Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01197 ATGGAAGCAAAGAAGAAAAGGAAAAACGAATTTTGGGTTTCACATAGACCCAGAAGAGGGGGAAGAAGAAGAAGAAGAAGAAAGAAGAACAGAGTGTGGAGTTTCAGGTTCACTATGACTGTGGAGGATCGAAGAGCTAATTTGGTGGGTGAAAATGGGGTTATGGATCAGTTTCCTATTGGTATGCGTGTTCTTGCTGTGGATGATGACCCCATTTGCCTTAAGGTTTTGGAGAATTTGCTTCGTAAATGTCAATATCATGTTACAACGACGAATCAGGCGATTCAGGCACTTAAAATGTTGAGGGAAAATAGAAACAAGTTTGATTTGGTTATCAGTGATGTGAACATGCCAGACATGGATGGTTTTAAGCTTCTCGAGCTCGTAGGCCTTGAAATGGACCTACCCGTTATCATGCTGTCTGCGCATAGCGATACCGAGCTTGTAAAGAAGGGAGTTTTTCACGGTGCTTGTGATTATTTGCTGAAACCCGTTCGAATTGAGGAGCTGAAGAATATATGGCAACACGTCCTCCGAAGAAAGACTTCCTCAGCTAAGAACCAAAACGAATGCACTAATGGAAATGACACTTTATGTCAAACTGTTGAAGTTGTAAAAGGTTTCCCGTCTGCGGCGAGTGCTGATAACGGGAAACCTGGTAAAAGGCGGAAAGACGACGATGACGATGAGGAAGGAGGTGAAGAAGAGAGCGCATACGAGACCGACGACTCCTCCTCCCAAAAAAAGCAAAGGGTAGTTTGGTTCGGCGAGCTGCATAGGAAGTTTATTGCAGCTGTTAATCATTTGGGCTATGAAAAGGCCGTTCCTAAAAAGATCCTCGATCTAATGAACGTCGAAGGACTCACAAGAGAAAACGTCGCTAGCCATCTTCAGAAATACAGGCAGTACCTTAAAAAAATGTGTACTAAGGAAGCTCAGCAATGTAATATGATGGCTGCATTTGGAGGTAAAGACACCTCCTTCAGGCCCATGGCTTCACTCAATGGATTTTCAATGACGGGAACGGGAAGGCTCTCGAACGCTACATTCTCGTCGTATCCCTCTCGAGGAATCGTTGGTAGATTAAACTCTACTGCTGGATTGAGCTTACACGGTATCGCTTCCTCGGGAATGATCCAACAGGGTGCTTCCCATAACTTGAGTAGCTCATTGAATATACTCGGGAAACCCCATCCGACTCTCTTGCTTTCAAACCGACCGCCGAGTATATTCAACAGTATTTCGACGCCATCGGATCACATCCAGTCGCATTGGGACAAACACAACGCACCATTTAAAGAGTCAAATTTGATAAATGATGTCTCGAGTTTTACAGTTTCCACGAGCTTCCCTGATGCTAGAGTAGCTGTTGGTTGCTCGAGTAATTATGACTTTGGCGTTTCGAGTCATTCGTTGATGTTACAAGGACATAAGCAACAGAGTCATGGCAGCGGAGAGTTTCGAGATCAGTCTTGTTTTAAGGTATCTCCAATCAACCCGGAACCCGTAGGCTGCAGCACAGGCGTTTCTAATATTTTGGGCGGTCATGGTCAATCGAACAAAAACTGGCAGGGTGTCTCGCTCACTGGAACTTACCCTTCTGATGGAATGCCTGCGATTAATTTGACGATTTCTTCGGCTCAGCCCGATAACGAAAACTTTCCTGTTGGTTTTCCTTCGACTAGCGTGGACTCGAGTTCTCAGCTTGATTTACGAGGGGAGACGCAATGCTACGACGAACTAATGGATCGGGTTGTCGATGCCATGAATGACAGATCAAAGCAACAATGGGAAACAGCTAAACAGAATTACTACGGCAACCATAGTTCTATATTGAGAAACTCTCTTGTTTCTGGGAATAGTGTTGCAGATCCCTTGGACCCGAGTTCAGCAGATCCGAACAATGCGATCTGTCTCGAAAACATCGGTAGCTCTTTGACTAACCAGTTGAATAACGACGCTCCCGCCTTCATTCAGCAAGACGCAGAAACGTTGATGATGGAGACTTGGATGAACTTCGACGGAAAAAGTCTCATGGATCCAACAAAGCTACACTATAGTTTTAGTTCCCTGGATGAGTAG 2082 44.91 MEAKKKRKNEFWVSHRPRRGGRRRRRRKKNRVWSFRFTMTVEDRRANLVGENGVMDQFPIGMRVLAVDDDPICLKVLENLLRKCQYHVTTTNQAIQALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVKKGVFHGACDYLLKPVRIEELKNIWQHVLRRKTSSAKNQNECTNGNDTLCQTVEVVKGFPSAASADNGKPGKRRKDDDDDEEGGEEESAYETDDSSSQKKQRVVWFGELHRKFIAAVNHLGYEKAVPKKILDLMNVEGLTRENVASHLQKYRQYLKKMCTKEAQQCNMMAAFGGKDTSFRPMASLNGFSMTGTGRLSNATFSSYPSRGIVGRLNSTAGLSLHGIASSGMIQQGASHNLSSSLNILGKPHPTLLLSNRPPSIFNSISTPSDHIQSHWDKHNAPFKESNLINDVSSFTVSTSFPDARVAVGCSSNYDFGVSSHSLMLQGHKQQSHGSGEFRDQSCFKVSPINPEPVGCSTGVSNILGGHGQSNKNWQGVSLTGTYPSDGMPAINLTISSAQPDNENFPVGFPSTSVDSSSQLDLRGETQCYDELMDRVVDAMNDRSKQQWETAKQNYYGNHSSILRNSLVSGNSVADPLDPSSADPNNAICLENIGSSLTNQLNNDAPAFIQQDAETLMMETWMNFDGKSLMDPTKLHYSFSSLDE 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10782304 10786491 + CmoCh12G011970.1 Cmo12g01197 393885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01197 693 PANTHER TWO-COMPONENT RESPONSE REGULATOR 39 692 - -
Cmo12g01197 693 SMART REC_2 62 174 IPR001789 GO:0000160
Cmo12g01197 693 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 249 302 IPR006447 GO:0003677
Cmo12g01197 693 Pfam Response regulator receiver domain 64 172 IPR001789 GO:0000160
Cmo12g01197 693 MobiDBLite consensus disorder prediction 10 27 - -
Cmo12g01197 693 CDD REC_typeB_ARR-like 64 178 - -
Cmo12g01197 693 Gene3D - 245 308 - -
Cmo12g01197 693 SUPERFAMILY CheY-like 61 188 IPR011006 -
Cmo12g01197 693 PANTHER TWO-COMPONENT RESPONSE REGULATOR 39 692 IPR045279 GO:0009736
Cmo12g01197 693 SUPERFAMILY Homeodomain-like 247 307 IPR009057 -
Cmo12g01197 693 Gene3D - 62 212 - -
Cmo12g01197 693 ProSiteProfiles Response regulatory domain profile. 63 178 IPR001789 GO:0000160
Cmo12g01197 693 MobiDBLite consensus disorder prediction 210 245 - -
Cmo12g01197 693 MobiDBLite consensus disorder prediction 1 27 - -
Cmo12g01197 693 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 246 305 IPR017930 -
Cmo12g01197 693 PIRSF RR_ARR_type-B 38 680 IPR017053 GO:0003677|GO:0003700|GO:0009736
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02182 Cmo-Chr4:16045140 Cmo12g01197 Cmo-Chr12:10782304 1.13E-32 dispersed
Cmo10g00516 Cmo-Chr10:2333938 Cmo12g01197 Cmo-Chr12:10782304 8.54E-142 dispersed
Cmo12g01197 Cmo-Chr12:10782304 Cmo14g01636 Cmo-Chr14:12981700 1.54E-94 dispersed
Cmo15g01055 Cmo-Chr15:6845235 Cmo12g01197 Cmo-Chr12:10782304 1.14E-25 dispersed
Cmo11g00397 Cmo-Chr11:1975055 Cmo12g01197 Cmo-Chr12:10782304 2.86E-59 transposed
Cmo11g00476 Cmo-Chr11:2328507 Cmo12g01197 Cmo-Chr12:10782304 0 wgd
Cmo12g01197 Cmo-Chr12:10782304 Cmo09g00426 Cmo-Chr9:1898549 8.18E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10779 PF00072 Response_reg 6.60E-25 CL0304 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01197 K14491 - mcha:111013065 941.028