Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo12g01271 | ATGGAACAGCACCAGCTCTCATACAAATGCCAGCAGCAGATCAAAACCGTGGTGACGATATGTCTCGCATATGAGATGAAGGGCGATACCCATTTCACCATTCATTCTTTGCTGCAAATTTTCCTGTTCTTTGGCACTCTTTTGTGCCTAGCTTCTTCTGAAGAGCTTCTTCAAGTTTCCGGCCATGGCGGCGGCGGCGGATTGACCGACGCTGAAGCTCACTACATCCGTCAACGGCAACTTCTTTACTACAGAGATGAATTTGGCGACCGTGGTGAAGAAGTCACCGTTGATCCTAAGCTGGTTTTTGAAAACGACAGGCTTAGAAATGCTTACATAGCTTTACAAGCTTGGAAGCAAGCGATTCTATCTGACCCTTTGAATCTTACTCTTAATTGGGTTGGATCTGATGTTTGTAGTTACAAAGGGGTTTTCTGTGCTGACGCGCCGGATAATTCCTCGATCCGTACGGTCGCCGGAATCGACCTTAACCATGGCGACATTGCCGGCTACTTGCCGGAGGAGCTCGGCCTTCTTGTGGATCTTGCATTGTTTCATATCAACTCCAACCGGTTTTGCGGCACTGTGCCTCACAAGTTTAAGCACTTGAAGATGCTGTTCGAGTTGGATCTGAGCAACAATCGCTTCGCCGGAAAGTTCCCTCGGGTGGTTCTGGAGCTGCCGGAGCTGAAGTTTTTGGATCTGAGGTTCAATGAGTTTGAAGGGACCGTTCCTAAAGAGCTTTTCGACAAGGATTTGGACGCTATTTTCATTAACCACAATAGATTCCGGTTTGACTTGCCGGAAAATTTCGGGAACTCGCCGGTTTCGGTGATTGTTCTTGCGAATAACAAATTTCACGGCTGTGTGCCGGGGAGTATTGGGAATATGACGAGGTTGAATGAGATTATTTTGATGAATAATGGGTTTCGGTCGTGTTTGCCGGCGGAGATTGGGTTGCTGAAGAATCTGACGGTGTTGGATTTGAGTTTTAATGAGTTTCTTGGAGCGTTGCCGGAGACGATCGGCGGAATGGTGAGTTTAGAGCAGCTGAATGTGGCGCATAATTTCTTGTCCGGGAAGGTTCCGGAGAGTATCTGTAAGTTGCCGAATCTGAAGAACTTTACCTATTCGTATAATTTCTTTACTGGAGAAGCGCCGTCGTGCTTGGCGTTGCCGGGCTTTGATGATCGGAGGAACTGTATTCCGAAGCGGCCGGTGCAGCGTTCGGAGAGGCAATGTAAGTCGTTCTTGTCTAAGCCTGTGGATTGCAGTTCTTTTGGATGTCCTTCTTATGTTGCTCCGTCGCCACCTGTGGTGGTGCCTTCTCCGCCACCTGTTGTTGTTCCATCTCCGCCGCCACCTGATTGGGATTCACACCCCATTTACCGACCACACTCTCCCCCTCCCCCACCGCCGCCCGTCCACTCTCCTCCCCCGCCTCCACCTTCCCCACCTCCGCCTTCTCCACCGCCGCCTGTCTACTCTCCTCCCCCACCACCACCTTCCCCACCTCCGCCTTCTTCATCGCCCCCACCACCGCCAGTCTACTCTCCACCCCCACCTCCCCCATCTCCTCCGCCGCCCTCCCCTCCACCGCCATCACCCCCACCGCCGCCCCCACCAGTTTACTCTCCACCCCCACCATCTCCACCGCCGCCCTCACCCCCACCGCCAGTTTACTCTCCACCCCCACCACCACCATCTCCGCCACCACCAGCGCCGGTGTATTGCATCCGACCACCACCACCCCCGCCTCCACCAAATTCCCCACCTCCTCCATTATTCTCTCCACCCCCACCCATTTACTATTACAATTCACCGCCACCGCCCAACTCTCCACCACCACCACCACCAATGTACTCTCCTCCGCCACCGCCCCACTCCCCACCTCCTCCACCGCATTCACCACCACCTCCAATCTATCCTTACCTATCTCCCCCACCTCCACCTGTCTATTCCCCTCCTCCACCTGTCTATTCCCCTCCTCCACCTGTCTATTCCCCACCACCACCACCACCATGTATAGAGCCACCCCCACCACCACCGCCGCCATGTATAGAGTATCATGAACCCCCACCTCCACCATCACCATCACCATCACCACCGCCACCCTTCCAATACCTTCCTCCACCATCTCCTTCCCCCCCACCACCACCACCACCCACCCCAGTTTTCCATTCACCTCCCCCACCAATTTATTACTCTCCACCACCACCGTCACCGCCGCCACCCTCATCCCCACCACCATCACCCGTATACGAAGGCCCATTGCCACCAATCTATGGAGTTTCGTACGCCTCTCCTCCACCTCCACCCTACTATTGA | 2328 | 54.17 | MEQHQLSYKCQQQIKTVVTICLAYEMKGDTHFTIHSLLQIFLFFGTLLCLASSEELLQVSGHGGGGGLTDAEAHYIRQRQLLYYRDEFGDRGEEVTVDPKLVFENDRLRNAYIALQAWKQAILSDPLNLTLNWVGSDVCSYKGVFCADAPDNSSIRTVAGIDLNHGDIAGYLPEELGLLVDLALFHINSNRFCGTVPHKFKHLKMLFELDLSNNRFAGKFPRVVLELPELKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFRFDLPENFGNSPVSVIVLANNKFHGCVPGSIGNMTRLNEIILMNNGFRSCLPAEIGLLKNLTVLDLSFNEFLGALPETIGGMVSLEQLNVAHNFLSGKVPESICKLPNLKNFTYSYNFFTGEAPSCLALPGFDDRRNCIPKRPVQRSERQCKSFLSKPVDCSSFGCPSYVAPSPPVVVPSPPPVVVPSPPPPDWDSHPIYRPHSPPPPPPPVHSPPPPPPSPPPPSPPPPVYSPPPPPPSPPPPSSSPPPPPVYSPPPPPPSPPPPSPPPPSPPPPPPPVYSPPPPSPPPPSPPPPVYSPPPPPPSPPPPAPVYCIRPPPPPPPPNSPPPPLFSPPPPIYYYNSPPPPNSPPPPPPMYSPPPPPHSPPPPPHSPPPPIYPYLSPPPPPVYSPPPPVYSPPPPVYSPPPPPPCIEPPPPPPPPCIEYHEPPPPPSPSPSPPPPFQYLPPPSPSPPPPPPPTPVFHSPPPPIYYSPPPPSPPPPSSPPPSPVYEGPLPPIYGVSYASPPPPPYY | 775 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 11268328 | 11273318 | - | CmoCh12G012710.1 | Cmo12g01271 | 393959 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo12g01271 | 775 | PANTHER | LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 5 | 41 | 455 | - | - | |
Cmo12g01271 | 775 | MobiDBLite | consensus disorder prediction | 686 | 754 | - | - | |
Cmo12g01271 | 775 | SUPERFAMILY | L domain-like | 113 | 393 | - | - | |
Cmo12g01271 | 775 | PANTHER | LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED | 41 | 455 | - | - | |
Cmo12g01271 | 775 | Pfam | Leucine rich repeat N-terminal domain | 114 | 146 | IPR013210 | - | |
Cmo12g01271 | 775 | MobiDBLite | consensus disorder prediction | 452 | 570 | - | - | |
Cmo12g01271 | 775 | Pfam | Leucine rich repeat | 323 | 376 | IPR001611 | GO:0005515 | |
Cmo12g01271 | 775 | Pfam | Leucine rich repeat | 184 | 239 | IPR001611 | GO:0005515 | |
Cmo12g01271 | 775 | MobiDBLite | consensus disorder prediction | 611 | 635 | - | - | |
Cmo12g01271 | 775 | Gene3D | Ribonuclease Inhibitor | 112 | 271 | IPR032675 | - | |
Cmo12g01271 | 775 | PRINTS | Proline rich extensin signature | 472 | 488 | - | - | |
Cmo12g01271 | 775 | PRINTS | Proline rich extensin signature | 489 | 506 | - | - | |
Cmo12g01271 | 775 | PRINTS | Proline rich extensin signature | 435 | 447 | - | - | |
Cmo12g01271 | 775 | PRINTS | Proline rich extensin signature | 450 | 471 | - | - | |
Cmo12g01271 | 775 | Gene3D | Ribonuclease Inhibitor | 272 | 401 | IPR032675 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo10g00642 | Cmo12g01271 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g01390 | Cmo-Chr6:10200801 | Cmo12g01271 | Cmo-Chr12:11268328 | 1.12E-146 | dispersed | |
Cmo08g00869 | Cmo-Chr8:5609995 | Cmo12g01271 | Cmo-Chr12:11268328 | 7.88E-105 | dispersed | |
Cmo10g00708 | Cmo-Chr10:3249917 | Cmo12g01271 | Cmo-Chr12:11268328 | 3.08E-103 | dispersed | |
Cmo11g00672 | Cmo-Chr11:3237138 | Cmo12g01271 | Cmo-Chr12:11268328 | 1.63E-99 | dispersed | |
Cmo12g01271 | Cmo-Chr12:11268328 | Cmo14g01778 | Cmo-Chr14:13715371 | 3.02E-139 | dispersed | |
Cmo11g01999 | Cmo-Chr11:13687292 | Cmo12g01271 | Cmo-Chr12:11268328 | 9.01E-128 | transposed | |
Cmo10g00642 | Cmo-Chr10:2945225 | Cmo12g01271 | Cmo-Chr12:11268328 | 0 | wgd | |
Cmo11g00596 | Cmo-Chr11:2873279 | Cmo12g01271 | Cmo-Chr12:11268328 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo12g01271 | - | - | csv:101210261 | 754.977 |