Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01184 ATGTGTGTGACGGATTCCGAGCCGGTTGGGGCTGAGAGGGCGCCTTCTGGGAGTACTAATACCAAGCCATGGCGCATGCATTGTGAGTTTTTGGAGACCCAGATGGGGAATCCTGATCAGGAGCTTGATCTTGGTGGAACTAGCGACCTAACCCGTTCTGGGAATTCTTTTCCTCTCGAGAGCATTTCCGAGGACGCTGCAGTGGTAGACAGGAAAGAGAGCCCATCGACTTTTGTTCCTGCGCTTAGATCGGGAGAATGGTCTGATATCGGAAAGCGTCCATATATGGAGGACACTCATGTATGCATTCAGGACATGGCTAAGAAGTTCGGGTGCAGTTTTGTCAACGAGGAAGCGGTCTCCTTCTATGGTGTATTCGATGGTCACGGAGGAAAAGGCGCTGCACAATTCGTTCGTGATCACTTACCAAGAGTCATCATCGAAGATTCCGACTTTCCTTTAGCGCTTGAAAAAGTGGTCACGAGGTCGTTTATGGAGACGGATGCAGCTTTCGCTAGATCTTGCACTCTCGAAACATCTCTATCTTCAGGCACAACTGCACTGACTGCAATGATATTCGGAAGATCTTTGCTTGTAGCAAACGCTGGCGATTGCCGAGCAGTGTTATCAAGACAAGGATGCGCAATAGAAATGTCTAAAGACCACAGACCATGCTGCACAAAAGAACGCATGAGAATCGAGGCCTTAGGCGGATTCATCGACGACGATTACCTAAACGGACTACTTGGGGTCACTCGTGCGTTAGGAGACTGGCATCTTGAAGGAATGAAGGAAATGAGCGAGAGAGGTGGACCATTAAGTGCCGAACCCGAACTTAAACTAATAACATTGACGAAGGAGGAGGAGTTTTTGATCATAGGGAGCGACGGAATATGGGACGTGTTCACGAGTCAAAACGCTATCGACTTTGCTCGTCGGAGGCTCCAAGAACACAACGACGTGAAGCTTTGCTGCAAGGAAATAGTAGAAGAAGCCATAAAGAGAGGAGCCACGGACAACTTAACAGTGGTGTTGGTTAGCTTTCATTTGGAGCCACCTGAGCCTGTGGTGTTTCAGAGGCCAAGATTTAGACGAAGCATTTCAGCTGAAGGGCTTCAGAACCTGAAATTTCTGCTAGAGGGATAG 1146 48.6 MCVTDSEPVGAERAPSGSTNTKPWRMHCEFLETQMGNPDQELDLGGTSDLTRSGNSFPLESISEDAAVVDRKESPSTFVPALRSGEWSDIGKRPYMEDTHVCIQDMAKKFGCSFVNEEAVSFYGVFDGHGGKGAAQFVRDHLPRVIIEDSDFPLALEKVVTRSFMETDAAFARSCTLETSLSSGTTALTAMIFGRSLLVANAGDCRAVLSRQGCAIEMSKDHRPCCTKERMRIEALGGFIDDDYLNGLLGVTRALGDWHLEGMKEMSERGGPLSAEPELKLITLTKEEEFLIIGSDGIWDVFTSQNAIDFARRRLQEHNDVKLCCKEIVEEAIKRGATDNLTVVLVSFHLEPPEPVVFQRPRFRRSISAEGLQNLKFLLEG 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10699434 10704235 + CmoCh12G011840.1 Cmo12g01184 393872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01184 381 PANTHER PROTEIN PHOSPHATASE 2C 1 369 IPR015655 GO:0004722|GO:0006470
Cmo12g01184 381 ProSiteProfiles PPM-type phosphatase domain profile. 83 348 IPR001932 -
Cmo12g01184 381 SMART PP2C_4 73 346 IPR001932 -
Cmo12g01184 381 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 369 - -
Cmo12g01184 381 ProSitePatterns PPM-type phosphatase domain signature. 122 130 IPR000222 GO:0043169
Cmo12g01184 381 Pfam Protein phosphatase 2C 95 340 IPR001932 -
Cmo12g01184 381 CDD PP2Cc 83 348 IPR001932 -
Cmo12g01184 381 SUPERFAMILY PP2C-like 72 349 IPR036457 -
Cmo12g01184 381 MobiDBLite consensus disorder prediction 1 23 - -
Cmo12g01184 381 Gene3D - 65 351 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00041 Cmo-Chr9:173255 Cmo12g01184 Cmo-Chr12:10699434 2.11E-110 dispersed
Cmo12g01184 Cmo-Chr12:10699434 Cmo17g00985 Cmo-Chr17:8536861 8.94E-84 dispersed
Cmo12g01184 Cmo-Chr12:10699434 Cmo05g01271 Cmo-Chr5:9862224 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10778 PF00481 PP2C 9.80E-67 CL0238 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01184 K14803 - csv:101210349 678.707