Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo12g01184 | ATGTGTGTGACGGATTCCGAGCCGGTTGGGGCTGAGAGGGCGCCTTCTGGGAGTACTAATACCAAGCCATGGCGCATGCATTGTGAGTTTTTGGAGACCCAGATGGGGAATCCTGATCAGGAGCTTGATCTTGGTGGAACTAGCGACCTAACCCGTTCTGGGAATTCTTTTCCTCTCGAGAGCATTTCCGAGGACGCTGCAGTGGTAGACAGGAAAGAGAGCCCATCGACTTTTGTTCCTGCGCTTAGATCGGGAGAATGGTCTGATATCGGAAAGCGTCCATATATGGAGGACACTCATGTATGCATTCAGGACATGGCTAAGAAGTTCGGGTGCAGTTTTGTCAACGAGGAAGCGGTCTCCTTCTATGGTGTATTCGATGGTCACGGAGGAAAAGGCGCTGCACAATTCGTTCGTGATCACTTACCAAGAGTCATCATCGAAGATTCCGACTTTCCTTTAGCGCTTGAAAAAGTGGTCACGAGGTCGTTTATGGAGACGGATGCAGCTTTCGCTAGATCTTGCACTCTCGAAACATCTCTATCTTCAGGCACAACTGCACTGACTGCAATGATATTCGGAAGATCTTTGCTTGTAGCAAACGCTGGCGATTGCCGAGCAGTGTTATCAAGACAAGGATGCGCAATAGAAATGTCTAAAGACCACAGACCATGCTGCACAAAAGAACGCATGAGAATCGAGGCCTTAGGCGGATTCATCGACGACGATTACCTAAACGGACTACTTGGGGTCACTCGTGCGTTAGGAGACTGGCATCTTGAAGGAATGAAGGAAATGAGCGAGAGAGGTGGACCATTAAGTGCCGAACCCGAACTTAAACTAATAACATTGACGAAGGAGGAGGAGTTTTTGATCATAGGGAGCGACGGAATATGGGACGTGTTCACGAGTCAAAACGCTATCGACTTTGCTCGTCGGAGGCTCCAAGAACACAACGACGTGAAGCTTTGCTGCAAGGAAATAGTAGAAGAAGCCATAAAGAGAGGAGCCACGGACAACTTAACAGTGGTGTTGGTTAGCTTTCATTTGGAGCCACCTGAGCCTGTGGTGTTTCAGAGGCCAAGATTTAGACGAAGCATTTCAGCTGAAGGGCTTCAGAACCTGAAATTTCTGCTAGAGGGATAG | 1146 | 48.6 | MCVTDSEPVGAERAPSGSTNTKPWRMHCEFLETQMGNPDQELDLGGTSDLTRSGNSFPLESISEDAAVVDRKESPSTFVPALRSGEWSDIGKRPYMEDTHVCIQDMAKKFGCSFVNEEAVSFYGVFDGHGGKGAAQFVRDHLPRVIIEDSDFPLALEKVVTRSFMETDAAFARSCTLETSLSSGTTALTAMIFGRSLLVANAGDCRAVLSRQGCAIEMSKDHRPCCTKERMRIEALGGFIDDDYLNGLLGVTRALGDWHLEGMKEMSERGGPLSAEPELKLITLTKEEEFLIIGSDGIWDVFTSQNAIDFARRRLQEHNDVKLCCKEIVEEAIKRGATDNLTVVLVSFHLEPPEPVVFQRPRFRRSISAEGLQNLKFLLEG | 381 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 10699434 | 10704235 | + | CmoCh12G011840.1 | Cmo12g01184 | 393872 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo12g01184 | 381 | PANTHER | PROTEIN PHOSPHATASE 2C | 1 | 369 | IPR015655 | GO:0004722|GO:0006470 | |
Cmo12g01184 | 381 | ProSiteProfiles | PPM-type phosphatase domain profile. | 83 | 348 | IPR001932 | - | |
Cmo12g01184 | 381 | SMART | PP2C_4 | 73 | 346 | IPR001932 | - | |
Cmo12g01184 | 381 | PANTHER | PROTEIN PHOSPHATASE 2C 27-RELATED | 1 | 369 | - | - | |
Cmo12g01184 | 381 | ProSitePatterns | PPM-type phosphatase domain signature. | 122 | 130 | IPR000222 | GO:0043169 | |
Cmo12g01184 | 381 | Pfam | Protein phosphatase 2C | 95 | 340 | IPR001932 | - | |
Cmo12g01184 | 381 | CDD | PP2Cc | 83 | 348 | IPR001932 | - | |
Cmo12g01184 | 381 | SUPERFAMILY | PP2C-like | 72 | 349 | IPR036457 | - | |
Cmo12g01184 | 381 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cmo12g01184 | 381 | Gene3D | - | 65 | 351 | IPR036457 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo09g00041 | Cmo-Chr9:173255 | Cmo12g01184 | Cmo-Chr12:10699434 | 2.11E-110 | dispersed | |
Cmo12g01184 | Cmo-Chr12:10699434 | Cmo17g00985 | Cmo-Chr17:8536861 | 8.94E-84 | dispersed | |
Cmo12g01184 | Cmo-Chr12:10699434 | Cmo05g01271 | Cmo-Chr5:9862224 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10778 | PF00481 | PP2C | 9.80E-67 | CL0238 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo12g01184 | K14803 | - | csv:101210349 | 678.707 |