Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo12g01298 | ATGGCCAACGCCACCGTGCCGGAGACCGACTTGGGTGGCGTAAATTCTTCGCCGTCGTCTTCGTCCTCCTCGTCTCGGCCCAAACAAGGCGGTACCCAATTGAAGCGCGGGCGAGAAAATAGCAGCAGCAGCAGCAACGACAACAATCGACACCCAATTTACCGCGGCGTCCGAATGAGGGTGTGGGGCAAATGGGTGTCGGAAATTCGAGAGCCAAAGAAGAAGAGTAGGATCTGGCTAGGCACTTTCGCGACGCCTGAAATGGCGGCGCGTGCTCATGACGTCGCCGCACTTACCATCAAAGGCAACTCGGCTATCCTCAATTTCCCTGAACTCGCCGCCTCATTCCCCCGCCCCGTCTCCTCCTCCCCCCGCGACGTTCAATTCGCAGCCGGCCTCGCCGCCTCAATGCAACTCCCCAACGTCGACCCTCCTCCACCCCCTCCGCCGTTATCTCCATCCTCTCAGTCGCCGTCGCCTCCGCTTTCATCGTCATCTGAGTTGGACGAGTCGACGCCGGAGGAACTGAGTGAAATCGTGAAGCTGCCGAGTTTGGGGACGAGTTACGAGGAATCGGGCGAGTTCGTGTGTGACGAGTGGCAGTATAGTTGTGGGCCATGGTATCAAAATCAAAGCAGAAGGGAAGAAGAAGAAGAAGAAGCTTATGAGTACTTTAGAGATCAAATGGTAATGGCGGAAACAGAGTGTGTGATTCCCGCTTCATTTCAACCTTTACCTTTCTCGTGGTAA | 750 | 55.87 | MANATVPETDLGGVNSSPSSSSSSSRPKQGGTQLKRGRENSSSSSNDNNRHPIYRGVRMRVWGKWVSEIREPKKKSRIWLGTFATPEMAARAHDVAALTIKGNSAILNFPELAASFPRPVSSSPRDVQFAAGLAASMQLPNVDPPPPPPPLSPSSQSPSPPLSSSSELDESTPEELSEIVKLPSLGTSYEESGEFVCDEWQYSCGPWYQNQSRREEEEEEAYEYFRDQMVMAETECVIPASFQPLPFSW | 249 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 11419240 | 11419989 | + | CmoCh12G012980.1 | Cmo12g01298 | 393986 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo12g01298 | 249 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
Cmo12g01298 | 249 | ProSiteProfiles | AP2/ERF domain profile. | 53 | 110 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo12g01298 | 249 | PRINTS | Ethylene responsive element binding protein signature | 54 | 65 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo12g01298 | 249 | PRINTS | Ethylene responsive element binding protein signature | 76 | 92 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo12g01298 | 249 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 17 | 233 | - | - | |
Cmo12g01298 | 249 | MobiDBLite | consensus disorder prediction | 137 | 176 | - | - | |
Cmo12g01298 | 249 | CDD | AP2 | 52 | 112 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo12g01298 | 249 | SUPERFAMILY | DNA-binding domain | 53 | 111 | IPR016177 | GO:0003677 | |
Cmo12g01298 | 249 | MobiDBLite | consensus disorder prediction | 140 | 157 | - | - | |
Cmo12g01298 | 249 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Cmo12g01298 | 249 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE | 17 | 233 | - | - | |
Cmo12g01298 | 249 | Pfam | AP2 domain | 52 | 102 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo12g01298 | 249 | SMART | rav1_2 | 53 | 116 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo12g01298 | 249 | Gene3D | AP2/ERF domain | 53 | 111 | IPR036955 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00816 | Cmo-Chr6:4423340 | Cmo12g01298 | Cmo-Chr12:11419240 | 1.61E-44 | dispersed | |
Cmo09g01204 | Cmo-Chr9:9111892 | Cmo12g01298 | Cmo-Chr12:11419240 | 2.28E-27 | dispersed | |
Cmo09g01277 | Cmo-Chr9:11275482 | Cmo12g01298 | Cmo-Chr12:11419240 | 1.92E-32 | dispersed | |
Cmo12g00206 | Cmo-Chr12:1361052 | Cmo12g01298 | Cmo-Chr12:11419240 | 3.34E-50 | dispersed | |
Cmo12g01298 | Cmo-Chr12:11419240 | Cmo16g01177 | Cmo-Chr16:8390470 | 4.78E-42 | dispersed | |
Cmo01g00102 | Cmo-Chr1:461579 | Cmo12g01298 | Cmo-Chr12:11419240 | 4.03E-40 | wgd | |
Cmo10g00689 | Cmo-Chr10:3142161 | Cmo12g01298 | Cmo-Chr12:11419240 | 1.25E-62 | wgd | |
Cmo11g00649 | Cmo-Chr11:3103445 | Cmo12g01298 | Cmo-Chr12:11419240 | 7.46E-63 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10787 | PF00847 | AP2 | 4.30E-13 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo12g01298 | K09286 | - | csv:101212945 | 289.271 |