Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01164 ATGGCTAACCGGTGGTGGACCTCCGCCCAGATGGGTCTTCCCGGAGTTGATCATACATCCACAACCTCCTCTGCCTTGAGAAAACCAGATCTCGGAATCTCAATGAACAACAACGGCGGTGGTGGCAGCGATGACGATGACGATAGAGACAACGGTGGCAGCGATGAGCCTAAGGAAGGAGCTGTCGACGTTCCCTCTCGCCGCCCTCGTGGCCGTCCACCCGGGTCTAAGAATAAGCCTAAGCCTCCTATCTTTGTTACTAGAGATAGCCCTAATGCCCTAAAAAGCCATGTCATGGAGATTTCTAATGGCGCTGATATGGTTGAGTGTGTCGCTCAATTCTCCCGTCGTCGTCAGAAAGGTGTGTCTGTGCTTAGTGGTAGTGGGACGGTAACGAACGTGACCCTTCGGCAACCGTCGGCCCCTGGTGCAGTCTTGACACTCCATGGTCGATTTGAGATCCTTTCGTTGACCGGAACTTTCCTCCCTGGACCAGCTCCGCCCGGCTCGGCGGGCCTAACGATCTACTTAGCTGGTGGTCAAGGGCAAGTGGTGGGTGGTACTGTCGTCGGGCCACTCACTGCTGCCGGTCCGGTGATGGTGATAGCTGCGACGTTTTCCAATGCGACATACGAGCGATTACCGTTGGAAGAGGAGGAGGACGGAGGAGGAGGAGGACAAGGTCTGGCATCAACCGGAGGTGGTGGTGGAGGGGATACTTCACCACAAGGCATTGGTGGCGGAGTGGGAGATCCATCAGCTATGCCGCCGTTGTACAATTTACCGCCGAACTTACTGCCGAATGGTGGCGGTGGGCAGATGAATCAGGAGGCTTATTCTTGGGCTCACGGCGGCCGGCCGCCGTTCTAA 870 56.44 MANRWWTSAQMGLPGVDHTSTTSSALRKPDLGISMNNNGGGGSDDDDDRDNGGSDEPKEGAVDVPSRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEISNGADMVECVAQFSRRRQKGVSVLSGSGTVTNVTLRQPSAPGAVLTLHGRFEILSLTGTFLPGPAPPGSAGLTIYLAGGQGQVVGGTVVGPLTAAGPVMVIAATFSNATYERLPLEEEEDGGGGGQGLASTGGGGGGDTSPQGIGGGVGDPSAMPPLYNLPPNLLPNGGGGQMNQEAYSWAHGGRPPF 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10534843 10536178 + CmoCh12G011640.1 Cmo12g01164 393852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01164 289 ProSiteProfiles PPC domain profile profile. 91 229 IPR005175 -
Cmo12g01164 289 Pfam Plants and Prokaryotes Conserved (PCC) domain 96 208 IPR005175 -
Cmo12g01164 289 PIRSF ESCAROLA 10 289 IPR014476 GO:0003680
Cmo12g01164 289 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 289 IPR014476 GO:0003680
Cmo12g01164 289 CDD DUF296 95 178 IPR005175 -
Cmo12g01164 289 Gene3D - 95 221 - -
Cmo12g01164 289 SUPERFAMILY AF0104/ALDC/Ptd012-like 92 219 - -
Cmo12g01164 289 MobiDBLite consensus disorder prediction 1 91 - -
Cmo12g01164 289 MobiDBLite consensus disorder prediction 42 66 - -
Cmo12g01164 289 MobiDBLite consensus disorder prediction 217 289 - -
Cmo12g01164 289 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 7 289 - -
Cmo12g01164 289 MobiDBLite consensus disorder prediction 13 41 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01345 Cmo-Chr6:9973532 Cmo12g01164 Cmo-Chr12:10534843 2.37E-78 dispersed
Cmo12g01164 Cmo-Chr12:10534843 Cmo04g01239 Cmo-Chr4:6293402 2.13E-78 dispersed
Cmo12g01164 Cmo-Chr12:10534843 Cmo05g01254 Cmo-Chr5:9746104 4.91E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01164 - - cpep:111799159 422.165