Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01174 ATGAGACTCACCAACTCCCTCCCCGACCTCCATAGCAACCGCCGCAACCGGCCGCCAGAGACCGATGCCTCTCAACTCCACCACCACCAAAACCACCTTCAAGCCTCTCATCTCCATCCCTCTTCCTTCTCCTCCGACGATTTCCTCGACCAAATCCTCTCCTCCATCCCCCTTCCCTGGGAACTCCCTACCGGTCTTCCAAATCCCCACTCGAACCTCCCTCCTCAGCCACCGCAACTCCCTCGAAATCCCGACAATGCCGCTTTTCAGATCGGCGACACCACTCCAGCCGCCAAAATGGCCATGGCCATGCTTCACCAGCAGTTACTCACCACCGCGGCAGATTCCAGTCTCCTTACATTGCCTGGAAACGACGTCGTTGAAGTCGAAGGCTCTTCGTCCTTCAAATGCCCTAATCCGATTATCGTCGACGGTTCCGTCAATCCGTCTCTCTTCAACGAATTCACCGGATTCCTCAACGCCTCCGGCTCCAGCCATAGCCATACCCTGAATCAATCTCAGGGAAATTCAACTTCAACTTCACAGACACAGAGCTTCGGAGCTCCAGTATCAGCCAATACTCCACCTCCGGTGGGGACTGGTTCCGGCGGTGGTGCTAGCGCAGCGGCGCAGCCGCGACAGAGAGTCAGAGCTCGGCGAGGTCAAGCGACGGATCCTCACAGTATTGCGGAAAGATTACGGAGAGAGCGAATTGCAGAGAGAATGAAAGCTCTACAAGAACTGGTTCCCAACGCTAACAAGACAGACAAGGCTTCAATGCTGGATGAGATCATAGACTACGTGAAGTTCCTCCAGCTTCAAGTCAAAGTTCTGAGTATGAGCAGGCTGGGCGGCGCCACTGCCTCCATGCCGTCCCAGCTTGTCGCCGACATGTCCTCCCACTCTGAGGGTGGGATCCACAACCAGTCCAATGGAACCGGAGGAGCTGCCGGACAGACGTTCGCCGGAGCTCCGGCAAGTAATGACACGATGACGGTGACGGAGCATCAGGTGGTGAAGTTAATGGAGAAGGACATGGGCTCCGCCATGCAGTACTTACAAGGCAAAGGCCTTTGTCTCATGCCCATCTCTCTAGCCACCGCTATCTCCACCGCCACATGTCACAGCCGCCCTGTTACAGCCTCTAGAGGCGGCGGAGATCGCCCTACCTCACCCAGCCTGTCGGCGTTGACCGTTCAGTCAACCGCCTTGCGTAACGGCACCGTCAAAGATAAGGCCTCTATTTCTCGGCCGTGA 1257 56.48 MRLTNSLPDLHSNRRNRPPETDASQLHHHQNHLQASHLHPSSFSSDDFLDQILSSIPLPWELPTGLPNPHSNLPPQPPQLPRNPDNAAFQIGDTTPAAKMAMAMLHQQLLTTAADSSLLTLPGNDVVEVEGSSSFKCPNPIIVDGSVNPSLFNEFTGFLNASGSSHSHTLNQSQGNSTSTSQTQSFGAPVSANTPPPVGTGSGGGASAAAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGATASMPSQLVADMSSHSEGGIHNQSNGTGGAAGQTFAGAPASNDTMTVTEHQVVKLMEKDMGSAMQYLQGKGLCLMPISLATAISTATCHSRPVTASRGGGDRPTSPSLSALTVQSTALRNGTVKDKASISRP 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10624309 10628311 - CmoCh12G011740.1 Cmo12g01174 393862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01174 418 Gene3D - 217 279 IPR036638 GO:0046983
Cmo12g01174 418 MobiDBLite consensus disorder prediction 13 27 - -
Cmo12g01174 418 SMART finulus 228 277 IPR011598 GO:0046983
Cmo12g01174 418 PANTHER TRANSCRIPTION FACTOR BHLH69 40 382 - -
Cmo12g01174 418 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 40 382 - -
Cmo12g01174 418 Pfam Helix-loop-helix DNA-binding domain 227 272 IPR011598 GO:0046983
Cmo12g01174 418 MobiDBLite consensus disorder prediction 386 418 - -
Cmo12g01174 418 MobiDBLite consensus disorder prediction 377 418 - -
Cmo12g01174 418 MobiDBLite consensus disorder prediction 300 329 - -
Cmo12g01174 418 MobiDBLite consensus disorder prediction 163 227 - -
Cmo12g01174 418 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 222 271 IPR011598 GO:0046983
Cmo12g01174 418 MobiDBLite consensus disorder prediction 163 200 - -
Cmo12g01174 418 MobiDBLite consensus disorder prediction 1 39 - -
Cmo12g01174 418 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 220 281 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00511 Cmo12g01174 CCT
Cmo11g00470 Cmo12g01174 CCT
Cmo05g01263 Cmo12g01174 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00511 Cmo-Chr10:2307147 Cmo12g01174 Cmo-Chr12:10624309 3.99E-108 dispersed
Cmo11g00470 Cmo-Chr11:2301693 Cmo12g01174 Cmo-Chr12:10624309 2.36E-98 dispersed
Cmo12g01174 Cmo-Chr12:10624309 Cmo17g01190 Cmo-Chr17:9573292 3.26E-48 dispersed
Cmo02g01853 Cmo-Chr2:10464025 Cmo12g01174 Cmo-Chr12:10624309 1.13E-10 transposed
Cmo12g01174 Cmo-Chr12:10624309 Cmo05g01263 Cmo-Chr5:9813411 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10776 PF00010 HLH 1.60E-09 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01174 - - csv:101222794 518.464