Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo12g01231 | ATGTCAAGCTGCATCAACAGTGCACAGGAGCAACTCTGCTATATTCCCTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGCAATCTCTTAGACATAGTGACAGTCCGATGTGGTCACTGCAGCAACCTCTGGTCGGTGAACATGGCCGCCGCTTTCCAATCTCTCTCATGGAAAAATTCTCAGGCATCAAGCCACAGCCACAATGGAAATGCAGCTGATTACAGGGTAGAATTGGGCTCATCATCAAAATGCAACAACAAAATGAAGACGAGAGCACCAATTCAAAACAATACAAATGATGATCAAAGAGTGATCAACAGACCTCCCGAGAAGAAGCAGAGAGTACCTTCTGCATATAATAAGTTCATAAAAGAGGAAATCCAGAGGATCAAAGCAAATAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTACCCACACATTCAATGCCTCATGCTGGAAGCCAACAATCTCAAGACTCAGAAGGATGGATCTGAGAAGCATTATATGTCAGTGCCAGGGCTGCACTATTGA | 570 | 43.68 | MSSCINSAQEQLCYIPCNFCNIVLAVSVPCSNLLDIVTVRCGHCSNLWSVNMAAAFQSLSWKNSQASSHSHNGNAADYRVELGSSSKCNNKMKTRAPIQNNTNDDQRVINRPPEKKQRVPSAYNKFIKEEIQRIKANNPDITHREAFSTAAKNWAHYPHIQCLMLEANNLKTQKDGSEKHYMSVPGLHY | 189 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 10977446 | 10981728 | + | CmoCh12G012310.1 | Cmo12g01231 | 393919 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo12g01231 | 189 | Pfam | YABBY protein | 8 | 162 | IPR006780 | GO:0007275 | |
Cmo12g01231 | 189 | PANTHER | PROTEIN YABBY 6-RELATED | 1 | 179 | IPR006780 | GO:0007275 | |
Cmo12g01231 | 189 | SUPERFAMILY | HMG-box | 107 | 158 | IPR036910 | - | |
Cmo12g01231 | 189 | PANTHER | AXIAL REGULATOR YABBY 5 | 1 | 179 | - | - | |
Cmo12g01231 | 189 | Gene3D | High mobility group box domain | 109 | 174 | IPR036910 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g01795 | Cmo-Chr4:9028899 | Cmo12g01231 | Cmo-Chr12:10977446 | 8.68E-41 | dispersed | |
Cmo12g01231 | Cmo-Chr12:10977446 | Cmo15g01209 | Cmo-Chr15:8382484 | 2.00E-49 | dispersed | |
Cmo18g01120 | Cmo-Chr18:11567244 | Cmo12g01231 | Cmo-Chr12:10977446 | 1.15E-33 | dispersed | |
Cmo10g00578 | Cmo-Chr10:2633020 | Cmo12g01231 | Cmo-Chr12:10977446 | 4.92E-80 | wgd | |
Cmo11g00535 | Cmo-Chr11:2613770 | Cmo12g01231 | Cmo-Chr12:10977446 | 6.30E-85 | wgd | |
Cmo12g01231 | Cmo-Chr12:10977446 | Cmo05g01308 | Cmo-Chr5:10151693 | 3.18E-121 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10781 | PF04690 | YABBY | 4.80E-67 | CL0114 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo12g01231 | K25796 | - | csv:101219877 | 331.257 |