Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01175 ATGGCGAAAGAGAAGCCACTCCCTGGTTTGGGACTTTCAGAATCAAAAGCGTGGTTCTTTTTCTTCCTCCTATTTAATCCACCAAGACCCATCTCCCAAATTCATCCACGTACTCCCCTGTTTTCATCTCTTCAGTTTCTTCTTCTCTCTCAAAGAATCTCCCCCCAAATTCCTCAATTCCCCCAATCCCCGTTTCTTTTCTCATCATTTTCCATGGCGGGTAATGGCGTTTTTGCAGAGATTCTCGACGGGGAAGTTTACAAATACTATTCCGAAGGTGAGTGGAAGAAATCCTCCTCCGGGAAGAGCGTCGCCATTATCAACCCCACTACGAGGAAGACGCAGTACAGAGTTCAAGCTTGTAACCAAGAGGAGGTTAATCAAGTGATGGAAATTGCCAAAACTGCTCAGAAATCATGGGCTAAGACTCCATTGTGGAAGAGAGCTGAGCTTCTTCATAAAGCAGCTGCAATTTTGAAAGAACATAAAGCACCCATTGCTGAGTGTTTGGTGAAGGAAATTGCAAAACCAGCTAAAGATGCAGTGACTGAGGTTGTGAGGTCTGGGGATCTTGTTTCATATTGTGCTGAAGAAGGTGTTAGGCTCTTGGGAGAAGGGAAGTTCTTGGTTTCTGATAGTTTTCCTGGAAATGAAAGGACCAAATATTGCCTTACTTCCAAGATCCCACTTGGTGTGATCTTAGCCATTCCTCCATTTAACTATCCTGTCAATCTGGCTGTCTCGAAAATTGCACCGGCTTTGATTGCTGGAAATTCGATCGTCCTCAAGCCTCCAACTCAGGGTGCTGTTTCCGCTCTTCATATGGTGCATTGCTTCCATCTTGCTGGTTTTCCTAAAGGCCTGATTAGTTGTGTCACTGGTAAAGGTTCTGAGATTGGTGATTTCCTCACGATGCATCCTGGTGTAGACTGTATAAGCTTTACTGGTGGAGATACTGGTATTGCGATTTCAAAGAAGGCAGGCATGATACCTCTTCAAATGGAACTGGGAGGCAAAGACGCCTGCATCGTTCTCGAGGATGCAGATCTCGATTTAGTCGCTGCAAACATCATAAAGGGAGGCTTTTCTTACAGTGGCCAAAGGTGCACTGCCGTCAAGGTTGTTTTGGTAATGGAGTCCGTAGCAGATGCTTTGGTTGAGAAAGTAAATGCTCGGGTGGCTAAACTAACTGTCGGTGCCCCGGAAGACGACTCAGACATTACTCCTGTCGTGACCGAGTCGTCGGCAAATTTCATCGAAGGGTTGGTAATGGATGCAAAGGAAAAGGGAGCAACATTTTGCCAAGAGTACAGAAGAGAAGGCAACCTGATATGGCCCTTGTTGTTAGATAATATTAGGCCTGATATGAGGATTGCATGGGAAGAACCCTTTGGACCAGTTTTACCAGTCATAAGAATCAGCTCCATTGAAGAAGGAATCCACCATTGCAATGCTAGCAACTTCGGACTTCAGGGATGTGTCTTCACAAAAGACATCAACAAGGCGATATTGATAAGCGACGCAATGGAAACCGGGACAGTTCAAATCAACTCTGCCCCCGCTCGAGGACCCGATCATTTCCCATTCCAGGGAATCAAGGACAGTGGAATTGGCTCTCAAGGAGTGACCAACAGCATCAACATGATGACCAAAGTGAAGACCACAGTGATCAACTTGCCAACGCCTTCCTACACCATGGGTTAG 1704 45.89 MAKEKPLPGLGLSESKAWFFFFLLFNPPRPISQIHPRTPLFSSLQFLLLSQRISPQIPQFPQSPFLFSSFSMAGNGVFAEILDGEVYKYYSEGEWKKSSSGKSVAIINPTTRKTQYRVQACNQEEVNQVMEIAKTAQKSWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRLLGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVSALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVDCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVNARVAKLTVGAPEDDSDITPVVTESSANFIEGLVMDAKEKGATFCQEYRREGNLIWPLLLDNIRPDMRIAWEEPFGPVLPVIRISSIEEGIHHCNASNFGLQGCVFTKDINKAILISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGVTNSINMMTKVKTTVINLPTPSYTMG 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10631579 10635898 - CmoCh12G011750.1 Cmo12g01175 393863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01175 567 CDD ALDH_F11_NP-GAPDH 86 558 - -
Cmo12g01175 567 PANTHER NADP-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 72 567 - -
Cmo12g01175 567 Pfam Aldehyde dehydrogenase family 95 554 IPR015590 GO:0016491
Cmo12g01175 567 SUPERFAMILY ALDH-like 85 558 IPR016161 GO:0016491
Cmo12g01175 567 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 362 373 IPR016160 GO:0016491
Cmo12g01175 567 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 338 528 IPR016163 GO:0016620
Cmo12g01175 567 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 334 341 IPR029510 GO:0016491
Cmo12g01175 567 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 93 554 IPR016162 GO:0016491
Cmo12g01175 567 PANTHER ALDEHYDE DEHYDROGENASE 72 567 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01175 Cmo-Chr12:10631579 Cmo11g00105 Cmo-Chr11:548605 1.19E-57 dispersed
Cmo05g01265 Cmo-Chr5:9821130 Cmo12g01175 Cmo-Chr12:10631579 8.71E-72 transposed
Cmo12g01175 Cmo-Chr12:10631579 Cmo05g01264 Cmo-Chr5:9819182 1.11E-51 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01175 K00131 - csv:101208699 955.281