Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01231 ATGTCAAGCTGCATCAACAGTGCACAGGAGCAACTCTGCTATATTCCCTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGCAATCTCTTAGACATAGTGACAGTCCGATGTGGTCACTGCAGCAACCTCTGGTCGGTGAACATGGCCGCCGCTTTCCAATCTCTCTCATGGAAAAATTCTCAGGCATCAAGCCACAGCCACAATGGAAATGCAGCTGATTACAGGGTAGAATTGGGCTCATCATCAAAATGCAACAACAAAATGAAGACGAGAGCACCAATTCAAAACAATACAAATGATGATCAAAGAGTGATCAACAGACCTCCCGAGAAGAAGCAGAGAGTACCTTCTGCATATAATAAGTTCATAAAAGAGGAAATCCAGAGGATCAAAGCAAATAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTACCCACACATTCAATGCCTCATGCTGGAAGCCAACAATCTCAAGACTCAGAAGGATGGATCTGAGAAGCATTATATGTCAGTGCCAGGGCTGCACTATTGA 570 43.68 MSSCINSAQEQLCYIPCNFCNIVLAVSVPCSNLLDIVTVRCGHCSNLWSVNMAAAFQSLSWKNSQASSHSHNGNAADYRVELGSSSKCNNKMKTRAPIQNNTNDDQRVINRPPEKKQRVPSAYNKFIKEEIQRIKANNPDITHREAFSTAAKNWAHYPHIQCLMLEANNLKTQKDGSEKHYMSVPGLHY 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10977446 10981728 + CmoCh12G012310.1 Cmo12g01231 393919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01231 189 Pfam YABBY protein 8 162 IPR006780 GO:0007275
Cmo12g01231 189 PANTHER PROTEIN YABBY 6-RELATED 1 179 IPR006780 GO:0007275
Cmo12g01231 189 SUPERFAMILY HMG-box 107 158 IPR036910 -
Cmo12g01231 189 PANTHER AXIAL REGULATOR YABBY 5 1 179 - -
Cmo12g01231 189 Gene3D High mobility group box domain 109 174 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01795 Cmo-Chr4:9028899 Cmo12g01231 Cmo-Chr12:10977446 8.68E-41 dispersed
Cmo12g01231 Cmo-Chr12:10977446 Cmo15g01209 Cmo-Chr15:8382484 2.00E-49 dispersed
Cmo18g01120 Cmo-Chr18:11567244 Cmo12g01231 Cmo-Chr12:10977446 1.15E-33 dispersed
Cmo10g00578 Cmo-Chr10:2633020 Cmo12g01231 Cmo-Chr12:10977446 4.92E-80 wgd
Cmo11g00535 Cmo-Chr11:2613770 Cmo12g01231 Cmo-Chr12:10977446 6.30E-85 wgd
Cmo12g01231 Cmo-Chr12:10977446 Cmo05g01308 Cmo-Chr5:10151693 3.18E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10781 PF04690 YABBY 4.80E-67 CL0114 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01231 K25796 - csv:101219877 331.257