Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo12g01310 | ATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTTCCCGCTCAAGAAACTTCTATCCGTTCTTTTCTAACTGCGAGCGGAACATTTCACGATGGCAATCTGCTTTTGAACCAGAAAGGATTGCGGCTTGTATCTGAAGAGAAAGAAACGCAGTTTTTGATGTATATCAATGTAATCGGAATTAGTGAAAACCCGCCAAACCTAGCCATCCGTACTTCAGACTGCAAGGAGGTTGATGTCGATTTCTCATTGGAGGATCTAGAGACTGTGAAAGTCATCGGGAAAGGAAGTGGAGGTGTAGTACAACTTGTTCAACACAAATGGGTTGGAAAACTTTTTGCCTTAAAGGTGATCCAAATGAACATACAAGAGGATATCCGTAAACAGATAGTGCAGGAACTGAAAATAAACCAAGCAGCACAATGTCCACATATTGTGGTCTGCCACCATTCTTTCTACCACAATGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGTGGTTCTTTAGCTGATGTTGTCAGACAATTGTTTGCAAACAGGTCTCAGGATTCTGTCAATAAAAAACTAAATGAAAAGGTTAAGTTTTCCCTCATGCTCACTCACTTCATAATTCCAGGTCTTGTTTACTTGCATCATGAGAGACATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTGAACCATAAAGGGGATGTCAAAATCACTGATTTTGGAGTAAGTGCAATGCTTGCAAGTTCTATGGGTCAGAGAGATACATTTGTTGGGACTTACAATTACATGTCGCCTGAGCGAATTAGCGGGGGAACATATGACTACAGCAGTGATATATGGAGCTTGGGTCTGGTAGTACTTGAATGTGCCATTGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTTTTAGAGGCCATTGTAGCAAAGCCACCGCCTTCTGCTCCATCGGATCAATTTTCCCCCGACATTAAGAAGGACCCTAAAGAAAGATCATCTTCATTAGATCTTCTGAATCACCCTTTCATCAAGAAATTCGAGGACAAAGACATCGATGTTGGGATTCTCGTTGGCAGCTTGGATCCTCCTGTAAGTTTTCCTAGATAA | 1137 | 41.86 | MKTKTPLKQLKLSVPAQETSIRSFLTASGTFHDGNLLLNQKGLRLVSEEKETQFLMYINVIGISENPPNLAIRTSDCKEVDVDFSLEDLETVKVIGKGSGGVVQLVQHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCHHSFYHNGAISLVLEYMDRGSLADVVRQLFANRSQDSVNKKLNEKVKFSLMLTHFIIPGLVYLHHERHVIHRDIKPSNLLVNHKGDVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPSDQFSPDIKKDPKERSSSLDLLNHPFIKKFEDKDIDVGILVGSLDPPVSFPR | 378 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 11475316 | 11478428 | + | CmoCh12G013100.1 | Cmo12g01310 | 393998 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo12g01310 | 378 | Gene3D | Phosphorylase Kinase; domain 1 | 62 | 168 | - | - | |
Cmo12g01310 | 378 | MobiDBLite | consensus disorder prediction | 322 | 342 | - | - | |
Cmo12g01310 | 378 | PANTHER | MITOGEN-ACTIVATED KINASE KINASE KINASE | 1 | 377 | - | - | |
Cmo12g01310 | 378 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 | 1 | 377 | - | - | |
Cmo12g01310 | 378 | Pfam | Protein kinase domain | 90 | 353 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo12g01310 | 378 | Gene3D | Transferase(Phosphotransferase) domain 1 | 170 | 367 | - | - | |
Cmo12g01310 | 378 | ProSiteProfiles | Protein kinase domain profile. | 89 | 353 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo12g01310 | 378 | SMART | serkin_6 | 89 | 353 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo12g01310 | 378 | ProSitePatterns | Protein kinases ATP-binding region signature. | 95 | 118 | IPR017441 | GO:0005524 | |
Cmo12g01310 | 378 | CDD | PKc_MAPKK_plant_like | 87 | 357 | - | - | |
Cmo12g01310 | 378 | SUPERFAMILY | Protein kinase-like (PK-like) | 81 | 357 | IPR011009 | - | |
Cmo12g01310 | 378 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 219 | 231 | IPR008271 | GO:0004672|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g01376 | Cmo-Chr5:10666100 | Cmo12g01310 | Cmo-Chr12:11475316 | 0 | dispersed | |
Cmo12g01310 | Cmo-Chr12:11475316 | Cmo12g01353 | Cmo-Chr12:11669407 | 9.59E-112 | dispersed | |
Cmo12g01310 | Cmo-Chr12:11475316 | Cmo10g00767 | Cmo-Chr10:3558589 | 1.85E-135 | transposed | |
Cmo12g01310 | Cmo-Chr12:11475316 | Cmo11g00726 | Cmo-Chr11:3514026 | 2.24E-135 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74753 | PF00069 | Pkinase | 4.20E-53 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo12g01310 | K04368 | - | csv:101218848 | 599.742 |