Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01309 ATGTCGTGGCAAACGTATGTTGATGATCATTTGATGTGCGACATTGATGGCCAAGGCCAGCACCTCACTGCCGCTGCCATTATCGGCCACGATGGTAGCGTCTGGGCTCAGAGCGCCGCATTTCCTCAGTGCAAGCCTCAAGAGATCACTGGTATCATGAAGGATTTTGATGAACCAGGGCATCTTGCACCTACTGGATTACATATTGCAGGCACAAAGTACATGGTAATCCAAGGAGAGCCTGGAGCGGTCATCCGTGGAAAGAAGGGTTCTGGAGGAATTACCATAAAGAAGACTGGTCAAGCTCTAGTTTTTGGCCTCTATGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTCGTTGAGAGGCTGGGCGATTACCTCGTCGATCAGGGTCTGGAGGAGATTATATTTGGAGCTCATTTCGTCGGTGGTGATAAATTGTATCCCCTCTCACTCGATTCAACGCAGAAACGAGCGAGCAAGGAAGGGAAAAAAAAAAAAAAAAAAAAACTCTTCAGAGATCGAACCAGAAGAAAGAGGAAGAAGAAGCGGAGAACGATGTCGTGGAGTGTTTACGTCGATGATCATCTTATGTGCGACATTGAGGGCAATCACCTCACATCTGCGGCCATTATCGGCCATGACGGCAGCGTTTGGGCCCAAAGCAATACTTTCCCTCAGTTCAAGCCTGATGAAATTACTGCCATCATGAATGACTTCAATGAACCCGGGGTGCTTGCTCCAACTGGTTTGTACCTTGGTGGTGCAAAATATATGGTAATCCAAGGGGAGCCTGGATATGTTATTCGTGGGAAGAAGGGCCCAGGTGGGGTTACTGTTAAGAAGACTGGTATGGCTCTAATCGTTGGCATCTATGATGAACCGATGACTCCCGGTCAGTGCAATATGATTGTTGAAAGGCTTGGAGATTATCTCATCGAACAGGGATTGATGCTTGTGTTTCTCGTTATTAGTGTTGTCTCTTTCACCTTTTACCTTGAAATATTGTGGTGGTTTTCAAGTGAGGTCTATGTCGTAGTTACAGTGACTTCGAAATGTATGTTGTAA 1071 46.41 MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSAAFPQCKPQEITGIMKDFDEPGHLAPTGLHIAGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGLYEEPVTPGQCNMVVERLGDYLVDQGLEEIIFGAHFVGGDKLYPLSLDSTQKRASKEGKKKKKKKLFRDRTRRKRKKKRRTMSWSVYVDDHLMCDIEGNHLTSAAIIGHDGSVWAQSNTFPQFKPDEITAIMNDFNEPGVLAPTGLYLGGAKYMVIQGEPGYVIRGKKGPGGVTVKKTGMALIVGIYDEPMTPGQCNMIVERLGDYLIEQGLMLVFLVISVVSFTFYLEILWWFSSEVYVVVTVTSKCML 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11468872 11473409 + CmoCh12G013090.1 Cmo12g01309 393997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01309 356 SMART prof_2 188 318 IPR005455 GO:0003779
Cmo12g01309 356 SMART prof_2 1 133 IPR005455 GO:0003779
Cmo12g01309 356 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Cmo12g01309 356 Pfam Profilin 188 317 IPR005455 GO:0003779
Cmo12g01309 356 Pfam Profilin 1 132 IPR005455 GO:0003779
Cmo12g01309 356 PANTHER PROFILIN 188 318 - -
Cmo12g01309 356 PANTHER PROFILIN 188 318 IPR005455 GO:0003779
Cmo12g01309 356 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Cmo12g01309 356 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Cmo12g01309 356 PRINTS Profilin signature 23 32 IPR005455 GO:0003779
Cmo12g01309 356 PRINTS Profilin signature 115 132 IPR005455 GO:0003779
Cmo12g01309 356 PRINTS Profilin signature 66 80 IPR005455 GO:0003779
Cmo12g01309 356 PRINTS Profilin signature 42 62 IPR005455 GO:0003779
Cmo12g01309 356 PRINTS Profilin signature 102 115 IPR005455 GO:0003779
Cmo12g01309 356 PANTHER PROFILIN 1 133 IPR005455 GO:0003779
Cmo12g01309 356 PANTHER PROFILIN 1 133 - -
Cmo12g01309 356 CDD PROF 189 317 IPR005455 GO:0003779
Cmo12g01309 356 Gene3D Dynein light chain 2a, cytoplasmic 186 318 - -
Cmo12g01309 356 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Cmo12g01309 356 MobiDBLite consensus disorder prediction 159 186 - -
Cmo12g01309 356 SUPERFAMILY Profilin (actin-binding protein) 189 317 IPR036140 -
Cmo12g01309 356 MobiDBLite consensus disorder prediction 162 186 - -
Cmo12g01309 356 CDD PROF 2 132 IPR005455 GO:0003779
Cmo12g01309 356 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Cmo12g01309 356 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779
Cmo12g01309 356 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779
Cmo12g01309 356 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779
Cmo12g01309 356 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779
Cmo12g01309 356 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779
Cmo12g01309 356 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g01377 Cmo12g01309 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00092 Cmo-Chr1:420219 Cmo12g01309 Cmo-Chr12:11468872 1.20E-67 dispersed
Cmo05g01378 Cmo-Chr5:10673657 Cmo12g01309 Cmo-Chr12:11468872 6.86E-73 dispersed
Cmo08g00707 Cmo-Chr8:4469155 Cmo12g01309 Cmo-Chr12:11468872 4.59E-77 dispersed
Cmo12g01309 Cmo-Chr12:11468872 Cmo17g00727 Cmo-Chr17:7272105 1.74E-74 dispersed
Cmo12g01309 Cmo-Chr12:11468872 Cmo14g01321 Cmo-Chr14:11035489 7.07E-68 wgd
Cmo12g01309 Cmo-Chr12:11468872 Cmo05g01377 Cmo-Chr5:10670019 1.17E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01309 K05759 - twl:119992955 256.529