Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01319 ATGATGATCGATGAGCAACCTAACCGCCCTAACCAGAAGCTTCATGTTCCGCCATGGACGTTTATGGAAGATCCGGCGTCGGATGGGTACAGTCATTCGCCGGGAAGCGGCGGCAGCGGAAGTGGAAGCGGAAGCGGAGTCAAGTGCGACGGATGTTCCACTGGAGATGGATACTCTCCTTTTTATCTTCAGGAAGCATTGGCGATGCTGCAGCAGTACTTGCCGTCGAAAGAGGCAGAGGTGGAATCGGATCTTGATGCTTCAGGTCGGGAGGCGGATTCTCCGGTGGATACGTATTCCTCCGATCAGTTTCGAATGTACGAGTTCAAGATTAAGAAGTGTTTGCGAGGAAGATCGCACGACTGGACCGAGTGCCCGTTCGCTCATCCCGGCGAGAAGGCTCGCCGGCGAGATCCGAGGAAGTATTACTATTCTGGTACGGCGTGTGCCGATTTTAGGAAGGGGAACTGTACTAAAGGAGATGCGTGTGAGTTCGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGATATAGGACTCAGCCGTGCAAGGATGGAACGAGTTGCCGAAGGAGAGTTTGCTTCTTTGCTCATACGCCAGAGCAACTTAGGATTTTGCCTCAACAGAGTCCTCGGAGTACGAGTTCCATCCCTTCATACGACGGATCTCCTCTTCGGCAAGCTATTGAGGCCTGTGCGAAACAAATGCCCTATTTATCTTCTTCAGGAACATCGACGCCGGTATCTCCTCGAATCGAGTCTCCGCCTCAATCGCCAATGTTTAGATCACTTAATCGACCGCACGCGACTAGTTCGATCAACGAAATGGTAGCGTCGCTACGAAGTTTACAACTCCACAAGGAACTCGGTAAAGTGCAATCTCCTTCTTCGTTGTGGAATGTTCAAGTCGGATCTCCTGTGTTCGGATCTCCAGGGGAATCCAGCGCTCGTTCTGGCTTCAGTAGCCTTCCAGATACTCCAACTCCTCCTGCCGTCCGATATCTCGATTTCTGGGACCTAGGTTGCGGCGAGGAACAGGCGATGGCGCGAGTGGAATCCGGGAGAGACTTACGAGCAAAAATGCTGGAGAAATTACGAAAGGAGAACTCCGTCGCGTGCGGCGATCAGGAGAAACCCGGCGGCGGAAGTGTGGACGTTGGTTGGATCTCGGAGCTTCTCAAGTAA 1188 52.78 MMIDEQPNRPNQKLHVPPWTFMEDPASDGYSHSPGSGGSGSGSGSGVKCDGCSTGDGYSPFYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLRGRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCTKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSSLWNVQVGSPVFGSPGESSARSGFSSLPDTPTPPAVRYLDFWDLGCGEEQAMARVESGRDLRAKMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11538984 11540171 + CmoCh12G013190.1 Cmo12g01319 394007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01319 395 MobiDBLite consensus disorder prediction 32 48 - -
Cmo12g01319 395 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 148 168 IPR000571 GO:0046872
Cmo12g01319 395 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 10 394 - -
Cmo12g01319 395 SMART c3hfinal6 143 169 IPR000571 GO:0046872
Cmo12g01319 395 SMART c3hfinal6 178 201 IPR000571 GO:0046872
Cmo12g01319 395 MobiDBLite consensus disorder prediction 1 48 - -
Cmo12g01319 395 ProSiteProfiles Zinc finger C3H1-type profile. 143 170 IPR000571 GO:0046872
Cmo12g01319 395 PANTHER UNKEMPT FAMILY MEMBER 10 394 IPR045234 -
Cmo12g01319 395 MobiDBLite consensus disorder prediction 241 260 - -
Cmo12g01319 395 Gene3D - 143 206 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00717 Cmo12g01319 CCT
Cmo10g00717 Cmo12g01319 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00683 Cmo-Chr11:3277711 Cmo12g01319 Cmo-Chr12:11538984 8.22E-153 dispersed
Cmo12g00560 Cmo-Chr12:3468989 Cmo12g01319 Cmo-Chr12:11538984 1.43E-74 dispersed
Cmo12g01319 Cmo-Chr12:11538984 Cmo19g01036 Cmo-Chr19:9049904 1.70E-65 dispersed
Cmo10g00717 Cmo-Chr10:3287572 Cmo12g01319 Cmo-Chr12:11538984 1.10E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10789 PF00642 zf-CCCH 5.00E-05 CL0537 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01319 - - cmax:111465573 775.393