Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01289 ATGGAATCTCCATCGGCCAAGAGCTGGAGCATCCACACTCGGCCGGACATCATCCGGAAGTACCAGATCCTCGAGCGTATCGGATCCGGCGCATATTCCGATGTTCACCGTGCACGGCGGCTCTCCGACGGCGTCATCGTCGCTTTGAAGGAGATCCACGATTATCAATCGGCGTTCCGCGAAATCGAGGCGCTCCAAATCCTTCAAGGTTCGCCTAATATTGTCGTTCTGCATGAGTACTTTTGGCGCGAGGATGAGGATGCTGTGCTTGTTCTTGAGTTTCTGAAGACGGATTTGGCCACCGTTATAGCGGAGGCGAAGAAGCGAGGATCGGGCGGTGGAGAATCCGGGTGGAGGCTCGCGGTCGATGAGGTGAAGCGATGGATGATCCAGATTTTGAGTGGTCTTGATGCTTGTCATAGAAATATGATCGTGCATAGGGATTTGAAACCGAGCAATTTGTTGATCGCCGACGATGGCGTGCTCAAACTTGCCGATTTTGGACAGGCAAGAATATTGATGGAGCCAGAATTTGATGAATCCAATGAGATGAATTCTTCTGATCAAGTACCTGCAATTTCTCAGCCACCTGCAATTTTTTCAGGAACAGAAAGTTCGGTTCGAGAAGGAAACAGAACTGAAGAACAAGAACCAATTAGCAAAGAGGAGTATTTTAGAGCTTTAGACGAGCTGAAAGCAAAAAGTTCAGAAACTGAATTTGATAAGGAAACATGTACTTATGATGGAGATACGTCTTGCATAGCAACATGTACCACGAGTGATCTCGAAGAGGATCCATTTAAAGGTTCATCATATTCTTATGAAATGGAAGGGGGAGTTCCAGCAGATGATGGACAGGGTTCTCTCACTTCTTGCGTCGGAACTCGCTGGTTCAGGGCCCCCGAATTACTCTATGGCTCTACGAACTACGGTTTGGAGATCGACTTATGGTCGTTGGGTTGCATTTTTGCAGAACTTTTTACATTGGAACCACTTTTTCCAGGAACTGCTGACATTGATCAAATGAGCAGAATTTTCACTACTCTAGGCAACTTGACTGAAGATTCTTGGCCAGGTTGTTCCAAACTTCCAGATTTTCAGATCATATCATTCAACAACATAGACAAGCCTATTGGCCTCGAAGCATGTCTTCCCAACCGATCTCCTGATGAAATTTCCATCGTTAAAAGACTTCTTTGCTACGACCCGTCTAATCGGGCGACAGCCATGGAATTGCTCCAAGACAAGTATTTCACTGATGAGCCACTTCCTGTTCCCCTGTCTGAGCTTCATATTCCTTCAACCAGAACTGGACAGGATCTGGATTCCCCTGCAGGATGGTACAACAACAATGACTCAGACTCCGATATGGACGTACTCGGCCCCTTGAACGTTACCACAAGGGCCACTCGTTACTCCGTACAATATGATTGA 1434 46.86 MESPSAKSWSIHTRPDIIRKYQILERIGSGAYSDVHRARRLSDGVIVALKEIHDYQSAFREIEALQILQGSPNIVVLHEYFWREDEDAVLVLEFLKTDLATVIAEAKKRGSGGGESGWRLAVDEVKRWMIQILSGLDACHRNMIVHRDLKPSNLLIADDGVLKLADFGQARILMEPEFDESNEMNSSDQVPAISQPPAIFSGTESSVREGNRTEEQEPISKEEYFRALDELKAKSSETEFDKETCTYDGDTSCIATCTTSDLEEDPFKGSSYSYEMEGGVPADDGQGSLTSCVGTRWFRAPELLYGSTNYGLEIDLWSLGCIFAELFTLEPLFPGTADIDQMSRIFTTLGNLTEDSWPGCSKLPDFQIISFNNIDKPIGLEACLPNRSPDEISIVKRLLCYDPSNRATAMELLQDKYFTDEPLPVPLSELHIPSTRTGQDLDSPAGWYNNNDSDSDMDVLGPLNVTTRATRYSVQYD 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11372165 11374157 - CmoCh12G012890.1 Cmo12g01289 393977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01289 477 MobiDBLite consensus disorder prediction 183 207 - -
Cmo12g01289 477 Gene3D Phosphorylase Kinase; domain 1 13 111 - -
Cmo12g01289 477 PANTHER CELL DIVISION PROTEIN KINASE 18 437 - -
Cmo12g01289 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Cmo12g01289 477 ProSiteProfiles Protein kinase domain profile. 21 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01289 477 Gene3D Transferase(Phosphotransferase) domain 1 114 238 - -
Cmo12g01289 477 MobiDBLite consensus disorder prediction 434 453 - -
Cmo12g01289 477 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Cmo12g01289 477 SUPERFAMILY Protein kinase-like (PK-like) 8 434 IPR011009 -
Cmo12g01289 477 SMART serkin_6 21 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01289 477 PANTHER CYCLIN-DEPENDENT KINASE 10 18 437 - -
Cmo12g01289 477 MobiDBLite consensus disorder prediction 181 218 - -
Cmo12g01289 477 Gene3D Transferase(Phosphotransferase) domain 1 259 425 - -
Cmo12g01289 477 Pfam Protein kinase domain 21 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01289 477 Pfam Protein kinase domain 286 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g01355 Cmo12g01289 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01289 Cmo-Chr12:11372165 Cmo11g01276 Cmo-Chr11:8399050 1.05E-36 dispersed
Cmo12g01289 Cmo-Chr12:11372165 Cmo05g01355 Cmo-Chr5:10504040 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74751 PF00069 Pkinase 1.70E-31 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01289 - - cmax:111465522 952.199