Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01349 ATGATACGTGTACGAAAAGTTGGAGATATTGGTATTGCCATCTATCCATTGCACGAGTGGCTTTCTTGCTCTTTGTTCTGCTGCTTTTCGCTCTCCATTTCTTCTTATTTCCACTTCCGCACCCATTTCTTGCTGTTTGATTCTTCTTTTCTCGAATTCAAGCTTTATACGGGGCTCTGGATTCAAGCAAACATGGATGGAGGAGCGGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGACTTTAAGGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACCGATGTCGAAGAATTTTATCAGCAGTGCGACCCTGAGAAGGAAAACCTCTGCCTATATGGGTTCCCTAATGAACAGTGGGAAGTTAATTTGCCTGCTGAAGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGTATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTGTCCCTTGTTGCTGTTCATAGTGACGCATGGCTTCTTGCTGTGGCTTTCTACTTTGGTGCTAGATTTGGCTTTGATAAATCTGACAGGAAACGACTTTTTACAATGATAAATGATATGCCCACAATCTTTGAGGTCGTGACGGGAGGTGTGAAGAAACAGGGAAAAGACAAGTCGTTAGTTTCAAATAACATCAGCAACAAATCCAAGACAGGCTCAAAAGGGCGAGGATCTGAGGCAAGCAAATTGTCAAAGGGGTTAGCAAAAGAAGAGGATGAGGGACTACTAGACGAGGAAGAGGAGGAGGAGCACGGGGAGACCTTATGCGGGGCGTGCGGGGAAAACTATGCATCGGACGAGTTCTGGATATGTTGTGACCTATGTGAGAAGTGGTTCCATGGGAAGTGTGTGAAGATCACTCCTGCAAGAGCCGAACATATCAAGCAATACAAATGCCCCTCGTGCAGCAATAAGCGAGCACGGCCCTGA 951 46.58 MIRVRKVGDIGIAIYPLHEWLSCSLFCCFSLSISSYFHFRTHFLLFDSSFLEFKLYTGLWIQANMDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTDVEEFYQQCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKRLFTMINDMPTIFEVVTGGVKKQGKDKSLVSNNISNKSKTGSKGRGSEASKLSKGLAKEEDEGLLDEEEEEEHGETLCGACGENYASDEFWICCDLCEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11655177 11658627 + CmoCh12G013490.1 Cmo12g01349 394037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01349 316 ProSitePatterns Zinc finger PHD-type signature. 263 309 IPR019786 -
Cmo12g01349 316 MobiDBLite consensus disorder prediction 211 232 - -
Cmo12g01349 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 311 IPR013083 -
Cmo12g01349 316 Pfam PHD-finger 263 312 IPR019787 -
Cmo12g01349 316 ProSiteProfiles Zinc finger PHD-type profile. 260 312 IPR019787 -
Cmo12g01349 316 Pfam Alfin 75 203 IPR021998 GO:0006355|GO:0042393
Cmo12g01349 316 SMART PHD_3 262 310 IPR001965 -
Cmo12g01349 316 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 67 316 - -
Cmo12g01349 316 PANTHER CPG BINDING PROTEIN 67 316 IPR045104 GO:0006355|GO:0042393
Cmo12g01349 316 MobiDBLite consensus disorder prediction 211 256 - -
Cmo12g01349 316 SUPERFAMILY FYVE/PHD zinc finger 252 313 IPR011011 -
Cmo12g01349 316 CDD PHD_AL_plant 262 312 IPR044104 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01349 - - - jre:109009410 462.611
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00430 Cmo-Chr5:2007974 Cmo12g01349 Cmo-Chr12:11655177 3.37E-139 dispersed
Cmo08g00755 Cmo-Chr8:4772591 Cmo12g01349 Cmo-Chr12:11655177 1.52E-119 dispersed
Cmo12g00597 Cmo-Chr12:3678268 Cmo12g01349 Cmo-Chr12:11655177 2.68E-110 dispersed
Cmo12g01349 Cmo-Chr12:11655177 Cmo17g00678 Cmo-Chr17:6938430 3.11E-127 dispersed
Cmo12g01349 Cmo-Chr12:11655177 Cmo05g01413 Cmo-Chr5:10858557 2.64E-153 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo04g00939 . 1 293 Alfin-like Transcription Factor Family AT1G14510 71.7 6.3e-107 384.4
Cmo12g01349 . 73 313 Alfin-like Transcription Factor Family AT1G14510 69.0 2.1e-94 342.8
Cmo08g00755 CST 10 245 Alfin-like Transcription Factor Family AT1G14510 68.8 5.2e-93 338.2
Cmo05g00430 CST 9 250 Alfin-like Transcription Factor Family AT1G14510 69.0 6.8e-93 337.8
Cmo05g01413 . 9 248 Alfin-like Transcription Factor Family AT1G14510 69.3 1.5e-92 336.7
Cmo17g00678 CST 10 248 Alfin-like Transcription Factor Family AT1G14510 66.8 2.7e-89 325.9
Cmo12g00597 CST 411 641 Alfin-like Transcription Factor Family AT1G14510 66.7 5.8e-84 308.1
Cmo14g00058 CST 8 237 Alfin-like Transcription Factor Family AT1G14510 60.8 1.6e-78 290.0
Cmo04g00150 CST,ECH 8 238 Alfin-like Transcription Factor Family AT1G14510 59.8 5.2e-77 285.0
Cmo04g01181 CST,ECH 9 238 Alfin-like Transcription Factor Family AT1G14510 59.2 1.2e-76 283.9
Cmo06g00221 CST 8 236 Alfin-like Transcription Factor Family AT1G14510 57.8 1.7e-72 270.0
Cmo16g00814 . 1 169 Alfin-like Transcription Factor Family AT1G14510 79.9 8.7e-64 241.1
Cmo12g01349 . 65 315 Alfin-like Transcription Factor Family AT5G26210 75.2 6.2e-110 394.4
Cmo05g00430 CST 1 252 Alfin-like Transcription Factor Family AT5G26210 78.3 2.6e-108 389.0
Cmo05g01413 . 1 250 Alfin-like Transcription Factor Family AT5G26210 73.6 2.2e-107 386.0
Cmo08g00755 CST 1 250 Alfin-like Transcription Factor Family AT5G26210 65.4 2.7e-97 352.4
Cmo17g00678 CST 1 250 Alfin-like Transcription Factor Family AT5G26210 64.2 1.5e-95 346.7
Cmo12g00597 CST 424 643 Alfin-like Transcription Factor Family AT5G26210 72.5 9.9e-92 334.0
Cmo04g00939 . 9 295 Alfin-like Transcription Factor Family AT5G26210 63.2 4.3e-87 318.5
Cmo14g00058 CST 8 239 Alfin-like Transcription Factor Family AT5G26210 58.9 3.0e-80 295.8
Cmo04g00150 CST,ECH 5 240 Alfin-like Transcription Factor Family AT5G26210 57.4 5.1e-80 295.0
Cmo04g01181 CST,ECH 9 240 Alfin-like Transcription Factor Family AT5G26210 58.4 7.4e-79 291.2
Cmo06g00221 CST 8 238 Alfin-like Transcription Factor Family AT5G26210 54.9 2.5e-71 266.2
Cmo16g00814 . 1 171 Alfin-like Transcription Factor Family AT5G26210 68.0 3.5e-52 202.6
Cmo12g01349 . 65 315 Alfin-like Transcription Factor Family AT3G42790 72.2 2.1e-102 369.4
Cmo05g01413 . 1 250 Alfin-like Transcription Factor Family AT3G42790 69.3 2.8e-99 359.0
Cmo05g00430 CST 1 252 Alfin-like Transcription Factor Family AT3G42790 72.8 2.8e-99 359.0
Cmo08g00755 CST 1 250 Alfin-like Transcription Factor Family AT3G42790 64.1 1.5e-95 346.7
Cmo17g00678 CST 1 250 Alfin-like Transcription Factor Family AT3G42790 62.2 3.0e-93 339.0
Cmo12g00597 CST 411 643 Alfin-like Transcription Factor Family AT3G42790 67.1 1.0e-85 313.9
Cmo04g00939 . 9 295 Alfin-like Transcription Factor Family AT3G42790 60.6 3.7e-83 305.4
Cmo04g00150 CST,ECH 6 240 Alfin-like Transcription Factor Family AT3G42790 59.2 1.7e-80 296.6
Cmo04g01181 CST,ECH 9 240 Alfin-like Transcription Factor Family AT3G42790 59.9 1.5e-79 293.5
Cmo14g00058 CST 8 239 Alfin-like Transcription Factor Family AT3G42790 58.8 4.2e-79 292.0
Cmo06g00221 CST 8 238 Alfin-like Transcription Factor Family AT3G42790 55.8 1.3e-72 270.4
Cmo16g00814 . 1 171 Alfin-like Transcription Factor Family AT3G42790 63.7 1.1e-47 187.6
Cmo04g01181 CST,ECH 1 241 Alfin-like Transcription Factor Family AT5G05610 77.3 3.1e-111 398.7
Cmo04g00150 CST,ECH 1 240 Alfin-like Transcription Factor Family AT5G05610 76.8 7.6e-110 394.0
Cmo14g00058 CST 1 240 Alfin-like Transcription Factor Family AT5G05610 76.3 1.1e-108 390.2
Cmo06g00221 CST 1 239 Alfin-like Transcription Factor Family AT5G05610 71.0 3.9e-98 355.1
Cmo08g00755 CST 10 250 Alfin-like Transcription Factor Family AT5G05610 65.7 2.1e-91 332.8
Cmo05g01413 . 8 250 Alfin-like Transcription Factor Family AT5G05610 65.6 2.3e-90 329.3
Cmo12g01349 . 72 315 Alfin-like Transcription Factor Family AT5G05610 65.6 2.3e-90 329.3
Cmo05g00430 CST 8 252 Alfin-like Transcription Factor Family AT5G05610 64.1 8.2e-88 320.9
Cmo17g00678 CST 10 250 Alfin-like Transcription Factor Family AT5G05610 63.6 2.4e-87 319.3
Cmo12g00597 CST 424 643 Alfin-like Transcription Factor Family AT5G05610 66.4 7.5e-81 297.7
Cmo04g00939 . 9 295 Alfin-like Transcription Factor Family AT5G05610 53.0 1.3e-77 287.0
Cmo16g00814 . 1 171 Alfin-like Transcription Factor Family AT5G05610 57.0 7.8e-46 181.4
Cmo04g01181 CST,ECH 43 241 Alfin-like Transcription Factor Family AT3G11200 79.7 3.9e-95 345.1
Cmo04g00150 CST,ECH 43 240 Alfin-like Transcription Factor Family AT3G11200 78.6 1.1e-92 337.0
Cmo14g00058 CST 43 240 Alfin-like Transcription Factor Family AT3G11200 77.7 9.4e-89 323.9
Cmo06g00221 CST 44 239 Alfin-like Transcription Factor Family AT3G11200 72.6 5.2e-79 291.6
Cmo12g00597 CST 435 643 Alfin-like Transcription Factor Family AT3G11200 64.9 4.5e-75 278.5
Cmo08g00755 CST 44 250 Alfin-like Transcription Factor Family AT3G11200 65.4 6.5e-74 274.6
Cmo05g01413 . 44 250 Alfin-like Transcription Factor Family AT3G11200 63.8 8.5e-74 274.2
Cmo12g01349 . 108 315 Alfin-like Transcription Factor Family AT3G11200 62.9 2.5e-73 272.7
Cmo17g00678 CST 44 250 Alfin-like Transcription Factor Family AT3G11200 63.8 4.7e-72 268.5
Cmo05g00430 CST 44 252 Alfin-like Transcription Factor Family AT3G11200 62.1 2.3e-71 266.2
Cmo04g00939 . 85 295 Alfin-like Transcription Factor Family AT3G11200 63.0 2.2e-69 259.6
Cmo16g00814 . 1 171 Alfin-like Transcription Factor Family AT3G11200 58.1 4.9e-45 178.7
Cmo04g00939 . 1 205 Alfin-like Transcription Factor Family AT2G02470 67.3 6.7e-72 268.1
Cmo05g01413 . 1 158 Alfin-like Transcription Factor Family AT2G02470 75.9 3.6e-65 245.7
Cmo12g01349 . 65 222 Alfin-like Transcription Factor Family AT2G02470 75.3 1.0e-64 244.2
Cmo05g00430 CST 1 155 Alfin-like Transcription Factor Family AT2G02470 78.7 2.3e-64 243.0
Cmo08g00755 CST 10 158 Alfin-like Transcription Factor Family AT2G02470 76.5 3.7e-62 235.7
Cmo17g00678 CST 10 160 Alfin-like Transcription Factor Family AT2G02470 76.2 3.7e-62 235.7
Cmo14g00058 CST 8 167 Alfin-like Transcription Factor Family AT2G02470 64.2 1.1e-53 207.6
Cmo04g01181 CST,ECH 9 155 Alfin-like Transcription Factor Family AT2G02470 68.0 9.1e-53 204.5
Cmo04g00150 CST,ECH 8 155 Alfin-like Transcription Factor Family AT2G02470 68.2 9.1e-53 204.5
Cmo06g00221 CST 8 175 Alfin-like Transcription Factor Family AT2G02470 61.8 1.2e-52 204.1
Cmo12g00597 CST 424 549 Alfin-like Transcription Factor Family AT2G02470 79.4 1.6e-52 203.8
Cmo12g01349 . 65 228 Alfin-like Transcription Factor Family AT5G20510 77.0 1.1e-71 266.9
Cmo05g00430 CST 1 157 Alfin-like Transcription Factor Family AT5G20510 78.5 7.2e-71 264.2
Cmo08g00755 CST 1 162 Alfin-like Transcription Factor Family AT5G20510 76.4 4.0e-69 258.5
Cmo17g00678 CST 1 162 Alfin-like Transcription Factor Family AT5G20510 75.2 3.4e-68 255.4
Cmo05g01413 . 1 164 Alfin-like Transcription Factor Family AT5G20510 72.1 4.8e-67 251.5
Cmo04g00939 . 3 213 Alfin-like Transcription Factor Family AT5G20510 55.9 2.4e-58 222.6
Cmo12g00597 CST 411 558 Alfin-like Transcription Factor Family AT5G20510 71.6 5.4e-58 221.5
Cmo04g00150 CST,ECH 6 157 Alfin-like Transcription Factor Family AT5G20510 63.3 4.0e-53 205.3
Cmo14g00058 CST 4 157 Alfin-like Transcription Factor Family AT5G20510 61.9 7.5e-52 201.1
Cmo04g01181 CST,ECH 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 4.9e-51 198.4
Cmo06g00221 CST 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 1.8e-50 196.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10792 PF12165 Alfin 4.90E-70 No_clan Cmo TF