Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01173 ATGGCGGATAAAGGCAGAGATGGTGGCCACTCGAGTTTACTCGACGGGAAGTACGAATTAGGCCGTCTTTTAGGGCACGGGACTTTTGCAAAGGTTTACCATGCTCGAAATCTGCGAACGGGGAAGACTGTTGCGATGAAAGTGGTTGGTAAGGAGAAGATCATCAGAGTCGGCATGACGGAGCAGATCAAGAGAGAGATCTCTGTGATGAAAATGGTGAAGCATCCGAATATTGTTGAGCTTCATGAGGTGATGGCGAGTAAATCGAAGATCTACTTTGCGATGGAGTTTGTGAGAGGCGGTGAACTGTTTACCAAAATCGCGAAAGGTCGGTTGAGAGAGGATGTGGCTAGGGTTTACTTTCAGCAATTGATCTCTGCGATTGATTTCTGCCATAGCCGTGGTGTTTACCATCGCGATTTGAAACCGGAGAATCTCCTCCTCGACGAAGACGGTAACCTTAAGGTCACTGATTTCGGCCTCACCGCCTTCTCGGAGCACTTGAAGCAGGACGGATTATTGCACACTACATGCGGAACTCCAGCATACGTCGCGCCGGAGGTCATCGGAAAGCAGGGATACGATGGCGCTAAGGCGGATCTGTGGTCTTGTGGAGTGATCCTCTACGTTCTTCTCGCTGGATACCTTCCATTTCAGGACGACAATATGGTGGCGATGTACAAGAAAATATACAGAGGCGACTTCAAATGTCCACCGTGGTTCTCATCCGAAGCCCGGCGTCTCGTCACGAAGCTTCTCGACCCGAATCCAGTGACCAGAATCGGGATCACGAAGATCACATCATCGTCATGGTTCAAGAAATCGGTACCGAAGTCTATAATTACGAAGGAAGAACAAGAAGGAATCGAGGAAAATTTCACGAAATCGAAGCAACCAGCGGAGACATTAAACGCATTCCACATAATTTCCCTATCGGAAGGGTTCGATCTGTCGCCGTTGTTCGAGGAGAAGAAGAGGGAGGACAAAGAGGAGATGAGATTCGCGACATCATCGCCGGCGAGCAGTGTGATATCGAAGCTTGAGGAAGTAGCAAAGGCGGTGAAGTTCGATGTGAAGAAGAGCGAATCATGGGTTCGATTGCAGGGGCAAGAAAAGGGGAGGAAGGGGAAACTTGCAATTGCGGCGGATATCTTCGCCTTGACGCCGTCGTTTGTGGTGGTGGAGGTAAAGAAGGACAACGGAGATACTTTGGAGTACAACCAGTTCTGTAGGAAGGAGCTCCGGCCGGCGTTGAAGGACATTGTTTGGACATCTCCGACTGAGAATTCGACCCCAGCTTGA 1302 49.77 MADKGRDGGHSSLLDGKYELGRLLGHGTFAKVYHARNLRTGKTVAMKVVGKEKIIRVGMTEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMEFVRGGELFTKIAKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDEDGNLKVTDFGLTAFSEHLKQDGLLHTTCGTPAYVAPEVIGKQGYDGAKADLWSCGVILYVLLAGYLPFQDDNMVAMYKKIYRGDFKCPPWFSSEARRLVTKLLDPNPVTRIGITKITSSSWFKKSVPKSIITKEEQEGIEENFTKSKQPAETLNAFHIISLSEGFDLSPLFEEKKREDKEEMRFATSSPASSVISKLEEVAKAVKFDVKKSESWVRLQGQEKGRKGKLAIAADIFALTPSFVVVEVKKDNGDTLEYNQFCRKELRPALKDIVWTSPTENSTPA 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10616139 10617440 + CmoCh12G011730.1 Cmo12g01173 393861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01173 433 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01173 433 Gene3D Kinase associated domain 1, KA1 297 424 - -
Cmo12g01173 433 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 10 431 - -
Cmo12g01173 433 SUPERFAMILY Protein kinase-like (PK-like) 15 285 IPR011009 -
Cmo12g01173 433 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01173 433 Gene3D Phosphorylase Kinase; domain 1 15 99 - -
Cmo12g01173 433 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
Cmo12g01173 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Cmo12g01173 433 CDD STKc_SnRK3 17 271 - -
Cmo12g01173 433 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01173 433 Pfam NAF domain 301 360 IPR004041 GO:0007165
Cmo12g01173 433 ProSiteProfiles NAF domain profile. 298 322 IPR018451 GO:0007165
Cmo12g01173 433 CDD CIPK_C 304 419 - -
Cmo12g01173 433 PANTHER - 10 431 - -
Cmo12g01173 433 Gene3D Transferase(Phosphotransferase) domain 1 100 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00274 Cmo-Chr6:1382179 Cmo12g01173 Cmo-Chr12:10616139 1.31E-48 dispersed
Cmo10g00509 Cmo-Chr10:2286667 Cmo12g01173 Cmo-Chr12:10616139 0 dispersed
Cmo11g00466 Cmo-Chr11:2282701 Cmo12g01173 Cmo-Chr12:10616139 0 dispersed
Cmo12g01173 Cmo-Chr12:10616139 Cmo13g00625 Cmo-Chr13:6757756 0 dispersed
Cmo17g00061 Cmo-Chr17:309987 Cmo12g01173 Cmo-Chr12:10616139 9.67E-153 dispersed
Cmo12g01173 Cmo-Chr12:10616139 Cmo05g01262 Cmo-Chr5:9803375 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74744 PF00069 Pkinase 7.00E-73 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01173 - K07198 csv:101208458 818.92