Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01195 ATGGTATCAAAATCCTTCATTAGTGCTCTCTTGTTCTTCACGTTCTTTCAAGCTTCCAAAGCTCAGCCATGGATCAAAGCTGGGTATTGGCTATCAGCAGCTGGTTCCCCTTCATCCGACATAAACTCACCTCTGTTCACTCATCTTTTCTGTGGGTTTGCAGAGCTCATAAACTCCACTTCTTATGAGCTTCATTTTTCATCCTCTGAGCTTCAAAGTTTCTCAAACTTCACAGCAATTGTCAAGCAAAAAAACCCTTCTCTGTCAACTCTTCTCTCCATTGGCGGCGGAAATGCAGATTATCATGTTCTATCCTCAATGGTTAGCAATTTCACTCATAGAAAGGCCTTCATTGATTCCACCATTGAACTTGCAAGAACCCATGATTTTGATGGGCTTGATTTTTGTTGGGTTTCATCCAACACGACATCCGACATGTCCAACATGGGGAAACTCTTTGAAGAATGGCGACAAGCAGCTGAAACAGAGGCTAAAAGCTCAAAAAGGCTAATGCTTATTTTGACAGCAGCTGTTCAACGCACTCCAGATTTGGAATTTGGGTCATATCCTGTTGATTCCATAAGAAATAACTTGAACTGGGTTAATTTTTTGGGTTATGATTATTACATGCCAAGTTTTTGGCCAAATTTTACAGCTCCTTTTGCAGCTTTGTATGATCCATTATTGAATAAAACAAACACAGACAGTGGAATTAGTGAGTGGATTGCAAAGGGATTGCCTGCTGCTAATATTGTTTTGGCTTTGCCCTTTTATGGCTATGCTTGGACACTTAAAAATGTTGAGGATTTTGGTGTTGGAGCAGCAGCCATTGGGCCAGCCATTTCTGCTGATGGGTCGATTACATACAAGGATATAAAGGATTATATGAGGAGCAACAGGGTTGATAATGTGGAGTTTAATGGTAGCTATGTGATGAGTTTTTGTGTGGTTGGATCTACTTGGATTGGGTTTGATGATGCTAAGGTTGTTAAAATTAAGGTTAATTATGTCAAACAAAGGAGGTTGCGTGGTTACTTTGTTTGGTTGGTGTCTAATGATGACAATTGGGAGCTCTCTTCTATTGCAGCTAGCGAGTTTGGAAATGAGAAAGAAAACAAAGTATCTTTGTTGATAGTTGTCCCAACCACAATTGGTGGTGCCATTGTTCTTCTCTTACTAGGGTTCTTGTTGTTTAGAAGACTCAAATCCAACAAATCCAAAGATGCTGGAAGAAGATCAAAATTCAATATAAAAAATCTTGTTGGAGGAGAAGATTTGAAGAACAGTGCTCCTGATTTGCAAGTGTTTAGCTATGCTGAGATTGAGAGAGCTACCAACAAATTTGCTTTCAAGAATAAACTTGGACAAGGTGGCTATGGCCCTGTTTATAAGGGAGTATTAGGAAATGGACAGGAGATAGCAGTGAAAAGACTGTCAGCAACTTCAGGACAAGGTTTTGAAGAGTTCAAGAATGAAGTTTTGCTCACTGCAAGACTACAACATGTCAACCTTGTGAAAGTTGTTGGATTCTGTGTTGACACTCAAGAACATATGTTGATTTATGAGTACATGCCTAACAAAAGCCTCGATTTCCATCTCTTCGGCCATGGAAGAGAAAATTTGTTGAATTGGGCAAAAAGAGTAGAGATCATTGAAGGGGTAACTCAAGGACTTCTTTACCTGCAAGAATACTCAAGATTGACAATAATTCATAGGGACTTAAAGCCGAGTAATATTTTGTTGGACGATGGCATGAAGCCGAAAATTTCAGATTTTGGCATGGCTAGAATCTTCGCGAAAGAAAAACTTGAAGCAAACACGAGCCGGATTGCGGGAACATACGGCTATATTCCCCCTGAATATGCGAAGCAAGGAGTTTATTCTACGAAATCAGACGTATTTAGTTTTGGAGTTCTTCTTCTTCAAATCATAAGTGGGAAGAGGACTACCGAGCTAAATGGGGAGCACGAACGTTTGGGTCTTCTAGATTACGCATATGAGGCTTGGAAAGAGGGCAGAGGAATGGAGTTTATGGATCAATCACTTGATGATTCTGAGTCAACTTGCAAACTAACAAGATGCATACAGATAGCTTTGCTTTGTGTTCAAGAAAATGCAGATGATAGGCCAACCATGTTGGAAATCTCTTCAATGCTTAAGAGTTCAACTTCAGAGCTTAAAGATCCACAAAGGCCTGCTTTCTCTGTCAAAAAAGTCCGTGATGAAACCGATCGTAGCCTTACGACCGATCGACAAACTTACTCTGTTTCTAGTGAAATAGTTACGGAAGTTGTAGCTCGATGA 2304 40.06 MVSKSFISALLFFTFFQASKAQPWIKAGYWLSAAGSPSSDINSPLFTHLFCGFAELINSTSYELHFSSSELQSFSNFTAIVKQKNPSLSTLLSIGGGNADYHVLSSMVSNFTHRKAFIDSTIELARTHDFDGLDFCWVSSNTTSDMSNMGKLFEEWRQAAETEAKSSKRLMLILTAAVQRTPDLEFGSYPVDSIRNNLNWVNFLGYDYYMPSFWPNFTAPFAALYDPLLNKTNTDSGISEWIAKGLPAANIVLALPFYGYAWTLKNVEDFGVGAAAIGPAISADGSITYKDIKDYMRSNRVDNVEFNGSYVMSFCVVGSTWIGFDDAKVVKIKVNYVKQRRLRGYFVWLVSNDDNWELSSIAASEFGNEKENKVSLLIVVPTTIGGAIVLLLLGFLLFRRLKSNKSKDAGRRSKFNIKNLVGGEDLKNSAPDLQVFSYAEIERATNKFAFKNKLGQGGYGPVYKGVLGNGQEIAVKRLSATSGQGFEEFKNEVLLTARLQHVNLVKVVGFCVDTQEHMLIYEYMPNKSLDFHLFGHGRENLLNWAKRVEIIEGVTQGLLYLQEYSRLTIIHRDLKPSNILLDDGMKPKISDFGMARIFAKEKLEANTSRIAGTYGYIPPEYAKQGVYSTKSDVFSFGVLLLQIISGKRTTELNGEHERLGLLDYAYEAWKEGRGMEFMDQSLDDSESTCKLTRCIQIALLCVQENADDRPTMLEISSMLKSSTSELKDPQRPAFSVKKVRDETDRSLTTDRQTYSVSSEIVTEVVAR 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10766717 10773636 - CmoCh12G011950.1 Cmo12g01195 393883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01195 767 Pfam Glycosyl hydrolases family 18 27 353 IPR001223 GO:0005975
Cmo12g01195 767 SMART 2g34 24 353 IPR011583 GO:0008061
Cmo12g01195 767 MobiDBLite consensus disorder prediction 721 750 - -
Cmo12g01195 767 SMART serkin_6 448 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01195 767 SUPERFAMILY Chitinase insertion domain 258 324 IPR029070 -
Cmo12g01195 767 CDD STKc_IRAK 454 720 - -
Cmo12g01195 767 Gene3D Glycosidases 39 355 - -
Cmo12g01195 767 CDD GH18_plant_chitinase_class_V 22 359 - -
Cmo12g01195 767 Gene3D Phosphorylase Kinase; domain 1 423 523 - -
Cmo12g01195 767 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 18 757 - -
Cmo12g01195 767 Pfam Protein tyrosine and serine/threonine kinase 450 719 IPR001245 GO:0004672|GO:0006468
Cmo12g01195 767 SUPERFAMILY Protein kinase-like (PK-like) 430 744 IPR011009 -
Cmo12g01195 767 ProSitePatterns Serine/Threonine protein kinases active-site signature. 569 581 IPR008271 GO:0004672|GO:0006468
Cmo12g01195 767 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 24 369 IPR001223 GO:0005975
Cmo12g01195 767 Gene3D Transferase(Phosphotransferase) domain 1 524 742 - -
Cmo12g01195 767 ProSiteProfiles Protein kinase domain profile. 448 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01195 767 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 19 18 757 - -
Cmo12g01195 767 SUPERFAMILY (Trans)glycosidases 25 371 IPR017853 -
Cmo12g01195 767 Gene3D - 257 324 IPR029070 -
Cmo12g01195 767 MobiDBLite consensus disorder prediction 731 748 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00480 Cmo-Chr11:2343936 Cmo12g01195 Cmo-Chr12:10766717 1.04E-58 dispersed
Cmo12g01195 Cmo-Chr12:10766717 Cmo13g00716 Cmo-Chr13:7210209 5.97E-114 dispersed
Cmo11g00479 Cmo-Chr11:2341402 Cmo12g01195 Cmo-Chr12:10766717 6.97E-86 wgd
Cmo12g01195 Cmo-Chr12:10766717 Cmo05g01279 Cmo-Chr5:9921979 2.89E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74746 PF00704 Glyco_hydro_18 1.90E-63 CL0058 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01195 - - cmax:111465441 1484.16