Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01212 ATGGATGCCGCCAACCCCAGCAATGGCGATGAGGAATCCATTATCACTCCCTTGCTTGCTCCTCAGAAATCGCTTGTCAATTCTTCCTCACAGGTCGCCCTTGTTGGCGCTAATATCTGCCCCATTGAAAGCCTTGATTACGAGATTTTTGATAATGATTTCTTCATGCAAGATTGGAGGAGTCGTGAGGATTTTCAGATATTTCAATACTTGGTTATTAAATGGTTGTCTTGTTTCTTGATCGGTCTGATTATGGGTCTTGTTGGGTTCTTCAACAATCTGGCGGTGGAGAATATTGCAGGGAAGAAGTTTGTTGTTACTTCGAATATGATGCTTGAGGGCAGGTATTGGATGGCTTTTCTTGTTTTCTCTGTTTCAAATCTACTTCTCACCCTATTCGCATCTGTCATTACGGCATTGATCTGCCCCCTAGCAGCCGGCTCAGGTATACCAGAAGTAAAGGCTTATCTGAATGGTGTGGACGCCCCCGGAATATTATCGCCCAGGACATTGTTAGTGAAGATTATTGGCAGCATTGCTATCGTGTCGTCATCTATGGTCGTTGGAAAAGCTGGGCCTATGGTTCATACAGGGGCATGTGTTGCATCCTTGGTAGGTCAGGGGTGTTTCAAAGTATTTGGTTTAACTTGGAGATGGCTATACCATCTCAAGAAGGATCGAGATAGGCGGGATCTTGTAACATGTGGTGCTGCTGCTGGAATCGCTGCTGCTTTTCGTGCTCCCGTTGGGGGCGTGTTGTTTGCTTTTGAAGAGATGGCATCATGGTGGAGAAGCGCCCTTCTGTGGCGAGCATTTTTCACGACGGCTATCGTTGCTGTCGTATTACGCTCACTGATCGATGTTTGTCTGAATGGATTATGTGGATTGTTTGGTAAAGGGGGACTCATAATATTTGATACCTACTCAGACTTCCCCTCATATCACCTCAAAGATCTACCTCCTGTGCTTGCCCTTGCTTTCATTGGAGGCATTCTTGGAAGCTTTTATAATTTTCTTCTAACCAAAGTTCTTCGCGTTTACAATCTCATACACGAGAAAGGCATTGTTTACAAAGTTTTACTGGCTTGCTCTGTCTCGATTTTCACGTCATGTCTTCTTTTCGGATTACCGTGGTTCGCATCGTGCCAACCTTGCCCATCAAGTGCTCGAGAAATCTGTCCTACGATAGGTCGATCGGGTAACTTCAAGAAGTTTCAGTGTTCTTATGGTCACTACAATGATCTTGCAAGTCTTATATTTAACACCAATGATGATGCCATAAAGAACCTCTTTAGCAAAGGCACAGACTCTGAGTTTCAATTCTTATCGATGCTCACATTTTTCGTTACATGTTTTTCGTTGAGCGTTCTTAGTTACGGTACGGTTGCTCCGGTTGGCCTGTTTGTTCCTGTTATTGTGACAGGAGCTTCTTATGGTCGTTTCGTTGGAATGGTTGTCGGTCCATACACAAACCTTAGCCATGGCTTCTTTGCCATATTGGGTGCTGCTTCGTTTCTCGGGGGGTCGATGAGGACGACCGTTTCTTTATGTGTTATTATGCTCGAATTGACCAATAATTTGTTGTTGCTGCCTTTAGTAATGTTGGTTCTCCTTATTTCCAAGACTGTGGCTGATGCTTTCAACTGTAATATTTACAACCAGATCATGAAAGCCAAGGGGTTCCCTTACCTAGAATGCCATGTTGAGCCATACATGAGGCAGCTGACTGTTGCCAGTGTGTTAACAAGTCCACTTCAATTATTCCGTGGCATCGAGAAGGTTCGTAACGTAGTAAACGTTCTCAAATGGACGAGCCATCACGGATTTCCCATCATCGATGAGCCTCCTTTCTCGGAATTCCCTGTTTTATATGGTCTAATTCTCAGAGCTCATCTCATCGTGTTGTTAAAGAAGAAAGCTTTCTTGTCGGTTCCAACACTAGGATTAGAAAGACAGGATGCCTTAAAGCTATTATCAGCTGATGATTTTGCAATGATGGGTTCGGGCGATGTCGATCGGATTGAAGATATTCAGTTGACTGATGAAGAGATGGAGATGTTCATCGATCTACATCCATTCGCTAATACCTCGCCTTGTACTGTCTTGGAGACGATGTCGTTAGCAAAGGCTTTCGCAATTTTTCGAGAAACTGGTTTAAGACACATGCTAGTGATACCTAAGGTCCCCGGGAGATCGCCCGTGGTCGGTATATTGACTCGGCACGACTTCATGCCAGATTACATTTTGAGTTTGCATCCATTGCTAGAGAAGAGCAGATGGAAAAGGTTAAGAATCAAATTTCATCTGAAGAAAAAATTCTTCTAG 2325 43.91 MDAANPSNGDEESIITPLLAPQKSLVNSSSQVALVGANICPIESLDYEIFDNDFFMQDWRSREDFQIFQYLVIKWLSCFLIGLIMGLVGFFNNLAVENIAGKKFVVTSNMMLEGRYWMAFLVFSVSNLLLTLFASVITALICPLAAGSGIPEVKAYLNGVDAPGILSPRTLLVKIIGSIAIVSSSMVVGKAGPMVHTGACVASLVGQGCFKVFGLTWRWLYHLKKDRDRRDLVTCGAAAGIAAAFRAPVGGVLFAFEEMASWWRSALLWRAFFTTAIVAVVLRSLIDVCLNGLCGLFGKGGLIIFDTYSDFPSYHLKDLPPVLALAFIGGILGSFYNFLLTKVLRVYNLIHEKGIVYKVLLACSVSIFTSCLLFGLPWFASCQPCPSSAREICPTIGRSGNFKKFQCSYGHYNDLASLIFNTNDDAIKNLFSKGTDSEFQFLSMLTFFVTCFSLSVLSYGTVAPVGLFVPVIVTGASYGRFVGMVVGPYTNLSHGFFAILGAASFLGGSMRTTVSLCVIMLELTNNLLLLPLVMLVLLISKTVADAFNCNIYNQIMKAKGFPYLECHVEPYMRQLTVASVLTSPLQLFRGIEKVRNVVNVLKWTSHHGFPIIDEPPFSEFPVLYGLILRAHLIVLLKKKAFLSVPTLGLERQDALKLLSADDFAMMGSGDVDRIEDIQLTDEEMEMFIDLHPFANTSPCTVLETMSLAKAFAIFRETGLRHMLVIPKVPGRSPVVGILTRHDFMPDYILSLHPLLEKSRWKRLRIKFHLKKKFF 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10836397 10841850 - CmoCh12G012120.1 Cmo12g01212 393900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01212 774 PRINTS Chloride channel signature 143 160 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo12g01212 774 PRINTS Chloride channel signature 174 193 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo12g01212 774 PRINTS Chloride channel signature 238 257 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo12g01212 774 PRINTS Chloride channel signature 463 483 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo12g01212 774 PRINTS Chloride channel signature 495 511 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo12g01212 774 PRINTS Chloride channel signature 513 532 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo12g01212 774 PRINTS Chloride channel signature 551 565 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo12g01212 774 PANTHER CHLORIDE CHANNEL PROTEIN 12 766 - -
Cmo12g01212 774 Pfam CBS domain 696 743 IPR000644 -
Cmo12g01212 774 Pfam Voltage gated chloride channel 131 545 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo12g01212 774 SUPERFAMILY CBS-domain pair 568 744 IPR046342 -
Cmo12g01212 774 Gene3D - 565 747 IPR046342 -
Cmo12g01212 774 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 12 766 - -
Cmo12g01212 774 CDD CBS_pair_voltage-gated_CLC_euk_bac 576 746 - -
Cmo12g01212 774 SMART cbs_1 697 750 IPR000644 -
Cmo12g01212 774 SMART cbs_1 584 637 IPR000644 -
Cmo12g01212 774 SUPERFAMILY Clc chloride channel 52 566 IPR014743 -
Cmo12g01212 774 PRINTS Plant CLC chloride channel signature 48 56 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cmo12g01212 774 PRINTS Plant CLC chloride channel signature 259 267 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cmo12g01212 774 PRINTS Plant CLC chloride channel signature 273 283 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cmo12g01212 774 PRINTS Plant CLC chloride channel signature 291 298 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cmo12g01212 774 PRINTS Plant CLC chloride channel signature 415 431 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cmo12g01212 774 ProSiteProfiles CBS domain profile. 694 754 IPR000644 -
Cmo12g01212 774 Gene3D Clc chloride channel 66 564 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01212 Cmo-Chr12:10836397 Cmo16g00824 Cmo-Chr16:4330802 0 dispersed
Cmo12g01212 Cmo-Chr12:10836397 Cmo04g00948 Cmo-Chr4:4837882 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01212 K05016 - csv:101216071 1367.06