Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01353 ATGAAGAAGGACAGCTCCATGAATCCTAACTTGAAGCTCCATCTGCCTCCTCCCGAGGAAGTTTCCTTCGCCTTCATAACCCGAGGCGGTACTTTCATAGATGGCGATTTGCTTGTGAACAGAGACGGCGTGCGGATCGTTTCTCAAGCGGAAGACGAAAGTCCTCCACCAATAAAGCCCTCAGACAACCATTTGTCTTTAGCAGATTTAGATTCAATAAAAGTCATTGGGAAAGGAAACGGTGGAGTAGTTCAATTAGTCCGACATAAATGGACGAATCAGTTTTTTGCTCTAAAGGTGATTCAGATGAATGCTGAGGAATCTCGTTGTAGGCTGGTTGCTCAGGAACTAAAAATCAATCAATTGGCACAAAACCCTTACATCGTCGTCTGTTACCAGATCTTCTATGACAATGGTGCCATTTTCATAATCTTGGAATATATGGACGGTGGATCACTCGCAGATCTTCTAAAAAAAGTTGGAACAATCCTAGAGCCGTATCTTGCAGCCATTTGTTACCAGGTCCTCAAGGGGTTAATATACCTTCACCATGAAGAACATGTCATCCACAGAGACCTTAAGCCTTCTAATTTGTTGATAAATCATAGAGGGGAAGTTAAGATTACTGACTTTGGTGTTAGTGCTATACTGGCGAGTACGTCTGATCTGGCACATTCTTTCGTTGGCACTTACACTTTCATGTCTCCGGAGAGAATCAGTGGGGGCAAATATGACAACAAAAGTGACATATGGAGTTTGGGATTGGTTTTGCTTGAATGTGCAACGGGTCAATTTCCATATACTCCACCAGATAAGGATAAAGGGTGGGAAGGCTTTTTTGATGTAATGCTAGCTGTAGTCGAACTAGCATCACCATCTGCACCTGAACAATTTTCCCCTGAGTTCTGCTCTTTCATTTCTTCATGGTATACAAGCTTTCGTCTTACACAAAGATCCGCAGCAGAGAAGCTCTGCACGCGAACTTCTGGTATAATTGATCCTTCTGCTGTGCATCCTTTCATCAAAAAGTTTGAACACTTGGACGTTGATCTTGCAGCTTACTTCAAAGATGCTGGCTCTCCATTGGCAACCTTCTAA 1098 42.99 MKKDSSMNPNLKLHLPPPEEVSFAFITRGGTFIDGDLLVNRDGVRIVSQAEDESPPPIKPSDNHLSLADLDSIKVIGKGNGGVVQLVRHKWTNQFFALKVIQMNAEESRCRLVAQELKINQLAQNPYIVVCYQIFYDNGAIFIILEYMDGGSLADLLKKVGTILEPYLAAICYQVLKGLIYLHHEEHVIHRDLKPSNLLINHRGEVKITDFGVSAILASTSDLAHSFVGTYTFMSPERISGGKYDNKSDIWSLGLVLLECATGQFPYTPPDKDKGWEGFFDVMLAVVELASPSAPEQFSPEFCSFISSWYTSFRLTQRSAAEKLCTRTSGIIDPSAVHPFIKKFEHLDVDLAAYFKDAGSPLATF 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11669407 11672328 + CmoCh12G013530.1 Cmo12g01353 394041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01353 365 PANTHER MAP KINASE KINASE 5 364 - -
Cmo12g01353 365 Coils Coil 105 125 - -
Cmo12g01353 365 ProSiteProfiles Protein kinase domain profile. 70 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01353 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Cmo12g01353 365 Gene3D Phosphorylase Kinase; domain 1 48 149 - -
Cmo12g01353 365 SUPERFAMILY Protein kinase-like (PK-like) 56 314 IPR011009 -
Cmo12g01353 365 SMART serkin_6 70 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01353 365 CDD PKc_MAPKK_plant_like 68 345 - -
Cmo12g01353 365 Gene3D Transferase(Phosphotransferase) domain 1 150 360 - -
Cmo12g01353 365 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 5 364 - -
Cmo12g01353 365 Pfam Protein kinase domain 72 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01353 365 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01310 Cmo-Chr12:11475316 Cmo12g01353 Cmo-Chr12:11669407 9.59E-112 dispersed
Cmo12g01353 Cmo-Chr12:11669407 Cmo14g00685 Cmo-Chr14:3500450 1.15E-65 dispersed
Cmo01g00026 Cmo-Chr1:97615 Cmo12g01353 Cmo-Chr12:11669407 2.69E-53 wgd
Cmo10g00767 Cmo-Chr10:3558589 Cmo12g01353 Cmo-Chr12:11669407 0 wgd
Cmo11g00726 Cmo-Chr11:3514026 Cmo12g01353 Cmo-Chr12:11669407 3.63E-177 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74755 PF00069 Pkinase 2.90E-61 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01353 K20603 - csv:101206374 612.838