Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01221 ATGGAGGAACACGAGAAGTGTGGCTGCTGGGCTGTCCTTAAACGCACCGTTTCGGACGCCTCCAAATCTTCCCCCTCTTCCAAACACTCCCCCAACTCCATTCCTCGTGTTACTCTGCTTTACGATTCAGCTACCGAGACGCGGTACCTAAACGCAAGCAACCGAGATTTCTGCCCTCCGGCCGAAGCTCGGCTATCGTTCGACAATGCTCCGCCGCCGCCGTCCTCCGCGGACAAAAACAAGCGGCAGTTACTGAAATTTTCATTTCAGGAACTAAGATCGGCGACCGGAAATTTCCGGCCGGATAGCATACTTGGAGAAGGAGGGTTTGGATTCGTCTTCAAAGGATGGATCGAAGAGAATGGCACAGCGCCGGCCAAACCTGGATCAGGAATCACTGTCGCTGTCAAAAGCTTGAAGCCGGATGGTCTTCAAGGCCACAGAGAATGGGAGGCTGAGGTTAGCTTTCTTGGACAGCTTCACCATCCCAATCTTGTTAAGCTTATTGGATACTGTATTGAAGATGATCAAAGGCTTCTTGTATATGAGTTCATGACGCGTGGTAGTCTTGAAAACCATCTGTTCAGAAGGACTATACCTCTTCCATGGTCAAACAGGATTAAAATTGCACTTGCTGCCGCCAAAGGCTTGGCCTTCCTCCACAATGGTCCAGAACCTGTTATATATAGAGATTTCAAGACATCAAACATATTGCTTGATACAGAGTACAATGCAAAGCTTTCGGATTTTGGCTTGGCAAAGGCTGGGCCTCAGGGAGACAAAACACACGTTTCCACTAGAGTAGTTGGAACATATGGCTATGCTGCACCAGAATATCTAATGACTGGACATTTGACGTCAAAGAGTGATGTCTATAGCTTTGGCGTCGTTCTACTCGAGATTTTAACTGGGAGGAGGTCGATGGACAAGAAACGTCCCAGTGGTGAGCAAAATCTAGTGTCATGGGCTAGGCCATATTTAGAAGACAAAAGGAAGCTTTACCACATAGTGGATCCTCGCTTGGAGCTCAACTACTCCATCCAGGGGGTTCAGAAAATCTCTAAACTAGCTTTTCACTGCATCAGTAGGGATCCAAAATCTCGTCCCACCATGGATGAAGTTGTCAAGTTTCTCATTCCGTTACAGGACCTTAACGACCTCGCCATCTTAGCCTATCATTCGCGCTTGTCTCAGCAAGGTCGACGAAAGAAGAAATCAGATGGACTGCACCAGCTAACGTACACTCAGTCAAGAAACATTAGGACCTCTCCTATGAATGTCGGAATCGTTCATCGTCGTCGATGA 1305 47.74 MEEHEKCGCWAVLKRTVSDASKSSPSSKHSPNSIPRVTLLYDSATETRYLNASNRDFCPPAEARLSFDNAPPPPSSADKNKRQLLKFSFQELRSATGNFRPDSILGEGGFGFVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWEAEVSFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTIPLPWSNRIKIALAAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYLMTGHLTSKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLEDKRKLYHIVDPRLELNYSIQGVQKISKLAFHCISRDPKSRPTMDEVVKFLIPLQDLNDLAILAYHSRLSQQGRRKKKSDGLHQLTYTQSRNIRTSPMNVGIVHRRR 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10901190 10908007 + CmoCh12G012210.1 Cmo12g01221 393909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01221 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Cmo12g01221 434 Gene3D Transferase(Phosphotransferase) domain 1 185 393 - -
Cmo12g01221 434 PANTHER OS01G0588500 PROTEIN-RELATED 78 402 - -
Cmo12g01221 434 PANTHER OS01G0588500 PROTEIN 78 402 - -
Cmo12g01221 434 SUPERFAMILY Protein kinase-like (PK-like) 83 387 IPR011009 -
Cmo12g01221 434 ProSiteProfiles Protein kinase domain profile. 99 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01221 434 ProSitePatterns Protein kinases ATP-binding region signature. 105 137 IPR017441 GO:0005524
Cmo12g01221 434 CDD STKc_IRAK 105 381 - -
Cmo12g01221 434 Pfam Protein tyrosine and serine/threonine kinase 103 378 IPR001245 GO:0004672|GO:0006468
Cmo12g01221 434 Gene3D Phosphorylase Kinase; domain 1 75 184 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00526 Cmo12g01221 CCT
Cmo10g00567 Cmo12g01221 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01221 Cmo-Chr12:10901190 Cmo15g00299 Cmo-Chr15:1402587 9.98E-176 dispersed
Cmo10g00567 Cmo-Chr10:2578452 Cmo12g01221 Cmo-Chr12:10901190 0 wgd
Cmo11g00526 Cmo-Chr11:2569011 Cmo12g01221 Cmo-Chr12:10901190 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74747 PF07714 PK_Tyr_Ser-Thr 9.30E-49 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01221 - - csv:101217498 811.601