Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01314 ATGAAGATAGTGGAATTGGAAGATGCTGGGACTGATCGGGAAGATCAAATCGGTAGCGGTCAGATTGTGAAGGTGGATGCTAAAAGAGCTTTGGTTGGGGCTGGGGCTCGAATCTTGTTCTACCCTACCCTTTTCTACAACGTTCTTCGTAATAAAATGGAAGCCGAATTTAGATGGTGGGATGAAGTCGATCAGTTTCTTCTGCTGGGTGCAGTGCCGTTCCCCAAACACGTGCCGAGATTGAAGAAGCTCGGTGTTGGCGGCGTGATCACTCTCAATGAACCTTATGAAACATTAGTTCCATCTTCCTTGTATTATCGCCATGGAATTGACCACTTACAAATCCCCACCAGAGATTACTGTTTTGCTCCTAAATTTTCTGATATTAAACGAGCTGTGGACTTCATTCACAGAAATGCATCGTCTGGTAAAACGACATACGTCCACTGTAAAGCAGGACGAGGAAGGAGCACGACCATTGTGCTTTGCTATTTGGTCAAATATAAGCACATGACCCCATCTGCCGCCCTGGAATATGTGCGCTCGAGAAGACCACGCGTGTTGCTCGCCCCATCACAATGGGAGGCTGTTCAAGAATACAGCAACCGTCGTCCAGCTACAAGTTCCAGCTCACCCTCGGGAGGAGATGCGGTGCTCATTACGAAAGACGATCTAGAAGGATATCATGGTACGTGCATCGACGGTGTGGGTAGACAACTTGCAGTTGTCCCTAGGATGGTAGTGGATCTCTCATTAAGCGTCTGCCCGTGTCGGAGGCTCGTGCTTGTTGATGACCAACTTACATCACAGCACACCACCCGCTCGCTCTTGTTTAGAAGCGTCATGGAAGTAAGAAACAGAATCAAACAAACGTTGTTCGTCAAAGCACATAGAACACACGAAACTACAATTAGGTTGTACATAACTGGTACGTCGAAATTTCCCTCCCCTTGA 954 47.38 MKIVELEDAGTDREDQIGSGQIVKVDAKRALVGAGARILFYPTLFYNVLRNKMEAEFRWWDEVDQFLLLGAVPFPKHVPRLKKLGVGGVITLNEPYETLVPSSLYYRHGIDHLQIPTRDYCFAPKFSDIKRAVDFIHRNASSGKTTYVHCKAGRGRSTTIVLCYLVKYKHMTPSAALEYVRSRRPRVLLAPSQWEAVQEYSNRRPATSSSSPSGGDAVLITKDDLEGYHGTCIDGVGRQLAVVPRMVVDLSLSVCPCRRLVLVDDQLTSQHTTRSLLFRSVMEVRNRIKQTLFVKAHRTHETTIRLYITGTSKFPSP 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11499281 11501471 + CmoCh12G013140.1 Cmo12g01314 394002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01314 317 CDD PTPMT1 59 203 IPR044596 GO:0004721
Cmo12g01314 317 Pfam Dual specificity phosphatase, catalytic domain 82 202 IPR000340 GO:0008138|GO:0016311
Cmo12g01314 317 PANTHER - 1 231 - -
Cmo12g01314 317 PANTHER OS01G0739200 PROTEIN 1 231 - -
Cmo12g01314 317 Gene3D Protein tyrosine phosphatase superfamily 59 206 IPR029021 -
Cmo12g01314 317 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 52 201 IPR029021 -
Cmo12g01314 317 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470|GO:0008138
Cmo12g01314 317 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Cmo12g01314 317 SMART dsp_5 62 203 IPR020422 GO:0006470|GO:0008138
Cmo12g01314 317 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311|GO:0016791
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g01381 Cmo12g01314 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00821 Cmo-Chr6:4459681 Cmo12g01314 Cmo-Chr12:11499281 1.24E-95 dispersed
Cmo12g01314 Cmo-Chr12:11499281 Cmo16g01171 Cmo-Chr16:8345053 9.21E-99 dispersed
Cmo12g01314 Cmo-Chr12:11499281 Cmo05g01381 Cmo-Chr5:10685795 6.02E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01314 - - bhj:120080407 471.855