Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01310 ATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTTCCCGCTCAAGAAACTTCTATCCGTTCTTTTCTAACTGCGAGCGGAACATTTCACGATGGCAATCTGCTTTTGAACCAGAAAGGATTGCGGCTTGTATCTGAAGAGAAAGAAACGCAGTTTTTGATGTATATCAATGTAATCGGAATTAGTGAAAACCCGCCAAACCTAGCCATCCGTACTTCAGACTGCAAGGAGGTTGATGTCGATTTCTCATTGGAGGATCTAGAGACTGTGAAAGTCATCGGGAAAGGAAGTGGAGGTGTAGTACAACTTGTTCAACACAAATGGGTTGGAAAACTTTTTGCCTTAAAGGTGATCCAAATGAACATACAAGAGGATATCCGTAAACAGATAGTGCAGGAACTGAAAATAAACCAAGCAGCACAATGTCCACATATTGTGGTCTGCCACCATTCTTTCTACCACAATGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGTGGTTCTTTAGCTGATGTTGTCAGACAATTGTTTGCAAACAGGTCTCAGGATTCTGTCAATAAAAAACTAAATGAAAAGGTTAAGTTTTCCCTCATGCTCACTCACTTCATAATTCCAGGTCTTGTTTACTTGCATCATGAGAGACATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTGAACCATAAAGGGGATGTCAAAATCACTGATTTTGGAGTAAGTGCAATGCTTGCAAGTTCTATGGGTCAGAGAGATACATTTGTTGGGACTTACAATTACATGTCGCCTGAGCGAATTAGCGGGGGAACATATGACTACAGCAGTGATATATGGAGCTTGGGTCTGGTAGTACTTGAATGTGCCATTGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTTTTAGAGGCCATTGTAGCAAAGCCACCGCCTTCTGCTCCATCGGATCAATTTTCCCCCGACATTAAGAAGGACCCTAAAGAAAGATCATCTTCATTAGATCTTCTGAATCACCCTTTCATCAAGAAATTCGAGGACAAAGACATCGATGTTGGGATTCTCGTTGGCAGCTTGGATCCTCCTGTAAGTTTTCCTAGATAA 1137 41.86 MKTKTPLKQLKLSVPAQETSIRSFLTASGTFHDGNLLLNQKGLRLVSEEKETQFLMYINVIGISENPPNLAIRTSDCKEVDVDFSLEDLETVKVIGKGSGGVVQLVQHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCHHSFYHNGAISLVLEYMDRGSLADVVRQLFANRSQDSVNKKLNEKVKFSLMLTHFIIPGLVYLHHERHVIHRDIKPSNLLVNHKGDVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPSDQFSPDIKKDPKERSSSLDLLNHPFIKKFEDKDIDVGILVGSLDPPVSFPR 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11475316 11478428 + CmoCh12G013100.1 Cmo12g01310 393998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01310 378 Gene3D Phosphorylase Kinase; domain 1 62 168 - -
Cmo12g01310 378 MobiDBLite consensus disorder prediction 322 342 - -
Cmo12g01310 378 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 377 - -
Cmo12g01310 378 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 1 377 - -
Cmo12g01310 378 Pfam Protein kinase domain 90 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01310 378 Gene3D Transferase(Phosphotransferase) domain 1 170 367 - -
Cmo12g01310 378 ProSiteProfiles Protein kinase domain profile. 89 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01310 378 SMART serkin_6 89 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01310 378 ProSitePatterns Protein kinases ATP-binding region signature. 95 118 IPR017441 GO:0005524
Cmo12g01310 378 CDD PKc_MAPKK_plant_like 87 357 - -
Cmo12g01310 378 SUPERFAMILY Protein kinase-like (PK-like) 81 357 IPR011009 -
Cmo12g01310 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01376 Cmo-Chr5:10666100 Cmo12g01310 Cmo-Chr12:11475316 0 dispersed
Cmo12g01310 Cmo-Chr12:11475316 Cmo12g01353 Cmo-Chr12:11669407 9.59E-112 dispersed
Cmo12g01310 Cmo-Chr12:11475316 Cmo10g00767 Cmo-Chr10:3558589 1.85E-135 transposed
Cmo12g01310 Cmo-Chr12:11475316 Cmo11g00726 Cmo-Chr11:3514026 2.24E-135 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74753 PF00069 Pkinase 4.20E-53 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01310 K04368 - csv:101218848 599.742