Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01194 ATGGAGGTTTTTAGATACCTGTTCTTCAATGTTCTTGTGTTCTTCCTTCTTTGTGTAGCGGCATCCGCCACCGATCGTTACACCGAAGCACTTTTCACCTTGAAATCTGAATTTCTCGATGATTTTGGCAGTTTGAGCGATTGGATTATACCTTATAAACAAAACCCATCTGGGAAAATCCATGGCTGTTCTTGGTCAGGAATCAAATGCGACAAGAATTCCACCATTGTTATCGGAATCAACCTCTCGATGAAGAAGCTTGGTGGGGCGATTTCCGGTGAGCAGTTTCATGTTTTTAAAGAACTCGTTGATCTTAACCTAAGCCATAACTATTTTTCTGGGAAACTCCCAATTGGTATCTTCAATCTCACTAATCTAAGAAGCTTGGATATCAGTAGAAACAATTTTTCTGGTCATTTTCCTGTTGGGATATCTGTTCTTGAAAATTTGGTTGTTCTTGATGCTTTTAGCAATAGTTTTTCTGGGTCATTACCTGTTGATCTTCCTGAGCTTGAACATTTAAAGTTCCTCAACTTAGCTGGTAGCTACTTCAATGGATCAATCCCTTCAGAATATGGCTCTTTCAAAAGCCTTGAGTTCATCCATCTTGCAGGGAACTTCCTTACTGGAAACATACCCCCTGAATTGGGTAAGCTCAAAACAGTGACCCACATGGAAATTGGCTACAATAATTACCATGGAAGGCTCCCATGGGAGCTTGGCAACATGAGTAGCCTTCAATATCTAGACATTGCTGGTGGGTATCTATCTGGTTCAATTCCTAAAGAGCTTGGTAATCTAACAAAACTTGAATCTCTGTTCCTCTTTAGAAACCAGTTTTCTGGGTTCTTGCCTGATGAACTAAGCCAAATCTCTTCTCTGGTTAGCTTAGATCTCTCTGATAATCATATTTCTGGGCCAATTCCTGAAAGTTTCTCAGAGTTCAAGAATCTTAAACTGCTTAGTCTTATGTATAATGAAATGTCTGGCTCTGTTCCAATGGGTATTGCAGAGCTTCCTTCATTGGAGACTCTTTTTATATGGAACAATCAGTTCTCTGGGCCACTTCCAAGCAATTTGGGTAGCAATAGAAGGCTTAAATGGGTGGATGTGTCCACAAACAAGTTTGTGGGTGATATCCCTGTTGATATCTGTTTAGGAGGTGTTCTTTTTAAGTTGATACTCTTTTCAAATAAGTTTAGTGGTGGCGTTTCCCCTTCTCTTTCGAATTGTTCGTCGCTCGTTCGATTGCGGTTAGAGGATAACTCGTTTTCGGGTGATATCTCTCTGAAATTTAGTCGTCTTCCTCGTATCTCATACGTCGATCTCTCTCGGAACAAGTTTAGTGGAGGGATTCCTTTAGATATAAGCAAAGGATTCGACCTTCAATACGTTAATATCTCTCATAACCCAGAGCTTGGAGGTGTTGTTCCTACAGAGATATGGACATTACCTCTTCTTCAAAACTTTTCAGCTTCTGATTGTGGCATAAGAGGAAGCCTTCCTAAGTTTCATCTCTGTAAATCCATTTCTACTATTGAATTGAGTGATAATAATCTATCTGGAGATGTCCCGGAAAGCGTTGTAAGTTGCCAGGCTCTTGTGCGGATGGATTTGTCGTTCAACAATCTCTCGGGTCGTATACCGGAAGAACTTGCACGTCTTCCTTCTATTAGCATCATTGATCTATCCCATAATGGTTTCAATGGATCGATACCTGATAAGTTCCGGGATTCGTTGAGCTTGGTTCTACTAAATGTCTCTTCTAATGATATCTCTGGTTCCATCCCGGAAAACGACGTGTTTCGGTTAATGGGAAGGAGTGCATTTGCTGGAAATCCTAAGCTGTGTGGAGCACCTTTGAGGCCATGTTCGGGTTCATTGGCAATGTTGGGAAGTAAAGGGACGGGGAAGCTTATACTCGTCCTGATACTATGTGCAGGTCTTGCTATAATCACGACGATATCGATTGCATGGATTTTCATCTTTCGACGACGAAGCAAAGGAAAATGGAAGATGGTGTCGTTCTCTGGACTTCCTCCATTCACAGCTAATGATATTCTTAGAAGCTTTGACGCTACGGAGTCGAAGGAAGCGATATTGCCATTGTCTGCTTCGATATTCAAAGCAGTTCTGCCGACTGGGATCACGGTGTCGATAAAGAAGATAGACTGGGAAGCGAAACGAATGAGGACGATGTCGGATTTCATAACTCGATTAGGTAGTACGAGGCACGAGAATCTGGTTAGATTGCTCGGATTCTGCTACAACAAACAGATGGTTTATCTTTTATATGATTACTTTCCCAATGGAAATCTAGCAGAGAAAATTGCTATCACAAGGGAATGGTCAACTAAGCTCAATCTAGTAATAGCTATAGCAAGAGGACTACACTTTCTTCACCATGACTGTTATCCTGCAATCCCACATGGAGACTTGAGGTCGAGTAACGTCATATTCGACGAAAATATGGAACCCCATCTAGCGGAATTCGGGCTCCGGTTTCTACAACAGATTAACGAAGGTGAATTCAATAGTGCAACGGAGGAGGAGCTGTGGATGGATGTTCGTAGTTTCGGGGAGATCGTCCTGGAAATTCTAAGCAACGGTCGGTTGACAACCGCGGGATCGAGCACACAGAACAAGGCGAGTGATCTTCTGTTAAGAGAAATATACAAAGAAAATGGGATTAGCTGTGCAGATTCATCACAGGAAGAGATAAGGCAGGTGCTTGGTGTAGCTTTGCAATGCAGTAGGAGCAGGCCATCCAACAGGCCATCCATGGAAGATGTGTTGAAGCTGTTATCAGATATAAAACCACAGAGGAAAAACCCTGATCTACACCCAGAGATGTCGGGCTGGGATGAAGGAGGAATCTACTACAGCGATCAAGCGCAGTCCCTCGGCGACGGAACTGGCTTCGGCCGCAGCGGAGTTGTCGACGAGAAGGCCACTCATCACTCGGTTCTTCGCAAATTCAAGGAGTTCATCCGTGGATTTGAAGTGGAAAAGAATGTTTTCCCCTACAGAGAAAGCCTTCTCCACAACCCGAAATTTCTTCGCGTTGATATGGAGGACGTTCACGCTTTTGACTCCGATCTTCCGGCCAAGCTTCGATCTGCCCCTGCCGATTTCTTGCCATTGTTTGAGACTGCTGCAGCGGAGGTTTTAATGAATCTGAAGACGAAGGTGGCTGGTGAAACTGGAGAAATGGTGGAGCCCGTGCCTGGGGATGTTCAAATTCTGCTAACGTCGAAGGAGGATCCTGTCTCGATGCGGTCACTTGGGGCTCAATACATTTCAAAACTTATTAAAATATCTGGAATCACTATAGCTGCGTCAAGGACCAAGGCAAAGGCAACGTATGTGACCTTATTGTGCAAAAACTGTAGAAGTACATTAAGAGTTCCGTGTCGGCCAGGACTTGGAGGGGCAATTGTCCCTCGATCATGTAACCATATGCCCCAGGCCGGAGAAGAACCATGCCCACTAGATCCTTGGATTGTGGTTCCTGATAAGAGCATGTATGTTGATCAACAGACTTTAAAACTGCAGGAAAACCCAGAAGATGTCCCAACTGGGGAACTTCCTAGGAACATGCTTCTATCAGTAGATCGACATCTTGTTCAAACAATTGTTCCAGGCACTAGATTGACCATCATGGGGATATACAGTATCTTTCAAGCTGCCAATTCTGCCGCATCCCACAAAGGAGCAGTTGCAATCAGGCAGCCTTATATCAGGGTTGTAGGCATTGAAGAAACTAATGAAGCTAACTCTCGTGGCCCTGCATCTTTCACAACAGAAGATATAGAAGAGTTCAAAAAATTTGCAGCAGAGCCTGATGTCTATAAAGCCATTTGTTCAAAGATTGCCCCCTCTATATTTGGTCATGAAGATGTGAAGAAGGCAGTGGCTTGTCTTCTATTTGGAGGATCTAGGAAGAATTTGCCTGATGGGGTTAAGTTAAGAGGTGACATTAATGTATTACTCTTGGGGGACCCCTCTACAGCTAAATCCCAGTTTCTCAAGTTTGTTGAGAAGACAGCTCCAGTTGCTGTTTATACCTCTGGAAAAGGTTCATCGGCTGCTGGTCTTACAGCTTCAGTGATACGGGATAGCAGCTCCCGAGAGTTTTATCTTGAAGGAGGTGCAATGGTTTTGGCTGATGGAGGTGTTGTCTGCATTGATGAGTTTGACAAAATGAGATCAGAGGATAGAGTTGCTATTCATGAAGCCATGGAACAACAGACAATATCCATTGCCAAAGCAGGAATAACAACGGTTCTTAATTCCAGAACCTCAGTGCTTGCAGCTGCTAATCCTCCGTCAGGACGTTATGATGATCTTAAGACGGCACAGGATAACATTGATTTGCAAACGACAATTCTCTCCAGATTTGATTTAATTTTCATCGTAAAAGATATAAGGATGTACAGTCAAGATAAGATTATAGCAAGCCACATTATAAAAGTTCATGCATCTGCTGATGCCAATTTGGGTGAAAATAGAGCTTCTAAAGAAGAGAATTGGCTAAAGAGGTATCTTCAATATTGCCGATCTCATTGTCATCCCCGTTTGTCAGAATCTGCGTCCACAATGCTGCAGAATAATTATGTTAAAATCAGACAGGACATGAGACAACAAGCAAATGAAACAGGGGAAGCTGCTGCAATTCCGATCACAGTTAGGCAGCTGGAAGCTATAGTCAGGTTAAGCGAGGCACTTGCAAAAATGAAGTTGTCCCATGTTGCCACTGAAGAAAATGTGCAGGAAGCTATTAGACTTTTTACTGTGTCCACGATGGATGCAGCACGCTCTGGGATTCATCAGCAAGTAAATCTAACTCCTGAAATGGCTAATGAAATAAAGCAAGCAGAAACACAGATAAAGAGAAGAATAGGAATTGGCAACCACATATCTGAGAGAAGACTGATTGATGAGCTCACCAAAATGGGGATGAACGAGTCAATTGTGAGAAGAGCCCTGATTATTATGCACCAGAGAGATGAAGTTGAATATAAAAGAGAGAGGCGTGTCATTTTCCGCAAGGCATGA 5058 43.06 MEVFRYLFFNVLVFFLLCVAASATDRYTEALFTLKSEFLDDFGSLSDWIIPYKQNPSGKIHGCSWSGIKCDKNSTIVIGINLSMKKLGGAISGEQFHVFKELVDLNLSHNYFSGKLPIGIFNLTNLRSLDISRNNFSGHFPVGISVLENLVVLDAFSNSFSGSLPVDLPELEHLKFLNLAGSYFNGSIPSEYGSFKSLEFIHLAGNFLTGNIPPELGKLKTVTHMEIGYNNYHGRLPWELGNMSSLQYLDIAGGYLSGSIPKELGNLTKLESLFLFRNQFSGFLPDELSQISSLVSLDLSDNHISGPIPESFSEFKNLKLLSLMYNEMSGSVPMGIAELPSLETLFIWNNQFSGPLPSNLGSNRRLKWVDVSTNKFVGDIPVDICLGGVLFKLILFSNKFSGGVSPSLSNCSSLVRLRLEDNSFSGDISLKFSRLPRISYVDLSRNKFSGGIPLDISKGFDLQYVNISHNPELGGVVPTEIWTLPLLQNFSASDCGIRGSLPKFHLCKSISTIELSDNNLSGDVPESVVSCQALVRMDLSFNNLSGRIPEELARLPSISIIDLSHNGFNGSIPDKFRDSLSLVLLNVSSNDISGSIPENDVFRLMGRSAFAGNPKLCGAPLRPCSGSLAMLGSKGTGKLILVLILCAGLAIITTISIAWIFIFRRRSKGKWKMVSFSGLPPFTANDILRSFDATESKEAILPLSASIFKAVLPTGITVSIKKIDWEAKRMRTMSDFITRLGSTRHENLVRLLGFCYNKQMVYLLYDYFPNGNLAEKIAITREWSTKLNLVIAIARGLHFLHHDCYPAIPHGDLRSSNVIFDENMEPHLAEFGLRFLQQINEGEFNSATEEELWMDVRSFGEIVLEILSNGRLTTAGSSTQNKASDLLLREIYKENGISCADSSQEEIRQVLGVALQCSRSRPSNRPSMEDVLKLLSDIKPQRKNPDLHPEMSGWDEGGIYYSDQAQSLGDGTGFGRSGVVDEKATHHSVLRKFKEFIRGFEVEKNVFPYRESLLHNPKFLRVDMEDVHAFDSDLPAKLRSAPADFLPLFETAAAEVLMNLKTKVAGETGEMVEPVPGDVQILLTSKEDPVSMRSLGAQYISKLIKISGITIAASRTKAKATYVTLLCKNCRSTLRVPCRPGLGGAIVPRSCNHMPQAGEEPCPLDPWIVVPDKSMYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIMGIYSIFQAANSAASHKGAVAIRQPYIRVVGIEETNEANSRGPASFTTEDIEEFKKFAAEPDVYKAICSKIAPSIFGHEDVKKAVACLLFGGSRKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPVAVYTSGKGSSAAGLTASVIRDSSSREFYLEGGAMVLADGGVVCIDEFDKMRSEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDKIIASHIIKVHASADANLGENRASKEENWLKRYLQYCRSHCHPRLSESASTMLQNNYVKIRQDMRQQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSHVATEENVQEAIRLFTVSTMDAARSGIHQQVNLTPEMANEIKQAETQIKRRIGIGNHISERRLIDELTKMGMNESIVRRALIIMHQRDEVEYKRERRVIFRKA 1685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10756150 10766084 + CmoCh12G011940.1 Cmo12g01194 393882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01194 1685 Gene3D - 1264 1619 IPR027417 -
Cmo12g01194 1685 Gene3D - 1119 1177 - -
Cmo12g01194 1685 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
Cmo12g01194 1685 Gene3D Phosphorylase Kinase; domain 1 695 767 - -
Cmo12g01194 1685 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1293 1601 IPR027417 -
Cmo12g01194 1685 Pfam Protein tyrosine and serine/threonine kinase 714 934 IPR001245 GO:0004672|GO:0006468
Cmo12g01194 1685 ProSitePatterns MCM family signature. 1392 1400 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cmo12g01194 1685 CDD MCM5 1287 1600 - -
Cmo12g01194 1685 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 1119 1131 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cmo12g01194 1685 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 1243 1255 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cmo12g01194 1685 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 1093 1108 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cmo12g01194 1685 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 1519 1534 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cmo12g01194 1685 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 1595 1612 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cmo12g01194 1685 SUPERFAMILY Nucleic acid-binding proteins 992 1249 IPR012340 -
Cmo12g01194 1685 Pfam MCM AAA-lid domain 1511 1600 IPR041562 -
Cmo12g01194 1685 PANTHER UNNAMED PRODUCT 5 942 - -
Cmo12g01194 1685 Pfam MCM OB domain 1092 1227 IPR033762 -
Cmo12g01194 1685 SUPERFAMILY L domain-like 390 624 - -
Cmo12g01194 1685 SMART mcm 1088 1602 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cmo12g01194 1685 Gene3D Ribonuclease Inhibitor 25 181 IPR032675 -
Cmo12g01194 1685 Gene3D Ribonuclease Inhibitor 389 627 IPR032675 -
Cmo12g01194 1685 SMART LRR_typ_2 339 363 IPR003591 -
Cmo12g01194 1685 SMART LRR_typ_2 555 578 IPR003591 -
Cmo12g01194 1685 SMART LRR_typ_2 123 147 IPR003591 -
Cmo12g01194 1685 SMART LRR_typ_2 195 219 IPR003591 -
Cmo12g01194 1685 SMART LRR_typ_2 267 290 IPR003591 -
Cmo12g01194 1685 SMART LRR_typ_2 291 314 IPR003591 -
Cmo12g01194 1685 Pfam Leucine rich repeat 293 352 IPR001611 GO:0005515
Cmo12g01194 1685 Pfam Leucine rich repeat 510 567 IPR001611 GO:0005515
Cmo12g01194 1685 Gene3D - 980 1072 - -
Cmo12g01194 1685 SUPERFAMILY L domain-like 57 381 - -
Cmo12g01194 1685 Pfam MCM N-terminal domain 991 1062 IPR027925 -
Cmo12g01194 1685 SUPERFAMILY Protein kinase-like (PK-like) 706 938 IPR011009 -
Cmo12g01194 1685 Gene3D Ribonuclease Inhibitor 182 282 IPR032675 -
Cmo12g01194 1685 Gene3D Ribonuclease Inhibitor 283 388 IPR032675 -
Cmo12g01194 1685 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE 5 942 - -
Cmo12g01194 1685 PRINTS Mini-chromosome maintenance (MCM) protein family signature 1324 1339 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo12g01194 1685 PRINTS Mini-chromosome maintenance (MCM) protein family signature 1384 1398 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo12g01194 1685 PRINTS Mini-chromosome maintenance (MCM) protein family signature 1412 1425 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo12g01194 1685 PRINTS Mini-chromosome maintenance (MCM) protein family signature 1436 1448 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo12g01194 1685 PRINTS Mini-chromosome maintenance (MCM) protein family signature 1463 1471 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo12g01194 1685 ProSiteProfiles MCM family domain profile. 1283 1489 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo12g01194 1685 Gene3D - 1092 1227 IPR012340 -
Cmo12g01194 1685 ProSiteProfiles Protein kinase domain profile. 676 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01194 1685 ProSitePatterns Tyrosine protein kinases specific active-site signature. 808 820 IPR008266 GO:0004672|GO:0006468
Cmo12g01194 1685 Pfam MCM P-loop domain 1270 1493 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo12g01194 1685 Gene3D Transferase(Phosphotransferase) domain 1 768 951 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01740 Cmo-Chr6:11928395 Cmo12g01194 Cmo-Chr12:10756150 5.94E-97 dispersed
Cmo12g01194 Cmo-Chr12:10756150 Cmo16g00218 Cmo-Chr16:963327 0 dispersed
Cmo14g01078 Cmo-Chr14:6029195 Cmo12g01194 Cmo-Chr12:10756150 3.08E-99 dispersed
Cmo12g01194 Cmo-Chr12:10756150 Cmo05g01278 Cmo-Chr5:9916542 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74745 PF00493 MCM 6.50E-101 CL0023 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01194 K02209 - cmax:111465424 1770.75