Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01248 ATGGCCAGCATAACCCGAGACGATTCCGACCACGACAGCACAAGCTCCTCCCTCACGCTCCAAGACTCCACCCGCAGCTGGCTGAGCAACCTAAGCATCAGCAGTCGCCGAAGCAGCACGTCCGCCTTAGACGCCGCCTTATCCCCCTACAAACCACACAAAGCAAACCACGTGGCATGGGAGGCGATGCGGTGGGTGAGACGCGTGAAAGGGCGCGTGGGGCTGGAGCACTTCCGGCTGCTACGGCGGGTGGGGAGCGGAGACATAGGGAATGTTTATTTGTGCGAAATAAGGAACCCGGTGGTGGGGCTGGCGCAGTGCTATTACGCCATGAAAGTGGTGGATAGAGAAGCCGTGTCGGTGAGGAACAAAGGGAGGAGAGCGGACATGGAGAAGGAGATTCTTAAGCTCATTGATCATCCCTTTTTGCCTACGCTTTATGCCGAGTTTGAAGCTTCCCATTACTCCTGTTTGGTTATGGAGTTTTGTCCCGGCGGCGATTTGTACGCCGCCCGCCAACGCCTCCCCGGAAAACGCTTCCCCATTTCTTCCTCCAAATTTTATGCGGCGGAGATAATTTTAGCGTTAGAGTATTTGCATATGATGGGGATAGTTTACAGAGATTTAAAGCCGGAAAACGTGCTGGTTAGAGAAGACGGCCACATAATGCTGTCGGATTTCGATCTCTGTCTCAAATGCGACGTCGTTCCCAAGCTCATCCGTTGCAGGACCACCGCCGAACGCCACGTCACAAAAACCTACTCCACCTCATCAACTACCTCCTGCGCCGCCGCTCCAATCCACCCTGTCCTCTCCTGTTTCTCCATTACCCGCCGCCCAAACTCCACCACCATCACCACCATAACCGAACACGCCGCCGAATCCGCCGCCACTGTAGACGGCGAGTTCGACCCAGAACCGGAATTGATAGCGGAGCCGATGAATGCCCGGTCTAAATCCTTCGTTGGAACCCATGAGTATTTGGCGCCGGAGGTGATTTCGGGCCAAGGACACGGCAGCGCCGTCGATTGGTGGACGTTGGGGATTTTCCTCTATGAAATGTTGTACGGAAAAACCCCATTTAAAGGGGAAAATAACGAGAAAACCCTAATGAATATCTTGAAGCAGCCATTGACGTTTCCAAGAATTGGGGTTAGTAGCAACAAAGAGTATGAAGAAATGGTGAAAGTTGAGGATCTAATTAGGAAGCTTTTGGTGAAGAATCCCAAGAAGAGAATTGGAAGCTTAAAGGGTTCGGTTGAAATCAAAAGACATGAGTTTTTCAAAGGGGTAAATTGGGCATTAATCCGCTCGGTTCGTCCTCCGCAAGTCCCGAATTCCGATCATCTTCTTCACAAAACCCTAACCCAATCAAAATACCCGTCAAACTACGTACCCAAATTGACCAAGAAACAACGACAACAACCCTACCAAATCCCGTCTCACCATTTCGATTACTTCTAA 1464 51.3 MASITRDDSDHDSTSSSLTLQDSTRSWLSNLSISSRRSSTSALDAALSPYKPHKANHVAWEAMRWVRRVKGRVGLEHFRLLRRVGSGDIGNVYLCEIRNPVVGLAQCYYAMKVVDREAVSVRNKGRRADMEKEILKLIDHPFLPTLYAEFEASHYSCLVMEFCPGGDLYAARQRLPGKRFPISSSKFYAAEIILALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLCLKCDVVPKLIRCRTTAERHVTKTYSTSSTTSCAAAPIHPVLSCFSITRRPNSTTITTITEHAAESAATVDGEFDPEPELIAEPMNARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGIFLYEMLYGKTPFKGENNEKTLMNILKQPLTFPRIGVSSNKEYEEMVKVEDLIRKLLVKNPKKRIGSLKGSVEIKRHEFFKGVNWALIRSVRPPQVPNSDHLLHKTLTQSKYPSNYVPKLTKKQRQQPYQIPSHHFDYF 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11070285 11073031 + CmoCh12G012480.1 Cmo12g01248 393936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01248 487 Gene3D Transferase(Phosphotransferase) domain 1 163 232 - -
Cmo12g01248 487 CDD STKc_phototropin_like 77 445 - -
Cmo12g01248 487 PANTHER PROTEIN KINASE PINOID 2 1 487 - -
Cmo12g01248 487 ProSiteProfiles Protein kinase domain profile. 78 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01248 487 Gene3D Transferase(Phosphotransferase) domain 1 315 446 - -
Cmo12g01248 487 Gene3D Phosphorylase Kinase; domain 1 76 162 - -
Cmo12g01248 487 SMART serkin_6 78 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01248 487 PANTHER FLIPPASE KINASE 1-RELATED 1 487 - -
Cmo12g01248 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Cmo12g01248 487 Pfam Protein kinase domain 79 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01248 487 Pfam Protein kinase domain 318 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01248 487 SUPERFAMILY Protein kinase-like (PK-like) 55 454 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01248 Cmo-Chr12:11070285 Cmo07g00355 Cmo-Chr7:1640794 1.63E-153 dispersed
Cmo12g01248 Cmo-Chr12:11070285 Cmo05g01322 Cmo-Chr5:10244098 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74748 PF00069 Pkinase 3.30E-31 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01248 K08286 - csv:101202905 729.554