Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01258 ATGGCGTCTGCAATTTCTCTTTGCTCTGTTTTTGTTGTTGTTCTTGTTCTGATTCAGTGGGTCAACTCGGAGCCGACTCAGGACAAACTTGCCCTTCTCGATTTCCTCTCTAAAGCTCCTCACGCCAATCGGCATCAATGGAATACCTCCAATTCCGTCTGTAATTGGATCGGCGTTCAGTGCAATTCCAATCAGTCGTTTGTTTATTCCCTCCGTTTGCCCGGCGCTGGCCTCGTCGGTACGATTCCGGCCAACACGATCGGTAAATTGACTCAGCTTCGAGTTCTCAGCCTTCGCTCTAATCTTCTCTCCGGCAAGATCCCGTCGGATTTTTCTAATTTGGTAATGCTGCAGAATCTGTATCTTCAGGATAATGCATTCTCCGGCGAGTTTCCGCCCAGTTTGACTCGTTTGACTCGGTTGACTCGGCTGGATTTGTCGTCGAATAACTTTTCCGGTACGATTCCGGCGGCCGTCGACAATCTGACCCACTTGACGGGGATTTTCTTGCAGAACAATGGGTTCTCCGGTTCAATCCCGAGAATCTCGGCCGTTAATTTAACAAACTTCAACGTCTCTAACAACAAACTCAACGGCTCGATTCCAAAACCGTTAGTGAAATTCCCAACCTCCTCCTTCGCCGGAAATCTAAATCTCTGCGGCGGACCATTCCCCTCCTGCAACCCATCCACCTCTCCAGCACCGCCGCCACAAAACCCACCAGCCGTCACTGTCGGGAAACCAAAAAACCGGTCCACAGCTGCCATAATCGGGATCATCATCGGCGGTGTCTTCGCCGCAATTCTCCTCCTCCTCTGTATCCAGCGCCGCTCCCACCATCCAGCGAAGTTCCGGAAGCCATCGGCGGCGGCGAGCGCAATCTCGATAGTGGAGGCCGGGACGTCGTCGTCGAAATACGACATTACCGGAGGGTCGGTGGAGGCGGCGGAGAGGAACAAGCTGACGTTCTTCGAAGGGGGAAATTACAATTTCGATTTGGAGGATTTGTTGAGGGCTTCGGCGGAGGTGCTGGGGAAAGGAGACGTGGGAACGTCGTATAAGGCGGTGCTGGAAGAAGGGACGACGGTGGTGGTGAAGCGGCTGAAGGATGTGGCGGCGACGAAGAAGGAATTCGAGATTCAAATGGAAGCTTTGGGGAAGATTAAACATCAAAATGTGGTTCCGCTTCGAGCTTTTTACTTCTCCAATGATGAGAAATTGCTGGTTTTTGATTATATCTCCACCGGAAATTTGTCGGTGAGCCTTCACGGTAACAGAAGCTCCGGCAGGACACCATTAGATTGGGATTCAAGAATGAAAATAGCTCTAAGCGTGGGCAGGGGACTTGCCTATCTCCACCTCCCCTGCAACCTGGTTCACGGCAACATTAAATCCTCCAACGTCCTTCTCCGGCCACACCACGACGCCTGCATCACTGACTTCGGCCTCAACCCATTCTTCGCCACCGCCACGCCGCCGAATCGTCTCGCCGGTTACCGAGCGCCAGAGGTACTGGAAACCCGTAAAGTCACCTTCAAATCCGACGTTTACAGCTATGGCGTCCTGCTCCTCGAGCTCTTGACAGGTAAAGCCCCCAACCAACAGTCCCTCGGCGAAGACGGCATCAACCTTCCCCGGTGGGTTGAGTCCGTCGTCCAGGAGGAATGGACGGCGGAGGTTTTTGACGTTGAATTGATGCGATTCCACAACATTGAAGAAGAGATGGTTCCGTTGCTTCAAGTTGCAATGTCTTGCGTTTCCACCGTCCCCGATCAACGACCAACGATGTCAGAAGTTGTACGGATGATCGAAGACATGAACAGAAGTGAGACTGATGACGGGTTGCGCCTGTCTTCCGATGACCCCTCTAAAGGCTCCGATGTTAACATGTCGTCGGCTGAATCGAGAACTCCGTCATAG 1920 52.5 MASAISLCSVFVVVLVLIQWVNSEPTQDKLALLDFLSKAPHANRHQWNTSNSVCNWIGVQCNSNQSFVYSLRLPGAGLVGTIPANTIGKLTQLRVLSLRSNLLSGKIPSDFSNLVMLQNLYLQDNAFSGEFPPSLTRLTRLTRLDLSSNNFSGTIPAAVDNLTHLTGIFLQNNGFSGSIPRISAVNLTNFNVSNNKLNGSIPKPLVKFPTSSFAGNLNLCGGPFPSCNPSTSPAPPPQNPPAVTVGKPKNRSTAAIIGIIIGGVFAAILLLLCIQRRSHHPAKFRKPSAAASAISIVEAGTSSSKYDITGGSVEAAERNKLTFFEGGNYNFDLEDLLRASAEVLGKGDVGTSYKAVLEEGTTVVVKRLKDVAATKKEFEIQMEALGKIKHQNVVPLRAFYFSNDEKLLVFDYISTGNLSVSLHGNRSSGRTPLDWDSRMKIALSVGRGLAYLHLPCNLVHGNIKSSNVLLRPHHDACITDFGLNPFFATATPPNRLAGYRAPEVLETRKVTFKSDVYSYGVLLLELLTGKAPNQQSLGEDGINLPRWVESVVQEEWTAEVFDVELMRFHNIEEEMVPLLQVAMSCVSTVPDQRPTMSEVVRMIEDMNRSETDDGLRLSSDDPSKGSDVNMSSAESRTPS 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11166731 11169929 - CmoCh12G012580.1 Cmo12g01258 393946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01258 639 PANTHER OS05G0480400 PROTEIN 8 624 - -
Cmo12g01258 639 ProSiteProfiles Protein kinase domain profile. 338 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01258 639 Pfam Protein kinase domain 341 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01258 639 Gene3D Ribonuclease Inhibitor 26 184 IPR032675 -
Cmo12g01258 639 MobiDBLite consensus disorder prediction 607 639 - -
Cmo12g01258 639 Pfam Leucine rich repeat 79 126 IPR001611 GO:0005515
Cmo12g01258 639 CDD STKc_IRAK 344 606 - -
Cmo12g01258 639 Gene3D Transferase(Phosphotransferase) domain 1 413 623 - -
Cmo12g01258 639 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Cmo12g01258 639 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515
Cmo12g01258 639 PANTHER OS05G0588300 PROTEIN 8 624 - -
Cmo12g01258 639 Gene3D Ribonuclease Inhibitor 185 231 IPR032675 -
Cmo12g01258 639 MobiDBLite consensus disorder prediction 622 639 - -
Cmo12g01258 639 Gene3D Phosphorylase Kinase; domain 1 307 412 - -
Cmo12g01258 639 SUPERFAMILY L domain-like 31 208 - -
Cmo12g01258 639 SUPERFAMILY Protein kinase-like (PK-like) 342 603 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00631 Cmo12g01258 CCT
Cmo11g00588 Cmo12g01258 CCT
Cmo05g01333 Cmo12g01258 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01258 Cmo-Chr12:11166731 Cmo20g00327 Cmo-Chr20:1600161 0 dispersed
Cmo10g00631 Cmo-Chr10:2860458 Cmo12g01258 Cmo-Chr12:11166731 0 wgd
Cmo11g00588 Cmo-Chr11:2841086 Cmo12g01258 Cmo-Chr12:11166731 0 wgd
Cmo12g01258 Cmo-Chr12:11166731 Cmo05g01333 Cmo-Chr5:10335096 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74749 PF00069 Pkinase 7.30E-37 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01258 - - csv:101205802 969.918