAKTIYSRLFDWLVDKINVSIGQDPNSKSLIGVLDIYGFESFKANSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIVALLDEACMFPKSTHETFANKLYQTFKTHKRFIKPKLSRTDFTIAHYAGEVLYQSDQFLDKNKDYVVPEYQDLLSASKCSFVAGLFPPLKEESAKSSKFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNNLLKPAIFENVNIMQQLRCGGVLEAIRISCAGYPTRRAFFEFINRFGILAEESLEGNYDEKSVCKKILEKQGLKGFQIGKTKVFLRAGQMAELDARRAEVLSNAAKTIQRRTRTHIARKQFIALRKATIHVQSRWRGKLACKHFKNLKREAAAVKIQKNARRFHARSAYKKLQSSVLIVQTGLRAMAARNEFRFRKQTKAAIIIQARWRCHKAASYYKKLQRGSIVAQCRWRGKTARKELRKLKLAARETGALKEAKDKLEKKVEELTWRIQLEKRLRTDLEEAKAQEIAKFQNIVQELQAKVDETNALLVKEREVVKKATEEAPPVVQETQVLVEDTKKIDDLTEEVESLKTSLETEKNRADEYEKKYGEVEQSREEQRKKLEDTEKKAHQLQESLTRLEEKLSNLESENQVLRQQAVSMAPNKILSGRSRSILQRGAESGHYGGEGRTPLDLHSPSINQRESEVEDKPQKSLNEKQQENQELLIRCIAQHLGFAANRPIAACIIYKCLLQWRSFEVERTSVFDRIIQTIGHAIETQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGAPQGVSLSLINGGTSGGVDSLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVATTEAQRALIAHWQGIVKSLGNFLNTLKANHVPPFLVRKVFIQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLSELEHWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRVLMTEDSNHAISNSFLLDDDSSIPFSVDDLSKSMEQIDIGDIEPPPLIRENSGFSFLLPRTD 1530
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 10512698 10523633 - CmoCh12G011620.1 Cmo12g01162 393850
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01162 1530 ProSiteProfiles IQ motif profile. 855 884 IPR000048 GO:0005515
Cmo12g01162 1530 ProSiteProfiles IQ motif profile. 832 859 IPR000048 GO:0005515
Cmo12g01162 1530 Gene3D Myosin VI head, motor domain, U50 subdomain 313 602 - -
Cmo12g01162 1530 Gene3D - 668 731 - -
Cmo12g01162 1530 ProSiteProfiles Myosin motor domain profile. 63 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo12g01162 1530 PANTHER MYOSIN-9 6 1527 - -
Cmo12g01162 1530 Coils Coil 969 1052 - -
Cmo12g01162 1530 SMART DIL_2 1348 1455 IPR002710 -
Cmo12g01162 1530 Coils Coil 917 958 - -
Cmo12g01162 1530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 786 884 IPR027417 -
Cmo12g01162 1530 ProSiteProfiles IQ motif profile. 759 788 IPR000048 GO:0005515
Cmo12g01162 1530 Coils Coil 878 912 - -
Cmo12g01162 1530 Pfam DIL domain 1349 1452 IPR002710 -
Cmo12g01162 1530 Gene3D Kinesin motor domain 66 663 IPR036961 -
Cmo12g01162 1530 ProSiteProfiles Dilute domain profile. 1160 1473 IPR002710 -
Cmo12g01162 1530 SMART iq_5 854 876 IPR000048 GO:0005515
Cmo12g01162 1530 SMART iq_5 831 853 IPR000048 GO:0005515
Cmo12g01162 1530 SMART iq_5 735 757 IPR000048 GO:0005515
Cmo12g01162 1530 SMART iq_5 806 828 IPR000048 GO:0005515
Cmo12g01162 1530 SMART iq_5 758 780 IPR000048 GO:0005515
Cmo12g01162 1530 SMART iq_5 783 805 IPR000048 GO:0005515
Cmo12g01162 1530 ProSiteProfiles IQ motif profile. 736 763 IPR000048 GO:0005515
Cmo12g01162 1530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 786 IPR027417 -
Cmo12g01162 1530 ProSiteProfiles IQ motif profile. 807 836 IPR000048 GO:0005515
Cmo12g01162 1530 PANTHER MYOSIN 6 1527 - -
Cmo12g01162 1530 Gene3D - 786 833 - -
Cmo12g01162 1530 Gene3D - 834 883 - -
Cmo12g01162 1530 Gene3D - 734 785 - -
Cmo12g01162 1530 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 9 58 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cmo12g01162 1530 MobiDBLite consensus disorder prediction 985 1030 - -
Cmo12g01162 1530 PRINTS Myosin heavy chain signature 197 224 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo12g01162 1530 PRINTS Myosin heavy chain signature 483 511 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo12g01162 1530 PRINTS Myosin heavy chain signature 150 175 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo12g01162 1530 PRINTS Myosin heavy chain signature 430 458 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo12g01162 1530 PRINTS Myosin heavy chain signature 93 112 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo12g01162 1530 ProSiteProfiles IQ motif profile. 784 811 IPR000048 GO:0005515
Cmo12g01162 1530 MobiDBLite consensus disorder prediction 1074 1112 - -
Cmo12g01162 1530 CDD MyosinXI_CBD 1111 1496 IPR037975 GO:0007015
Cmo12g01162 1530 Pfam Myosin N-terminal SH3-like domain 10 52 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cmo12g01162 1530 Gene3D - 440 624 - -
Cmo12g01162 1530 Pfam Myosin head (motor domain) 65 721 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo12g01162 1530 Pfam IQ calmodulin-binding motif 833 853 IPR000048 GO:0005515
Cmo12g01162 1530 Pfam IQ calmodulin-binding motif 760 780 IPR000048 GO:0005515
Cmo12g01162 1530 Pfam IQ calmodulin-binding motif 738 756 IPR000048 GO:0005515
Cmo12g01162 1530 Pfam IQ calmodulin-binding motif 786 805 IPR000048 GO:0005515
Cmo12g01162 1530 MobiDBLite consensus disorder prediction 1095 1111 - -
Cmo12g01162 1530 Gene3D - 253 311 - -
Cmo12g01162 1530 SMART MYSc_2a 58 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo12g01162 1530 CDD MYSc_Myo11 77 721 IPR036018 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00050 Cmo-Chr8:272375 Cmo12g01162 Cmo-Chr12:10512698 0 dispersed
Cmo08g00267 Cmo-Chr8:1647323 Cmo12g01162 Cmo-Chr12:10512698 0 dispersed
Cmo08g00562 Cmo-Chr8:3441423 Cmo12g01162 Cmo-Chr12:10512698 0 dispersed
Cmo10g00772 Cmo-Chr10:3574855 Cmo12g01162 Cmo-Chr12:10512698 0 dispersed
Cmo11g00730 Cmo-Chr11:3538325 Cmo12g01162 Cmo-Chr12:10512698 0 dispersed
Cmo12g01162 Cmo-Chr12:10512698 Cmo17g00888 Cmo-Chr17:8068228 0 dispersed
Cmo17g01287 Cmo-Chr17:10110730 Cmo12g01162 Cmo-Chr12:10512698 0 dispersed
Cmo05g00424 Cmo-Chr5:1949703 Cmo12g01162 Cmo-Chr12:10512698 1.31E-50 transposed
Cmo12g01162 Cmo-Chr12:10512698 Cmo05g01253 Cmo-Chr5:9725398 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01162 K10357 - csv:101206606 2884.36