Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo12g01314 | ATGAAGATAGTGGAATTGGAAGATGCTGGGACTGATCGGGAAGATCAAATCGGTAGCGGTCAGATTGTGAAGGTGGATGCTAAAAGAGCTTTGGTTGGGGCTGGGGCTCGAATCTTGTTCTACCCTACCCTTTTCTACAACGTTCTTCGTAATAAAATGGAAGCCGAATTTAGATGGTGGGATGAAGTCGATCAGTTTCTTCTGCTGGGTGCAGTGCCGTTCCCCAAACACGTGCCGAGATTGAAGAAGCTCGGTGTTGGCGGCGTGATCACTCTCAATGAACCTTATGAAACATTAGTTCCATCTTCCTTGTATTATCGCCATGGAATTGACCACTTACAAATCCCCACCAGAGATTACTGTTTTGCTCCTAAATTTTCTGATATTAAACGAGCTGTGGACTTCATTCACAGAAATGCATCGTCTGGTAAAACGACATACGTCCACTGTAAAGCAGGACGAGGAAGGAGCACGACCATTGTGCTTTGCTATTTGGTCAAATATAAGCACATGACCCCATCTGCCGCCCTGGAATATGTGCGCTCGAGAAGACCACGCGTGTTGCTCGCCCCATCACAATGGGAGGCTGTTCAAGAATACAGCAACCGTCGTCCAGCTACAAGTTCCAGCTCACCCTCGGGAGGAGATGCGGTGCTCATTACGAAAGACGATCTAGAAGGATATCATGGTACGTGCATCGACGGTGTGGGTAGACAACTTGCAGTTGTCCCTAGGATGGTAGTGGATCTCTCATTAAGCGTCTGCCCGTGTCGGAGGCTCGTGCTTGTTGATGACCAACTTACATCACAGCACACCACCCGCTCGCTCTTGTTTAGAAGCGTCATGGAAGTAAGAAACAGAATCAAACAAACGTTGTTCGTCAAAGCACATAGAACACACGAAACTACAATTAGGTTGTACATAACTGGTACGTCGAAATTTCCCTCCCCTTGA | 954 | 47.38 | MKIVELEDAGTDREDQIGSGQIVKVDAKRALVGAGARILFYPTLFYNVLRNKMEAEFRWWDEVDQFLLLGAVPFPKHVPRLKKLGVGGVITLNEPYETLVPSSLYYRHGIDHLQIPTRDYCFAPKFSDIKRAVDFIHRNASSGKTTYVHCKAGRGRSTTIVLCYLVKYKHMTPSAALEYVRSRRPRVLLAPSQWEAVQEYSNRRPATSSSSPSGGDAVLITKDDLEGYHGTCIDGVGRQLAVVPRMVVDLSLSVCPCRRLVLVDDQLTSQHTTRSLLFRSVMEVRNRIKQTLFVKAHRTHETTIRLYITGTSKFPSP | 317 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 11499281 | 11501471 | + | CmoCh12G013140.1 | Cmo12g01314 | 394002 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo12g01314 | 317 | CDD | PTPMT1 | 59 | 203 | IPR044596 | GO:0004721 | |
Cmo12g01314 | 317 | Pfam | Dual specificity phosphatase, catalytic domain | 82 | 202 | IPR000340 | GO:0008138|GO:0016311 | |
Cmo12g01314 | 317 | PANTHER | - | 1 | 231 | - | - | |
Cmo12g01314 | 317 | PANTHER | OS01G0739200 PROTEIN | 1 | 231 | - | - | |
Cmo12g01314 | 317 | Gene3D | Protein tyrosine phosphatase superfamily | 59 | 206 | IPR029021 | - | |
Cmo12g01314 | 317 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 52 | 201 | IPR029021 | - | |
Cmo12g01314 | 317 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 59 | 206 | IPR020422 | GO:0006470|GO:0008138 | |
Cmo12g01314 | 317 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 148 | 158 | IPR016130 | GO:0016311|GO:0016791 | |
Cmo12g01314 | 317 | SMART | dsp_5 | 62 | 203 | IPR020422 | GO:0006470|GO:0008138 | |
Cmo12g01314 | 317 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 127 | 195 | IPR000387 | GO:0016311|GO:0016791 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo05g01381 | Cmo12g01314 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00821 | Cmo-Chr6:4459681 | Cmo12g01314 | Cmo-Chr12:11499281 | 1.24E-95 | dispersed | |
Cmo12g01314 | Cmo-Chr12:11499281 | Cmo16g01171 | Cmo-Chr16:8345053 | 9.21E-99 | dispersed | |
Cmo12g01314 | Cmo-Chr12:11499281 | Cmo05g01381 | Cmo-Chr5:10685795 | 6.02E-169 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo12g01314 | - | - | bhj:120080407 | 471.855 |