Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo12g01289 | ATGGAATCTCCATCGGCCAAGAGCTGGAGCATCCACACTCGGCCGGACATCATCCGGAAGTACCAGATCCTCGAGCGTATCGGATCCGGCGCATATTCCGATGTTCACCGTGCACGGCGGCTCTCCGACGGCGTCATCGTCGCTTTGAAGGAGATCCACGATTATCAATCGGCGTTCCGCGAAATCGAGGCGCTCCAAATCCTTCAAGGTTCGCCTAATATTGTCGTTCTGCATGAGTACTTTTGGCGCGAGGATGAGGATGCTGTGCTTGTTCTTGAGTTTCTGAAGACGGATTTGGCCACCGTTATAGCGGAGGCGAAGAAGCGAGGATCGGGCGGTGGAGAATCCGGGTGGAGGCTCGCGGTCGATGAGGTGAAGCGATGGATGATCCAGATTTTGAGTGGTCTTGATGCTTGTCATAGAAATATGATCGTGCATAGGGATTTGAAACCGAGCAATTTGTTGATCGCCGACGATGGCGTGCTCAAACTTGCCGATTTTGGACAGGCAAGAATATTGATGGAGCCAGAATTTGATGAATCCAATGAGATGAATTCTTCTGATCAAGTACCTGCAATTTCTCAGCCACCTGCAATTTTTTCAGGAACAGAAAGTTCGGTTCGAGAAGGAAACAGAACTGAAGAACAAGAACCAATTAGCAAAGAGGAGTATTTTAGAGCTTTAGACGAGCTGAAAGCAAAAAGTTCAGAAACTGAATTTGATAAGGAAACATGTACTTATGATGGAGATACGTCTTGCATAGCAACATGTACCACGAGTGATCTCGAAGAGGATCCATTTAAAGGTTCATCATATTCTTATGAAATGGAAGGGGGAGTTCCAGCAGATGATGGACAGGGTTCTCTCACTTCTTGCGTCGGAACTCGCTGGTTCAGGGCCCCCGAATTACTCTATGGCTCTACGAACTACGGTTTGGAGATCGACTTATGGTCGTTGGGTTGCATTTTTGCAGAACTTTTTACATTGGAACCACTTTTTCCAGGAACTGCTGACATTGATCAAATGAGCAGAATTTTCACTACTCTAGGCAACTTGACTGAAGATTCTTGGCCAGGTTGTTCCAAACTTCCAGATTTTCAGATCATATCATTCAACAACATAGACAAGCCTATTGGCCTCGAAGCATGTCTTCCCAACCGATCTCCTGATGAAATTTCCATCGTTAAAAGACTTCTTTGCTACGACCCGTCTAATCGGGCGACAGCCATGGAATTGCTCCAAGACAAGTATTTCACTGATGAGCCACTTCCTGTTCCCCTGTCTGAGCTTCATATTCCTTCAACCAGAACTGGACAGGATCTGGATTCCCCTGCAGGATGGTACAACAACAATGACTCAGACTCCGATATGGACGTACTCGGCCCCTTGAACGTTACCACAAGGGCCACTCGTTACTCCGTACAATATGATTGA | 1434 | 46.86 | MESPSAKSWSIHTRPDIIRKYQILERIGSGAYSDVHRARRLSDGVIVALKEIHDYQSAFREIEALQILQGSPNIVVLHEYFWREDEDAVLVLEFLKTDLATVIAEAKKRGSGGGESGWRLAVDEVKRWMIQILSGLDACHRNMIVHRDLKPSNLLIADDGVLKLADFGQARILMEPEFDESNEMNSSDQVPAISQPPAIFSGTESSVREGNRTEEQEPISKEEYFRALDELKAKSSETEFDKETCTYDGDTSCIATCTTSDLEEDPFKGSSYSYEMEGGVPADDGQGSLTSCVGTRWFRAPELLYGSTNYGLEIDLWSLGCIFAELFTLEPLFPGTADIDQMSRIFTTLGNLTEDSWPGCSKLPDFQIISFNNIDKPIGLEACLPNRSPDEISIVKRLLCYDPSNRATAMELLQDKYFTDEPLPVPLSELHIPSTRTGQDLDSPAGWYNNNDSDSDMDVLGPLNVTTRATRYSVQYD | 477 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 11372165 | 11374157 | - | CmoCh12G012890.1 | Cmo12g01289 | 393977 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo12g01289 | 477 | MobiDBLite | consensus disorder prediction | 183 | 207 | - | - | |
Cmo12g01289 | 477 | Gene3D | Phosphorylase Kinase; domain 1 | 13 | 111 | - | - | |
Cmo12g01289 | 477 | PANTHER | CELL DIVISION PROTEIN KINASE | 18 | 437 | - | - | |
Cmo12g01289 | 477 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 144 | 156 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo12g01289 | 477 | ProSiteProfiles | Protein kinase domain profile. | 21 | 418 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo12g01289 | 477 | Gene3D | Transferase(Phosphotransferase) domain 1 | 114 | 238 | - | - | |
Cmo12g01289 | 477 | MobiDBLite | consensus disorder prediction | 434 | 453 | - | - | |
Cmo12g01289 | 477 | ProSitePatterns | Protein kinases ATP-binding region signature. | 27 | 50 | IPR017441 | GO:0005524 | |
Cmo12g01289 | 477 | SUPERFAMILY | Protein kinase-like (PK-like) | 8 | 434 | IPR011009 | - | |
Cmo12g01289 | 477 | SMART | serkin_6 | 21 | 418 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo12g01289 | 477 | PANTHER | CYCLIN-DEPENDENT KINASE 10 | 18 | 437 | - | - | |
Cmo12g01289 | 477 | MobiDBLite | consensus disorder prediction | 181 | 218 | - | - | |
Cmo12g01289 | 477 | Gene3D | Transferase(Phosphotransferase) domain 1 | 259 | 425 | - | - | |
Cmo12g01289 | 477 | Pfam | Protein kinase domain | 21 | 177 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo12g01289 | 477 | Pfam | Protein kinase domain | 286 | 418 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo05g01355 | Cmo12g01289 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo12g01289 | Cmo-Chr12:11372165 | Cmo11g01276 | Cmo-Chr11:8399050 | 1.05E-36 | dispersed | |
Cmo12g01289 | Cmo-Chr12:11372165 | Cmo05g01355 | Cmo-Chr5:10504040 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74751 | PF00069 | Pkinase | 1.70E-31 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo12g01289 | - | - | cmax:111465522 | 952.199 |