Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01349 ATGATACGTGTACGAAAAGTTGGAGATATTGGTATTGCCATCTATCCATTGCACGAGTGGCTTTCTTGCTCTTTGTTCTGCTGCTTTTCGCTCTCCATTTCTTCTTATTTCCACTTCCGCACCCATTTCTTGCTGTTTGATTCTTCTTTTCTCGAATTCAAGCTTTATACGGGGCTCTGGATTCAAGCAAACATGGATGGAGGAGCGGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGACTTTAAGGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACCGATGTCGAAGAATTTTATCAGCAGTGCGACCCTGAGAAGGAAAACCTCTGCCTATATGGGTTCCCTAATGAACAGTGGGAAGTTAATTTGCCTGCTGAAGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGTATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTGTCCCTTGTTGCTGTTCATAGTGACGCATGGCTTCTTGCTGTGGCTTTCTACTTTGGTGCTAGATTTGGCTTTGATAAATCTGACAGGAAACGACTTTTTACAATGATAAATGATATGCCCACAATCTTTGAGGTCGTGACGGGAGGTGTGAAGAAACAGGGAAAAGACAAGTCGTTAGTTTCAAATAACATCAGCAACAAATCCAAGACAGGCTCAAAAGGGCGAGGATCTGAGGCAAGCAAATTGTCAAAGGGGTTAGCAAAAGAAGAGGATGAGGGACTACTAGACGAGGAAGAGGAGGAGGAGCACGGGGAGACCTTATGCGGGGCGTGCGGGGAAAACTATGCATCGGACGAGTTCTGGATATGTTGTGACCTATGTGAGAAGTGGTTCCATGGGAAGTGTGTGAAGATCACTCCTGCAAGAGCCGAACATATCAAGCAATACAAATGCCCCTCGTGCAGCAATAAGCGAGCACGGCCCTGA 951 46.58 MIRVRKVGDIGIAIYPLHEWLSCSLFCCFSLSISSYFHFRTHFLLFDSSFLEFKLYTGLWIQANMDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTDVEEFYQQCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKRLFTMINDMPTIFEVVTGGVKKQGKDKSLVSNNISNKSKTGSKGRGSEASKLSKGLAKEEDEGLLDEEEEEEHGETLCGACGENYASDEFWICCDLCEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11655177 11658627 + CmoCh12G013490.1 Cmo12g01349 394037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01349 316 ProSitePatterns Zinc finger PHD-type signature. 263 309 IPR019786 -
Cmo12g01349 316 MobiDBLite consensus disorder prediction 211 232 - -
Cmo12g01349 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 311 IPR013083 -
Cmo12g01349 316 Pfam PHD-finger 263 312 IPR019787 -
Cmo12g01349 316 ProSiteProfiles Zinc finger PHD-type profile. 260 312 IPR019787 -
Cmo12g01349 316 Pfam Alfin 75 203 IPR021998 GO:0006355|GO:0042393
Cmo12g01349 316 SMART PHD_3 262 310 IPR001965 -
Cmo12g01349 316 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 67 316 - -
Cmo12g01349 316 PANTHER CPG BINDING PROTEIN 67 316 IPR045104 GO:0006355|GO:0042393
Cmo12g01349 316 MobiDBLite consensus disorder prediction 211 256 - -
Cmo12g01349 316 SUPERFAMILY FYVE/PHD zinc finger 252 313 IPR011011 -
Cmo12g01349 316 CDD PHD_AL_plant 262 312 IPR044104 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00430 Cmo-Chr5:2007974 Cmo12g01349 Cmo-Chr12:11655177 3.37E-139 dispersed
Cmo08g00755 Cmo-Chr8:4772591 Cmo12g01349 Cmo-Chr12:11655177 1.52E-119 dispersed
Cmo12g00597 Cmo-Chr12:3678268 Cmo12g01349 Cmo-Chr12:11655177 2.68E-110 dispersed
Cmo12g01349 Cmo-Chr12:11655177 Cmo17g00678 Cmo-Chr17:6938430 3.11E-127 dispersed
Cmo12g01349 Cmo-Chr12:11655177 Cmo05g01413 Cmo-Chr5:10858557 2.64E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10792 PF12165 Alfin 4.90E-70 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01349 - - jre:109009410 462.611