Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01280 ATGTCAACCCCTACTCCGGCGCCGACGTCTCCGCCGGTTACCAATACTACATCTCCGCCGCCGGTTACTCCCAGTGCGCCGCCGCCATCGACACCTTCGCAGCCGCCACCGGCCGCTACACCTCCACCAACTACCACTCCGCCTGCCGCTGCAACGCCGCCCGCTCCTTCTCAGCCTCCGCCGACATCCGCCCCACCTCCGGCCACTCCCTCTTCACCACCACCGGTTACTCCCCAGCCCACCCCGCCCACTGGCTCTCCCTCGAGGCCATCTCCCTCTCCTCCGCCATCTACTCCCTCAACTTCTCCACCTCCTCCGTCTCCTCCGGGCGGCCACAGTCCGCCTCCTCCGACTTCTCATACGCCGTCCACTCCGTCAAGAAGTCCTCCGCCTCCATCAAGACCGTCATCATCGCCGCCTTCCTCCTCCTCCTCGCCTAATATTTCAACTGGACTTGTCGTCGGAATCGCAATTGGTGGAGTCGTAATTGTTCTTTTGCTAAGTATAATGTGTCTTTGTTGCACGAAGAAGAGGAGAAGACGACGTGATGAAGAAGGATTCTATCCACACCCTCCGTCAGGACCAAAAGTGGACCCTTATGGTGGCCAGCAGCAATGGCAGCACAATGCTCCTCCGCCACCCGATCCATTAATCGGGATGGCGCCTAAGCCATCTCCTCCTCCTGCCGTTGCATCCCGACCCCTGCACTCGCCGACCGGGAGTCGGCCCCCGCCTCCACAGCTTTATATGAGTAGCAGTGGAGGTTCAGGCTCTATGTATTCTGGCTCTGAAAATCCACTCCCTCCGCCCCCGCCACCTCCTATGGCCTTTGGTTTCTCAAAAAGTACTTTCACTTATGAGGAATTGTCAATGGCGACCGATGGATTTTCAGATGCGAATCTCCTCGGACAAGGCGGATTCGGATATGTTCATAGAGGAGTTCTTCCTAATGGCAAGGAAGTTGCAGTCAAGCAGCTGAAAGTCGGGAGCGGGCAAGGCGAACGAGAATTTCAGGCCGAAGTCGATATTATCAGCCGAGTTCATCATAAACATCTTGTTTCTTTGGTTGGATATTGCATAACTGGGTCTCAAAGATTGCTTGTTTATGAGTTTGTTCCAAACAACACTTTGGAGTTTCATTTACATGGTAAAGGGCGACCGACCATGGATTGGCAGACGAGACTTAGAATCGCTTTAGGATCGGCAAAGGGATTAGCTTATCTTCATGAGGATTGTCACCCGAAAATCATTCATCGCGATATTAAAGCTGCTAATATTCTGTTGGATTTCAAGTTTGAAGCAATGGTTGCTGATTTTGGACTTGCAAAGTTTTCTTCTGATGTTAATACCCACGTGTCGACTCGAGTGATGGGTACTTTCGGCTATCTTGCACCGGAGTATGCCTCGAGTGGCAAACTTACTGAGAAGTCGGATGTTTTCTCCTTTGGGGTTATGCTTTTGGAGTTGATCACTGGTCGTCGACCGGTCGATACGAGTAATACTTTCATGGAAGATAGTCTTGTAGACTGGGCCAGGCCGTTACTGAACCGAGCTCTAGAAGATGGAAACTTCGATGCTTTGATCGATCCGAGTATTCAGAACAACTACAACCACACTGAGATGGCTCGTATGATCGAATGTGCTGCTGCTTGCGTGCGACATTCTGCAAGGCGTCGACCTCGAATGAGCCAGGTAGTACGAACGCTCGAAGGAGACGCATCACTATCGGATCTCAACGAAGGAATCAAACCCGGGCAGAGCTCGATGTATAGTTCTCATGGAAGCTCAGACTATGACACCCATCAGTACAACGAGGACTTGAGGAAGTTCAGGAAGATGGCACTGGGAAGCTCGGAGTATGGAGCGAGTAGCGAGTACAGCCGACCGACGAGCGAGTACGGGCTGTATCCGTCGGGGACGAGCAGCGAAGGGCAAACGACTAGAGAAATGGAGATGAGAACAGTGAAGAAAGAGAGTGGAGGCTTCAGTGGAAACAATTGA 2001 52.57 MSTPTPAPTSPPVTNTTSPPPVTPSAPPPSTPSQPPPAATPPPTTTPPAAATPPAPSQPPPTSAPPPATPSSPPPVTPQPTPPTGSPSRPSPSPPPSTPSTSPPPPSPPGGHSPPPPTSHTPSTPSRSPPPPSRPSSSPPSSSSSPNISTGLVVGIAIGGVVIVLLLSIMCLCCTKKRRRRRDEEGFYPHPPSGPKVDPYGGQQQWQHNAPPPPDPLIGMAPKPSPPPAVASRPLHSPTGSRPPPPQLYMSSSGGSGSMYSGSENPLPPPPPPPMAFGFSKSTFTYEELSMATDGFSDANLLGQGGFGYVHRGVLPNGKEVAVKQLKVGSGQGEREFQAEVDIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGKGRPTMDWQTRLRIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAMVADFGLAKFSSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDTSNTFMEDSLVDWARPLLNRALEDGNFDALIDPSIQNNYNHTEMARMIECAAACVRHSARRRPRMSQVVRTLEGDASLSDLNEGIKPGQSSMYSSHGSSDYDTHQYNEDLRKFRKMALGSSEYGASSEYSRPTSEYGLYPSGTSSEGQTTREMEMRTVKKESGGFSGNN 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11331888 11335872 + CmoCh12G012800.1 Cmo12g01280 393968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01280 666 MobiDBLite consensus disorder prediction 620 648 - -
Cmo12g01280 666 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 55 652 - -
Cmo12g01280 666 Gene3D Phosphorylase Kinase; domain 1 275 371 - -
Cmo12g01280 666 MobiDBLite consensus disorder prediction 246 263 - -
Cmo12g01280 666 MobiDBLite consensus disorder prediction 209 245 - -
Cmo12g01280 666 Pfam Protein tyrosine and serine/threonine kinase 301 569 IPR001245 GO:0004672|GO:0006468
Cmo12g01280 666 ProSiteProfiles Protein kinase domain profile. 296 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01280 666 SUPERFAMILY Protein kinase-like (PK-like) 271 569 IPR011009 -
Cmo12g01280 666 MobiDBLite consensus disorder prediction 580 598 - -
Cmo12g01280 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Cmo12g01280 666 MobiDBLite consensus disorder prediction 577 600 - -
Cmo12g01280 666 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524
Cmo12g01280 666 PRINTS Proline rich extensin signature 4 20 - -
Cmo12g01280 666 PRINTS Proline rich extensin signature 24 41 - -
Cmo12g01280 666 PRINTS Proline rich extensin signature 49 74 - -
Cmo12g01280 666 Gene3D Transferase(Phosphotransferase) domain 1 372 581 - -
Cmo12g01280 666 MobiDBLite consensus disorder prediction 1 139 - -
Cmo12g01280 666 MobiDBLite consensus disorder prediction 180 276 - -
Cmo12g01280 666 MobiDBLite consensus disorder prediction 1 147 - -
Cmo12g01280 666 SMART serkin_6 296 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01280 666 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 55 652 - -
Cmo12g01280 666 MobiDBLite consensus disorder prediction 618 666 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00657 Cmo12g01280 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00410 Cmo-Chr2:2119774 Cmo12g01280 Cmo-Chr12:11331888 7.32E-142 dispersed
Cmo10g00735 Cmo-Chr10:3362845 Cmo12g01280 Cmo-Chr12:11331888 1.13E-99 dispersed
Cmo11g00692 Cmo-Chr11:3335644 Cmo12g01280 Cmo-Chr12:11331888 1.06E-89 dispersed
Cmo12g01280 Cmo-Chr12:11331888 Cmo15g00209 Cmo-Chr15:1017698 1.21E-163 dispersed
Cmo14g01304 Cmo-Chr14:10897387 Cmo12g01280 Cmo-Chr12:11331888 3.98E-99 dispersed
Cmo10g00657 Cmo-Chr10:3018920 Cmo12g01280 Cmo-Chr12:11331888 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74750 PF07714 PK_Tyr_Ser-Thr 2.70E-45 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01280 - - bhj:120079307 924.08