Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01271 ATGGAACAGCACCAGCTCTCATACAAATGCCAGCAGCAGATCAAAACCGTGGTGACGATATGTCTCGCATATGAGATGAAGGGCGATACCCATTTCACCATTCATTCTTTGCTGCAAATTTTCCTGTTCTTTGGCACTCTTTTGTGCCTAGCTTCTTCTGAAGAGCTTCTTCAAGTTTCCGGCCATGGCGGCGGCGGCGGATTGACCGACGCTGAAGCTCACTACATCCGTCAACGGCAACTTCTTTACTACAGAGATGAATTTGGCGACCGTGGTGAAGAAGTCACCGTTGATCCTAAGCTGGTTTTTGAAAACGACAGGCTTAGAAATGCTTACATAGCTTTACAAGCTTGGAAGCAAGCGATTCTATCTGACCCTTTGAATCTTACTCTTAATTGGGTTGGATCTGATGTTTGTAGTTACAAAGGGGTTTTCTGTGCTGACGCGCCGGATAATTCCTCGATCCGTACGGTCGCCGGAATCGACCTTAACCATGGCGACATTGCCGGCTACTTGCCGGAGGAGCTCGGCCTTCTTGTGGATCTTGCATTGTTTCATATCAACTCCAACCGGTTTTGCGGCACTGTGCCTCACAAGTTTAAGCACTTGAAGATGCTGTTCGAGTTGGATCTGAGCAACAATCGCTTCGCCGGAAAGTTCCCTCGGGTGGTTCTGGAGCTGCCGGAGCTGAAGTTTTTGGATCTGAGGTTCAATGAGTTTGAAGGGACCGTTCCTAAAGAGCTTTTCGACAAGGATTTGGACGCTATTTTCATTAACCACAATAGATTCCGGTTTGACTTGCCGGAAAATTTCGGGAACTCGCCGGTTTCGGTGATTGTTCTTGCGAATAACAAATTTCACGGCTGTGTGCCGGGGAGTATTGGGAATATGACGAGGTTGAATGAGATTATTTTGATGAATAATGGGTTTCGGTCGTGTTTGCCGGCGGAGATTGGGTTGCTGAAGAATCTGACGGTGTTGGATTTGAGTTTTAATGAGTTTCTTGGAGCGTTGCCGGAGACGATCGGCGGAATGGTGAGTTTAGAGCAGCTGAATGTGGCGCATAATTTCTTGTCCGGGAAGGTTCCGGAGAGTATCTGTAAGTTGCCGAATCTGAAGAACTTTACCTATTCGTATAATTTCTTTACTGGAGAAGCGCCGTCGTGCTTGGCGTTGCCGGGCTTTGATGATCGGAGGAACTGTATTCCGAAGCGGCCGGTGCAGCGTTCGGAGAGGCAATGTAAGTCGTTCTTGTCTAAGCCTGTGGATTGCAGTTCTTTTGGATGTCCTTCTTATGTTGCTCCGTCGCCACCTGTGGTGGTGCCTTCTCCGCCACCTGTTGTTGTTCCATCTCCGCCGCCACCTGATTGGGATTCACACCCCATTTACCGACCACACTCTCCCCCTCCCCCACCGCCGCCCGTCCACTCTCCTCCCCCGCCTCCACCTTCCCCACCTCCGCCTTCTCCACCGCCGCCTGTCTACTCTCCTCCCCCACCACCACCTTCCCCACCTCCGCCTTCTTCATCGCCCCCACCACCGCCAGTCTACTCTCCACCCCCACCTCCCCCATCTCCTCCGCCGCCCTCCCCTCCACCGCCATCACCCCCACCGCCGCCCCCACCAGTTTACTCTCCACCCCCACCATCTCCACCGCCGCCCTCACCCCCACCGCCAGTTTACTCTCCACCCCCACCACCACCATCTCCGCCACCACCAGCGCCGGTGTATTGCATCCGACCACCACCACCCCCGCCTCCACCAAATTCCCCACCTCCTCCATTATTCTCTCCACCCCCACCCATTTACTATTACAATTCACCGCCACCGCCCAACTCTCCACCACCACCACCACCAATGTACTCTCCTCCGCCACCGCCCCACTCCCCACCTCCTCCACCGCATTCACCACCACCTCCAATCTATCCTTACCTATCTCCCCCACCTCCACCTGTCTATTCCCCTCCTCCACCTGTCTATTCCCCTCCTCCACCTGTCTATTCCCCACCACCACCACCACCATGTATAGAGCCACCCCCACCACCACCGCCGCCATGTATAGAGTATCATGAACCCCCACCTCCACCATCACCATCACCATCACCACCGCCACCCTTCCAATACCTTCCTCCACCATCTCCTTCCCCCCCACCACCACCACCACCCACCCCAGTTTTCCATTCACCTCCCCCACCAATTTATTACTCTCCACCACCACCGTCACCGCCGCCACCCTCATCCCCACCACCATCACCCGTATACGAAGGCCCATTGCCACCAATCTATGGAGTTTCGTACGCCTCTCCTCCACCTCCACCCTACTATTGA 2328 54.17 MEQHQLSYKCQQQIKTVVTICLAYEMKGDTHFTIHSLLQIFLFFGTLLCLASSEELLQVSGHGGGGGLTDAEAHYIRQRQLLYYRDEFGDRGEEVTVDPKLVFENDRLRNAYIALQAWKQAILSDPLNLTLNWVGSDVCSYKGVFCADAPDNSSIRTVAGIDLNHGDIAGYLPEELGLLVDLALFHINSNRFCGTVPHKFKHLKMLFELDLSNNRFAGKFPRVVLELPELKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFRFDLPENFGNSPVSVIVLANNKFHGCVPGSIGNMTRLNEIILMNNGFRSCLPAEIGLLKNLTVLDLSFNEFLGALPETIGGMVSLEQLNVAHNFLSGKVPESICKLPNLKNFTYSYNFFTGEAPSCLALPGFDDRRNCIPKRPVQRSERQCKSFLSKPVDCSSFGCPSYVAPSPPVVVPSPPPVVVPSPPPPDWDSHPIYRPHSPPPPPPPVHSPPPPPPSPPPPSPPPPVYSPPPPPPSPPPPSSSPPPPPVYSPPPPPPSPPPPSPPPPSPPPPPPPVYSPPPPSPPPPSPPPPVYSPPPPPPSPPPPAPVYCIRPPPPPPPPNSPPPPLFSPPPPIYYYNSPPPPNSPPPPPPMYSPPPPPHSPPPPPHSPPPPIYPYLSPPPPPVYSPPPPVYSPPPPVYSPPPPPPCIEPPPPPPPPCIEYHEPPPPPSPSPSPPPPFQYLPPPSPSPPPPPPPTPVFHSPPPPIYYSPPPPSPPPPSSPPPSPVYEGPLPPIYGVSYASPPPPPYY 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11268328 11273318 - CmoCh12G012710.1 Cmo12g01271 393959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01271 775 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 5 41 455 - -
Cmo12g01271 775 MobiDBLite consensus disorder prediction 686 754 - -
Cmo12g01271 775 SUPERFAMILY L domain-like 113 393 - -
Cmo12g01271 775 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 41 455 - -
Cmo12g01271 775 Pfam Leucine rich repeat N-terminal domain 114 146 IPR013210 -
Cmo12g01271 775 MobiDBLite consensus disorder prediction 452 570 - -
Cmo12g01271 775 Pfam Leucine rich repeat 323 376 IPR001611 GO:0005515
Cmo12g01271 775 Pfam Leucine rich repeat 184 239 IPR001611 GO:0005515
Cmo12g01271 775 MobiDBLite consensus disorder prediction 611 635 - -
Cmo12g01271 775 Gene3D Ribonuclease Inhibitor 112 271 IPR032675 -
Cmo12g01271 775 PRINTS Proline rich extensin signature 472 488 - -
Cmo12g01271 775 PRINTS Proline rich extensin signature 489 506 - -
Cmo12g01271 775 PRINTS Proline rich extensin signature 435 447 - -
Cmo12g01271 775 PRINTS Proline rich extensin signature 450 471 - -
Cmo12g01271 775 Gene3D Ribonuclease Inhibitor 272 401 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00642 Cmo12g01271 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01390 Cmo-Chr6:10200801 Cmo12g01271 Cmo-Chr12:11268328 1.12E-146 dispersed
Cmo08g00869 Cmo-Chr8:5609995 Cmo12g01271 Cmo-Chr12:11268328 7.88E-105 dispersed
Cmo10g00708 Cmo-Chr10:3249917 Cmo12g01271 Cmo-Chr12:11268328 3.08E-103 dispersed
Cmo11g00672 Cmo-Chr11:3237138 Cmo12g01271 Cmo-Chr12:11268328 1.63E-99 dispersed
Cmo12g01271 Cmo-Chr12:11268328 Cmo14g01778 Cmo-Chr14:13715371 3.02E-139 dispersed
Cmo11g01999 Cmo-Chr11:13687292 Cmo12g01271 Cmo-Chr12:11268328 9.01E-128 transposed
Cmo10g00642 Cmo-Chr10:2945225 Cmo12g01271 Cmo-Chr12:11268328 0 wgd
Cmo11g00596 Cmo-Chr11:2873279 Cmo12g01271 Cmo-Chr12:11268328 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01271 - - csv:101210261 754.977