Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo12g01162 | ATGCAGGGTACACCAGTTAACATTATTGTAGGTTCTCATGTCTGGATTGAGGATCCAGAAGTTGCTTGGCTTGATGGATTGGTATCCAAGATTACAGGGCAGGAAGCCGAGATCGAAGCCAGCAATGGAAAAAAAGTTGTTGCAAAATTATCCAAAATATATCCAAAAGATATGGAGGCTCCCGCTGGTGGCGTCGATGATATGACGAAGTTATCTTACCTGCACGAGCCGGGAGTTCTACAAAATTTAAAAAGTCGATATGAACTCAACGAAATATATACATACACTGGCAATATTCTTATTGCAATTAATCCATTCCAAAGATTGCCTCATCTTTATGATGGTCACATGATGCATCAATACAAAGGGGCACCATTTGGAGAGCTGAGTCCTCATGTTTTTGCTGTTGCTGATGTTGCTTACAGGGCAATGGTTATTGAGGGTAAAAGTAATTCAATTCTGGTCAGTGGTGAAAGTGGAGCAGGGAAAACTGAAACCACAAAGATGCTTATGCGGTACCTTGCGTTTTTAGGTGGTCGGGCGGCCACTGAAGGACGAACAGTTGAGCAACAAGTTCTTGAGTCAAATCCAGTGCTTGAAGCTTTTGGAAATGCTAAAACTGTCAGAAATAACAATTCCAGTCGCTTTGGTAAGTTTGTTGAAATCCAGTTTGACAAGCATGGAAGAATCTCAGGAGCAGCTATCAGAACTTACCTTCTTGAGAGATCTCGTGTTTGCCAAGTTTCCGATCCCGAGCGCAATTATCACTGCTTTTACCTCCTTTGTGCTGCACCTCAGGAGGAAATTGAAAAGTACAAGCTGGGAAATCCCAAATCATTTCATTATCTTAATCAATCAAATTGCTATGAACTGGTTGATGTAAGTGATGCTCATGACTATCTTGCCACTAGAAGAGCTATGGATGTTGTTGGAATAAGTGCCAAGGAGCAGGAAGCAATTTTTAGAGTTGTTGCTGCAATTCTTCATCTCGGTAACATTGAATTTACAAAGGGCAAAGACGGCGACTCATCAGTTCCAAAAGACGACAAAGCGAAGTTTCATCTTAAAATGACTTCAGAGCTTCTCATGTGTGATAATGCTGGCCTTGAAGATGCATTATGTAAGCGTGTCATGATCACTCCTGAAGAAGTGATCAAACGAAGCCTGGATCCTCAAAGTGCGGCTATTAGTCGGGATGGTTTGGCCAAAACGATATATTCTCGGCTATTCGACTGGCTGGTTGATAAAATTAATGTCTCAATTGGACAAGATCCTAATTCCAAGTCCTTGATCGGTGTCCTTGATATCTACGGTTTTGAAAGCTTCAAAGCTAACAGTTTTGAGCAGTTCTGTATTAATTTCACAAATGAGAAGTTACAGCAACATTTCAATCAGCACGTTTTCAAAATGGAACAAGAAGAATACACGAAAGAAGAGATCGATTGGAGTTATATCGAGTTCGTTGACAACCAAGATGTGTTAGATCTCATTGAAAAGAAACCTGGTGGAATAGTGGCTCTCCTTGATGAAGCTTGCATGTTTCCGAAGTCGACACACGAAACATTTGCTAACAAGCTCTATCAGACTTTCAAAACACATAAGCGGTTCATAAAGCCAAAGCTTTCTCGAACGGATTTCACCATCGCTCATTATGCTGGAGAGGTTTTATATCAATCTGACCAGTTTTTGGACAAAAACAAGGATTATGTTGTTCCTGAATATCAGGATTTGTTGAGTGCCTCCAAATGTTCATTTGTTGCTGGCCTTTTTCCTCCACTAAAAGAAGAATCTGCAAAATCTTCTAAGTTTTCTTCAATCGGGTCTCGCTTTAAGCTACAACTACAACAGTTAATGGAGACATTAAATTCCACAGAGCCTCACTACATCAGATGTGTAAAGCCAAACAACCTCTTAAAACCTGCCATTTTCGAGAATGTTAACATAATGCAACAACTGCGGTGTGGTGGTGTCTTAGAGGCAATCAGAATCAGTTGTGCAGGGTACCCTACTCGCCGTGCGTTCTTTGAGTTCATTAATCGATTCGGAATTTTAGCTGAAGAATCTTTGGAAGGAAACTATGATGAAAAAAGTGTCTGCAAAAAGATACTAGAAAAGCAGGGACTTAAAGGGTTTCAGATTGGTAAGACAAAAGTATTCCTTAGAGCCGGTCAGATGGCTGAATTAGATGCTCGGAGAGCTGAGGTGCTGAGTAATGCAGCAAAGACTATTCAACGGCGCACACGAACCCATATCGCTCGCAAACAGTTTATTGCATTACGAAAGGCGACCATACATGTGCAATCTAGGTGGAGAGGAAAACTGGCTTGCAAACATTTCAAGAATTTGAAGAGGGAGGCAGCTGCTGTGAAAATTCAGAAAAATGCTAGAAGATTTCATGCGAGATCAGCCTATAAGAAACTACAAAGCTCAGTGCTTATTGTGCAAACTGGTTTAAGAGCAATGGCAGCTCGGAATGAATTCCGATTTAGGAAGCAGACAAAGGCGGCAATTATCATTCAGGCTCGATGGCGTTGCCATAAAGCTGCCTCGTACTATAAGAAACTTCAGAGAGGGTCAATAGTTGCACAATGTAGATGGAGAGGAAAAACTGCAAGAAAGGAACTTAGAAAACTCAAATTGGCTGCAAGGGAGACTGGTGCACTTAAAGAAGCAAAGGATAAGTTGGAAAAGAAAGTGGAAGAACTTACTTGGCGCATACAATTAGAAAAACGTCTAAGGACGGATCTGGAAGAGGCAAAAGCACAGGAGATAGCGAAATTCCAAAATATCGTGCAAGAACTGCAGGCGAAAGTTGATGAAACAAACGCATTGCTTGTAAAGGAGCGAGAGGTCGTGAAGAAGGCCACTGAAGAAGCACCTCCTGTTGTACAAGAAACCCAAGTTCTGGTTGAAGATACTAAGAAAATTGATGATTTGACGGAAGAAGTAGAAAGCTTAAAGACCTCGCTGGAGACGGAGAAGAACAGAGCTGATGAATATGAGAAAAAATATGGTGAAGTAGAACAGTCTAGAGAAGAACAACGCAAAAAGTTAGAAGACACAGAGAAAAAAGCTCATCAGCTCCAGGAATCATTGACCAGGCTAGAAGAGAAGCTTTCCAATTTGGAATCAGAGAATCAAGTTTTACGTCAACAAGCCGTGTCTATGGCACCTAATAAAATCCTCTCAGGACGGTCTAGATCGATTCTTCAGAGAGGTGCTGAAAGTGGTCATTATGGAGGGGAAGGGAGGACGCCTTTGGATCTTCACAGCCCTTCTATTAACCAAAGGGAATCAGAAGTAGAGGACAAACCTCAAAAATCTCTTAATGAGAAACAGCAAGAGAATCAAGAACTGCTCATTAGATGTATTGCACAGCACCTTGGCTTTGCAGCCAACAGGCCAATAGCTGCTTGTATCATCTACAAATGCCTGCTTCAATGGAGGTCGTTCGAAGTCGAACGCACCAGTGTATTCGATAGGATAATTCAAACCATTGGCCATGCCATTGAGACTCAGGATAACAACGACGTCTTGGCCTATTGGTTGTCCAATGCTTCAACGCTTCTCTTACTGCTTCAGCGCACTTTAAAAGCAAGTGGCGCTGCTGGAATGGCTCCACAACGTCGCCGATCATCATCAGCCACGCTATTCGGGAGGATGACTCAAAGTTTTCGAGGAGCTCCACAAGGAGTTAGTCTATCCTTAATCAATGGTGGAACTAGTGGTGGAGTGGACTCGTTACGACAAGTCGAAGCGAAGTACCCTGCTTTGCTGTTCAAGCAGCAGCTGACAGCCTATGTAGAGAAAATTTATGGAATGATAAGAGACAATTTGAAGAAAGAAATTTCTCCATTGCTAGGATTGTGCATCCAGGCACCAAGAACATCAAGGGCAAGTTTGGTTAAGGGATCTTCTCGTTCAGTTGCCACCACGGAGGCGCAACGTGCCTTAATCGCTCACTGGCAAGGAATCGTGAAGAGCCTCGGGAACTTCTTGAACACCTTAAAAGCAAATCATGTACCTCCATTTTTGGTTCGTAAAGTCTTCATACAAATATTTTCTTTCATCAACGTTCAACTATTTAACAGTCTTCTATTACGACGAGAGTGTTGTTCGTTTAGCAACGGTGAATACGTCAAAGCTGGACTGTCTGAATTAGAGCATTGGTGTTATAAAGCTACTGATGAGTATGCAGGTTCTGCTTGGGACGAGCTAAAGCATATACGACAAGCGATCGGGTTTCTGGTTATTCATCAGAAGCCAAAGAAGACGTTAGACGAAATAAGTCACGATCTATGCCCCGTACTAAGTATACAGCAGCTGTATCGTATCAGTACGATGTACTGGGACGACAAGTATGGTACTCATAGTGTGTCCCCTGATGTTATATCCAATATGAGGGTGTTAATGACTGAAGATTCGAACCATGCAATTAGTAATTCATTTCTATTGGACGACGATTCGAGTATTCCATTCTCAGTTGATGATTTATCAAAGTCTATGGAGCAAATAGACATCGGAGACATCGAACCACCGCCACTGATTCGGGAGAACTCAGGCTTTAGTTTCTTGTTACCTCGAACAGACTAA | 4593 | 42.06 | MQGTPVNIIVGSHVWIEDPEVAWLDGLVSKITGQEAEIEASNGKKVVAKLSKIYPKDMEAPAGGVDDMTKLSYLHEPGVLQNLKSRYELNEIYTYTGNILIAINPFQRLPHLYDGHMMHQYKGAPFGELSPHVFAVADVAYRAMVIEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKHGRISGAAIRTYLLERSRVCQVSDPERNYHCFYLLCAAPQEEIEKYKLGNPKSFHYLNQSNCYELVDVSDAHDYLATRRAMDVVGISAKEQEAIFRVVAAILHLGNIEFTKGKDGDSSVPKDDKAKFHLKMTSELLMCDNAGLEDALCKRVMITPEEVIKRSLDPQSAAISRDGLAKTIYSRLFDWLVDKINVSIGQDPNSKSLIGVLDIYGFESFKANSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIVALLDEACMFPKSTHETFANKLYQTFKTHKRFIKPKLSRTDFTIAHYAGEVLYQSDQFLDKNKDYVVPEYQDLLSASKCSFVAGLFPPLKEESAKSSKFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNNLLKPAIFENVNIMQQLRCGGVLEAIRISCAGYPTRRAFFEFINRFGILAEESLEGNYDEKSVCKKILEKQGLKGFQIGKTKVFLRAGQMAELDARRAEVLSNAAKTIQRRTRTHIARKQFIALRKATIHVQSRWRGKLACKHFKNLKREAAAVKIQKNARRFHARSAYKKLQSSVLIVQTGLRAMAARNEFRFRKQTKAAIIIQARWRCHKAASYYKKLQRGSIVAQCRWRGKTARKELRKLKLAARETGALKEAKDKLEKKVEELTWRIQLEKRLRTDLEEAKAQEIAKFQNIVQELQAKVDETNALLVKEREVVKKATEEAPPVVQETQVLVEDTKKIDDLTEEVESLKTSLETEKNRADEYEKKYGEVEQSREEQRKKLEDTEKKAHQLQESLTRLEEKLSNLESENQVLRQQAVSMAPNKILSGRSRSILQRGAESGHYGGEGRTPLDLHSPSINQRESEVEDKPQKSLNEKQQENQELLIRCIAQHLGFAANRPIAACIIYKCLLQWRSFEVERTSVFDRIIQTIGHAIETQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGAPQGVSLSLINGGTSGGVDSLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVATTEAQRALIAHWQGIVKSLGNFLNTLKANHVPPFLVRKVFIQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLSELEHWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRVLMTEDSNHAISNSFLLDDDSSIPFSVDDLSKSMEQIDIGDIEPPPLIRENSGFSFLLPRTD | 1530 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 10512698 | 10523633 | - | CmoCh12G011620.1 | Cmo12g01162 | 393850 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo12g01162 | 1530 | ProSiteProfiles | IQ motif profile. | 855 | 884 | IPR000048 | GO:0005515 | |
| Cmo12g01162 | 1530 | ProSiteProfiles | IQ motif profile. | 832 | 859 | IPR000048 | GO:0005515 | |
| Cmo12g01162 | 1530 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 313 | 602 | - | - | |
| Cmo12g01162 | 1530 | Gene3D | - | 668 | 731 | - | - | |
| Cmo12g01162 | 1530 | ProSiteProfiles | Myosin motor domain profile. | 63 | 733 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cmo12g01162 | 1530 | PANTHER | MYOSIN-9 | 6 | 1527 | - | - | |
| Cmo12g01162 | 1530 | Coils | Coil | 969 | 1052 | - | - | |
| Cmo12g01162 | 1530 | SMART | DIL_2 | 1348 | 1455 | IPR002710 | - | |
| Cmo12g01162 | 1530 | Coils | Coil | 917 | 958 | - | - | |
| Cmo12g01162 | 1530 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 786 | 884 | IPR027417 | - | |
| Cmo12g01162 | 1530 | ProSiteProfiles | IQ motif profile. | 759 | 788 | IPR000048 | GO:0005515 | |
| Cmo12g01162 | 1530 | Coils | Coil | 878 | 912 | - | - | |
| Cmo12g01162 | 1530 | Pfam | DIL domain | 1349 | 1452 | IPR002710 | - | |
| Cmo12g01162 | 1530 | Gene3D | Kinesin motor domain | 66 | 663 | IPR036961 | - | |
| Cmo12g01162 | 1530 | ProSiteProfiles | Dilute domain profile. | 1160 | 1473 | IPR002710 | - | |
| Cmo12g01162 | 1530 | SMART | iq_5 | 854 | 876 | IPR000048 | GO:0005515 | |
| Cmo12g01162 | 1530 | SMART | iq_5 | 831 | 853 | IPR000048 | GO:0005515 | |
| Cmo12g01162 | 1530 | SMART | iq_5 | 735 | 757 | IPR000048 | GO:0005515 | |
| Cmo12g01162 | 1530 | SMART | iq_5 | 806 | 828 | IPR000048 | GO:0005515 | |
| Cmo12g01162 | 1530 | SMART | iq_5 | 758 | 780 | IPR000048 | GO:0005515 | |
| Cmo12g01162 | 1530 | SMART | iq_5 | 783 | 805 | IPR000048 | GO:0005515 | |
| Cmo12g01162 | 1530 | ProSiteProfiles | IQ motif profile. | 736 | 763 | IPR000048 | GO:0005515 | |
| Cmo12g01162 | 1530 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 39 | 786 | IPR027417 | - | |
| Cmo12g01162 | 1530 | ProSiteProfiles | IQ motif profile. | 807 | 836 | IPR000048 | GO:0005515 | |
| Cmo12g01162 | 1530 | PANTHER | MYOSIN | 6 | 1527 | - | - | |
| Cmo12g01162 | 1530 | Gene3D | - | 786 | 833 | - | - | |
| Cmo12g01162 | 1530 | Gene3D | - | 834 | 883 | - | - | |
| Cmo12g01162 | 1530 | Gene3D | - | 734 | 785 | - | - | |
| Cmo12g01162 | 1530 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 9 | 58 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Cmo12g01162 | 1530 | MobiDBLite | consensus disorder prediction | 985 | 1030 | - | - | |
| Cmo12g01162 | 1530 | PRINTS | Myosin heavy chain signature | 197 | 224 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cmo12g01162 | 1530 | PRINTS | Myosin heavy chain signature | 483 | 511 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cmo12g01162 | 1530 | PRINTS | Myosin heavy chain signature | 150 | 175 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cmo12g01162 | 1530 | PRINTS | Myosin heavy chain signature | 430 | 458 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cmo12g01162 | 1530 | PRINTS | Myosin heavy chain signature | 93 | 112 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cmo12g01162 | 1530 | ProSiteProfiles | IQ motif profile. | 784 | 811 | IPR000048 | GO:0005515 | |
| Cmo12g01162 | 1530 | MobiDBLite | consensus disorder prediction | 1074 | 1112 | - | - | |
| Cmo12g01162 | 1530 | CDD | MyosinXI_CBD | 1111 | 1496 | IPR037975 | GO:0007015 | |
| Cmo12g01162 | 1530 | Pfam | Myosin N-terminal SH3-like domain | 10 | 52 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Cmo12g01162 | 1530 | Gene3D | - | 440 | 624 | - | - | |
| Cmo12g01162 | 1530 | Pfam | Myosin head (motor domain) | 65 | 721 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cmo12g01162 | 1530 | Pfam | IQ calmodulin-binding motif | 833 | 853 | IPR000048 | GO:0005515 | |
| Cmo12g01162 | 1530 | Pfam | IQ calmodulin-binding motif | 760 | 780 | IPR000048 | GO:0005515 | |
| Cmo12g01162 | 1530 | Pfam | IQ calmodulin-binding motif | 738 | 756 | IPR000048 | GO:0005515 | |
| Cmo12g01162 | 1530 | Pfam | IQ calmodulin-binding motif | 786 | 805 | IPR000048 | GO:0005515 | |
| Cmo12g01162 | 1530 | MobiDBLite | consensus disorder prediction | 1095 | 1111 | - | - | |
| Cmo12g01162 | 1530 | Gene3D | - | 253 | 311 | - | - | |
| Cmo12g01162 | 1530 | SMART | MYSc_2a | 58 | 734 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cmo12g01162 | 1530 | CDD | MYSc_Myo11 | 77 | 721 | IPR036018 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo08g00050 | Cmo-Chr8:272375 | Cmo12g01162 | Cmo-Chr12:10512698 | 0 | dispersed | |
| Cmo08g00267 | Cmo-Chr8:1647323 | Cmo12g01162 | Cmo-Chr12:10512698 | 0 | dispersed | |
| Cmo08g00562 | Cmo-Chr8:3441423 | Cmo12g01162 | Cmo-Chr12:10512698 | 0 | dispersed | |
| Cmo10g00772 | Cmo-Chr10:3574855 | Cmo12g01162 | Cmo-Chr12:10512698 | 0 | dispersed | |
| Cmo11g00730 | Cmo-Chr11:3538325 | Cmo12g01162 | Cmo-Chr12:10512698 | 0 | dispersed | |
| Cmo12g01162 | Cmo-Chr12:10512698 | Cmo17g00888 | Cmo-Chr17:8068228 | 0 | dispersed | |
| Cmo17g01287 | Cmo-Chr17:10110730 | Cmo12g01162 | Cmo-Chr12:10512698 | 0 | dispersed | |
| Cmo05g00424 | Cmo-Chr5:1949703 | Cmo12g01162 | Cmo-Chr12:10512698 | 1.31E-50 | transposed | |
| Cmo12g01162 | Cmo-Chr12:10512698 | Cmo05g01253 | Cmo-Chr5:9725398 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo12g01162 | K10357 | - | csv:101206606 | 2884.36 |