Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo12g01280 | ATGTCAACCCCTACTCCGGCGCCGACGTCTCCGCCGGTTACCAATACTACATCTCCGCCGCCGGTTACTCCCAGTGCGCCGCCGCCATCGACACCTTCGCAGCCGCCACCGGCCGCTACACCTCCACCAACTACCACTCCGCCTGCCGCTGCAACGCCGCCCGCTCCTTCTCAGCCTCCGCCGACATCCGCCCCACCTCCGGCCACTCCCTCTTCACCACCACCGGTTACTCCCCAGCCCACCCCGCCCACTGGCTCTCCCTCGAGGCCATCTCCCTCTCCTCCGCCATCTACTCCCTCAACTTCTCCACCTCCTCCGTCTCCTCCGGGCGGCCACAGTCCGCCTCCTCCGACTTCTCATACGCCGTCCACTCCGTCAAGAAGTCCTCCGCCTCCATCAAGACCGTCATCATCGCCGCCTTCCTCCTCCTCCTCGCCTAATATTTCAACTGGACTTGTCGTCGGAATCGCAATTGGTGGAGTCGTAATTGTTCTTTTGCTAAGTATAATGTGTCTTTGTTGCACGAAGAAGAGGAGAAGACGACGTGATGAAGAAGGATTCTATCCACACCCTCCGTCAGGACCAAAAGTGGACCCTTATGGTGGCCAGCAGCAATGGCAGCACAATGCTCCTCCGCCACCCGATCCATTAATCGGGATGGCGCCTAAGCCATCTCCTCCTCCTGCCGTTGCATCCCGACCCCTGCACTCGCCGACCGGGAGTCGGCCCCCGCCTCCACAGCTTTATATGAGTAGCAGTGGAGGTTCAGGCTCTATGTATTCTGGCTCTGAAAATCCACTCCCTCCGCCCCCGCCACCTCCTATGGCCTTTGGTTTCTCAAAAAGTACTTTCACTTATGAGGAATTGTCAATGGCGACCGATGGATTTTCAGATGCGAATCTCCTCGGACAAGGCGGATTCGGATATGTTCATAGAGGAGTTCTTCCTAATGGCAAGGAAGTTGCAGTCAAGCAGCTGAAAGTCGGGAGCGGGCAAGGCGAACGAGAATTTCAGGCCGAAGTCGATATTATCAGCCGAGTTCATCATAAACATCTTGTTTCTTTGGTTGGATATTGCATAACTGGGTCTCAAAGATTGCTTGTTTATGAGTTTGTTCCAAACAACACTTTGGAGTTTCATTTACATGGTAAAGGGCGACCGACCATGGATTGGCAGACGAGACTTAGAATCGCTTTAGGATCGGCAAAGGGATTAGCTTATCTTCATGAGGATTGTCACCCGAAAATCATTCATCGCGATATTAAAGCTGCTAATATTCTGTTGGATTTCAAGTTTGAAGCAATGGTTGCTGATTTTGGACTTGCAAAGTTTTCTTCTGATGTTAATACCCACGTGTCGACTCGAGTGATGGGTACTTTCGGCTATCTTGCACCGGAGTATGCCTCGAGTGGCAAACTTACTGAGAAGTCGGATGTTTTCTCCTTTGGGGTTATGCTTTTGGAGTTGATCACTGGTCGTCGACCGGTCGATACGAGTAATACTTTCATGGAAGATAGTCTTGTAGACTGGGCCAGGCCGTTACTGAACCGAGCTCTAGAAGATGGAAACTTCGATGCTTTGATCGATCCGAGTATTCAGAACAACTACAACCACACTGAGATGGCTCGTATGATCGAATGTGCTGCTGCTTGCGTGCGACATTCTGCAAGGCGTCGACCTCGAATGAGCCAGGTAGTACGAACGCTCGAAGGAGACGCATCACTATCGGATCTCAACGAAGGAATCAAACCCGGGCAGAGCTCGATGTATAGTTCTCATGGAAGCTCAGACTATGACACCCATCAGTACAACGAGGACTTGAGGAAGTTCAGGAAGATGGCACTGGGAAGCTCGGAGTATGGAGCGAGTAGCGAGTACAGCCGACCGACGAGCGAGTACGGGCTGTATCCGTCGGGGACGAGCAGCGAAGGGCAAACGACTAGAGAAATGGAGATGAGAACAGTGAAGAAAGAGAGTGGAGGCTTCAGTGGAAACAATTGA | 2001 | 52.57 | MSTPTPAPTSPPVTNTTSPPPVTPSAPPPSTPSQPPPAATPPPTTTPPAAATPPAPSQPPPTSAPPPATPSSPPPVTPQPTPPTGSPSRPSPSPPPSTPSTSPPPPSPPGGHSPPPPTSHTPSTPSRSPPPPSRPSSSPPSSSSSPNISTGLVVGIAIGGVVIVLLLSIMCLCCTKKRRRRRDEEGFYPHPPSGPKVDPYGGQQQWQHNAPPPPDPLIGMAPKPSPPPAVASRPLHSPTGSRPPPPQLYMSSSGGSGSMYSGSENPLPPPPPPPMAFGFSKSTFTYEELSMATDGFSDANLLGQGGFGYVHRGVLPNGKEVAVKQLKVGSGQGEREFQAEVDIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGKGRPTMDWQTRLRIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAMVADFGLAKFSSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDTSNTFMEDSLVDWARPLLNRALEDGNFDALIDPSIQNNYNHTEMARMIECAAACVRHSARRRPRMSQVVRTLEGDASLSDLNEGIKPGQSSMYSSHGSSDYDTHQYNEDLRKFRKMALGSSEYGASSEYSRPTSEYGLYPSGTSSEGQTTREMEMRTVKKESGGFSGNN | 666 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 11331888 | 11335872 | + | CmoCh12G012800.1 | Cmo12g01280 | 393968 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo12g01280 | 666 | MobiDBLite | consensus disorder prediction | 620 | 648 | - | - | |
Cmo12g01280 | 666 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 55 | 652 | - | - | |
Cmo12g01280 | 666 | Gene3D | Phosphorylase Kinase; domain 1 | 275 | 371 | - | - | |
Cmo12g01280 | 666 | MobiDBLite | consensus disorder prediction | 246 | 263 | - | - | |
Cmo12g01280 | 666 | MobiDBLite | consensus disorder prediction | 209 | 245 | - | - | |
Cmo12g01280 | 666 | Pfam | Protein tyrosine and serine/threonine kinase | 301 | 569 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo12g01280 | 666 | ProSiteProfiles | Protein kinase domain profile. | 296 | 575 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo12g01280 | 666 | SUPERFAMILY | Protein kinase-like (PK-like) | 271 | 569 | IPR011009 | - | |
Cmo12g01280 | 666 | MobiDBLite | consensus disorder prediction | 580 | 598 | - | - | |
Cmo12g01280 | 666 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 416 | 428 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo12g01280 | 666 | MobiDBLite | consensus disorder prediction | 577 | 600 | - | - | |
Cmo12g01280 | 666 | ProSitePatterns | Protein kinases ATP-binding region signature. | 302 | 324 | IPR017441 | GO:0005524 | |
Cmo12g01280 | 666 | PRINTS | Proline rich extensin signature | 4 | 20 | - | - | |
Cmo12g01280 | 666 | PRINTS | Proline rich extensin signature | 24 | 41 | - | - | |
Cmo12g01280 | 666 | PRINTS | Proline rich extensin signature | 49 | 74 | - | - | |
Cmo12g01280 | 666 | Gene3D | Transferase(Phosphotransferase) domain 1 | 372 | 581 | - | - | |
Cmo12g01280 | 666 | MobiDBLite | consensus disorder prediction | 1 | 139 | - | - | |
Cmo12g01280 | 666 | MobiDBLite | consensus disorder prediction | 180 | 276 | - | - | |
Cmo12g01280 | 666 | MobiDBLite | consensus disorder prediction | 1 | 147 | - | - | |
Cmo12g01280 | 666 | SMART | serkin_6 | 296 | 532 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo12g01280 | 666 | PANTHER | SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED | 55 | 652 | - | - | |
Cmo12g01280 | 666 | MobiDBLite | consensus disorder prediction | 618 | 666 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo10g00657 | Cmo12g01280 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00410 | Cmo-Chr2:2119774 | Cmo12g01280 | Cmo-Chr12:11331888 | 7.32E-142 | dispersed | |
Cmo10g00735 | Cmo-Chr10:3362845 | Cmo12g01280 | Cmo-Chr12:11331888 | 1.13E-99 | dispersed | |
Cmo11g00692 | Cmo-Chr11:3335644 | Cmo12g01280 | Cmo-Chr12:11331888 | 1.06E-89 | dispersed | |
Cmo12g01280 | Cmo-Chr12:11331888 | Cmo15g00209 | Cmo-Chr15:1017698 | 1.21E-163 | dispersed | |
Cmo14g01304 | Cmo-Chr14:10897387 | Cmo12g01280 | Cmo-Chr12:11331888 | 3.98E-99 | dispersed | |
Cmo10g00657 | Cmo-Chr10:3018920 | Cmo12g01280 | Cmo-Chr12:11331888 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74750 | PF07714 | PK_Tyr_Ser-Thr | 2.70E-45 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo12g01280 | - | - | bhj:120079307 | 924.08 |