Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01298 ATGGCCAACGCCACCGTGCCGGAGACCGACTTGGGTGGCGTAAATTCTTCGCCGTCGTCTTCGTCCTCCTCGTCTCGGCCCAAACAAGGCGGTACCCAATTGAAGCGCGGGCGAGAAAATAGCAGCAGCAGCAGCAACGACAACAATCGACACCCAATTTACCGCGGCGTCCGAATGAGGGTGTGGGGCAAATGGGTGTCGGAAATTCGAGAGCCAAAGAAGAAGAGTAGGATCTGGCTAGGCACTTTCGCGACGCCTGAAATGGCGGCGCGTGCTCATGACGTCGCCGCACTTACCATCAAAGGCAACTCGGCTATCCTCAATTTCCCTGAACTCGCCGCCTCATTCCCCCGCCCCGTCTCCTCCTCCCCCCGCGACGTTCAATTCGCAGCCGGCCTCGCCGCCTCAATGCAACTCCCCAACGTCGACCCTCCTCCACCCCCTCCGCCGTTATCTCCATCCTCTCAGTCGCCGTCGCCTCCGCTTTCATCGTCATCTGAGTTGGACGAGTCGACGCCGGAGGAACTGAGTGAAATCGTGAAGCTGCCGAGTTTGGGGACGAGTTACGAGGAATCGGGCGAGTTCGTGTGTGACGAGTGGCAGTATAGTTGTGGGCCATGGTATCAAAATCAAAGCAGAAGGGAAGAAGAAGAAGAAGAAGCTTATGAGTACTTTAGAGATCAAATGGTAATGGCGGAAACAGAGTGTGTGATTCCCGCTTCATTTCAACCTTTACCTTTCTCGTGGTAA 750 55.87 MANATVPETDLGGVNSSPSSSSSSSRPKQGGTQLKRGRENSSSSSNDNNRHPIYRGVRMRVWGKWVSEIREPKKKSRIWLGTFATPEMAARAHDVAALTIKGNSAILNFPELAASFPRPVSSSPRDVQFAAGLAASMQLPNVDPPPPPPPLSPSSQSPSPPLSSSSELDESTPEELSEIVKLPSLGTSYEESGEFVCDEWQYSCGPWYQNQSRREEEEEEAYEYFRDQMVMAETECVIPASFQPLPFSW 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11419240 11419989 + CmoCh12G012980.1 Cmo12g01298 393986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01298 249 MobiDBLite consensus disorder prediction 1 52 - -
Cmo12g01298 249 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Cmo12g01298 249 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Cmo12g01298 249 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Cmo12g01298 249 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 233 - -
Cmo12g01298 249 MobiDBLite consensus disorder prediction 137 176 - -
Cmo12g01298 249 CDD AP2 52 112 IPR001471 GO:0003700|GO:0006355
Cmo12g01298 249 SUPERFAMILY DNA-binding domain 53 111 IPR016177 GO:0003677
Cmo12g01298 249 MobiDBLite consensus disorder prediction 140 157 - -
Cmo12g01298 249 MobiDBLite consensus disorder prediction 1 51 - -
Cmo12g01298 249 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 17 233 - -
Cmo12g01298 249 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
Cmo12g01298 249 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Cmo12g01298 249 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00816 Cmo-Chr6:4423340 Cmo12g01298 Cmo-Chr12:11419240 1.61E-44 dispersed
Cmo09g01204 Cmo-Chr9:9111892 Cmo12g01298 Cmo-Chr12:11419240 2.28E-27 dispersed
Cmo09g01277 Cmo-Chr9:11275482 Cmo12g01298 Cmo-Chr12:11419240 1.92E-32 dispersed
Cmo12g00206 Cmo-Chr12:1361052 Cmo12g01298 Cmo-Chr12:11419240 3.34E-50 dispersed
Cmo12g01298 Cmo-Chr12:11419240 Cmo16g01177 Cmo-Chr16:8390470 4.78E-42 dispersed
Cmo01g00102 Cmo-Chr1:461579 Cmo12g01298 Cmo-Chr12:11419240 4.03E-40 wgd
Cmo10g00689 Cmo-Chr10:3142161 Cmo12g01298 Cmo-Chr12:11419240 1.25E-62 wgd
Cmo11g00649 Cmo-Chr11:3103445 Cmo12g01298 Cmo-Chr12:11419240 7.46E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10787 PF00847 AP2 4.30E-13 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01298 K09286 - csv:101212945 289.271