Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01353 ATGAAGAAGGACAGCTCCATGAATCCTAACTTGAAGCTCCATCTGCCTCCTCCCGAGGAAGTTTCCTTCGCCTTCATAACCCGAGGCGGTACTTTCATAGATGGCGATTTGCTTGTGAACAGAGACGGCGTGCGGATCGTTTCTCAAGCGGAAGACGAAAGTCCTCCACCAATAAAGCCCTCAGACAACCATTTGTCTTTAGCAGATTTAGATTCAATAAAAGTCATTGGGAAAGGAAACGGTGGAGTAGTTCAATTAGTCCGACATAAATGGACGAATCAGTTTTTTGCTCTAAAGGTGATTCAGATGAATGCTGAGGAATCTCGTTGTAGGCTGGTTGCTCAGGAACTAAAAATCAATCAATTGGCACAAAACCCTTACATCGTCGTCTGTTACCAGATCTTCTATGACAATGGTGCCATTTTCATAATCTTGGAATATATGGACGGTGGATCACTCGCAGATCTTCTAAAAAAAGTTGGAACAATCCTAGAGCCGTATCTTGCAGCCATTTGTTACCAGGTCCTCAAGGGGTTAATATACCTTCACCATGAAGAACATGTCATCCACAGAGACCTTAAGCCTTCTAATTTGTTGATAAATCATAGAGGGGAAGTTAAGATTACTGACTTTGGTGTTAGTGCTATACTGGCGAGTACGTCTGATCTGGCACATTCTTTCGTTGGCACTTACACTTTCATGTCTCCGGAGAGAATCAGTGGGGGCAAATATGACAACAAAAGTGACATATGGAGTTTGGGATTGGTTTTGCTTGAATGTGCAACGGGTCAATTTCCATATACTCCACCAGATAAGGATAAAGGGTGGGAAGGCTTTTTTGATGTAATGCTAGCTGTAGTCGAACTAGCATCACCATCTGCACCTGAACAATTTTCCCCTGAGTTCTGCTCTTTCATTTCTTCATGGTATACAAGCTTTCGTCTTACACAAAGATCCGCAGCAGAGAAGCTCTGCACGCGAACTTCTGGTATAATTGATCCTTCTGCTGTGCATCCTTTCATCAAAAAGTTTGAACACTTGGACGTTGATCTTGCAGCTTACTTCAAAGATGCTGGCTCTCCATTGGCAACCTTCTAA 1098 42.99 MKKDSSMNPNLKLHLPPPEEVSFAFITRGGTFIDGDLLVNRDGVRIVSQAEDESPPPIKPSDNHLSLADLDSIKVIGKGNGGVVQLVRHKWTNQFFALKVIQMNAEESRCRLVAQELKINQLAQNPYIVVCYQIFYDNGAIFIILEYMDGGSLADLLKKVGTILEPYLAAICYQVLKGLIYLHHEEHVIHRDLKPSNLLINHRGEVKITDFGVSAILASTSDLAHSFVGTYTFMSPERISGGKYDNKSDIWSLGLVLLECATGQFPYTPPDKDKGWEGFFDVMLAVVELASPSAPEQFSPEFCSFISSWYTSFRLTQRSAAEKLCTRTSGIIDPSAVHPFIKKFEHLDVDLAAYFKDAGSPLATF 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11669407 11672328 + CmoCh12G013530.1 Cmo12g01353 394041

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01353 365 PANTHER MAP KINASE KINASE 5 364 - -
Cmo12g01353 365 Coils Coil 105 125 - -
Cmo12g01353 365 ProSiteProfiles Protein kinase domain profile. 70 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01353 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Cmo12g01353 365 Gene3D Phosphorylase Kinase; domain 1 48 149 - -
Cmo12g01353 365 SUPERFAMILY Protein kinase-like (PK-like) 56 314 IPR011009 -
Cmo12g01353 365 SMART serkin_6 70 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01353 365 CDD PKc_MAPKK_plant_like 68 345 - -
Cmo12g01353 365 Gene3D Transferase(Phosphotransferase) domain 1 150 360 - -
Cmo12g01353 365 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 5 364 - -
Cmo12g01353 365 Pfam Protein kinase domain 72 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01353 365 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01353 K20603 MKK2; mitogen-activated protein kinase kinase 2 [EC:2.7.12.2] - csv:101206374 612.838
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01310 Cmo-Chr12:11475316 Cmo12g01353 Cmo-Chr12:11669407 9.59E-112 dispersed
Cmo12g01353 Cmo-Chr12:11669407 Cmo14g00685 Cmo-Chr14:3500450 1.15E-65 dispersed
Cmo01g00026 Cmo-Chr1:97615 Cmo12g01353 Cmo-Chr12:11669407 2.69E-53 wgd
Cmo10g00767 Cmo-Chr10:3558589 Cmo12g01353 Cmo-Chr12:11669407 0 wgd
Cmo11g00726 Cmo-Chr11:3514026 Cmo12g01353 Cmo-Chr12:11669407 3.63E-177 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo10g00767 CST 28 357 MAP Kinase Kinase Gene Family AT4G26070 69.7 4.1e-133 471.9
Cmo11g00726 CST 28 353 MAP Kinase Kinase Gene Family AT4G26070 68.1 1.9e-130 463.0
Cmo12g01353 . 27 363 MAP Kinase Kinase Gene Family AT4G26070 63.6 1.7e-118 423.3
Cmo05g01376 . 26 349 MAP Kinase Kinase Gene Family AT4G26070 55.0 6.6e-107 384.8
Cmo10g00767 CST 1 330 MAP Kinase Kinase Gene Family AT4G29810 68.1 1.1e-130 463.8
Cmo11g00726 CST 1 326 MAP Kinase Kinase Gene Family AT4G29810 67.5 1.4e-130 463.4
Cmo05g01376 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 58.2 4.1e-109 392.1
Cmo12g01353 . 1 322 MAP Kinase Kinase Gene Family AT4G29810 61.0 2.6e-108 389.4
Cmo12g01310 . 10 348 MAP Kinase Kinase Gene Family AT4G29810 52.1 4.8e-94 342.0
Cmo14g00685 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 80.1 6.9e-230 793.9
Cmo01g00026 . 1 367 MAP Kinase Kinase Gene Family AT1G51660 69.1 3.5e-130 462.2
Cmo13g01011 . 48 317 MAP Kinase Kinase Gene Family AT1G51660 54.8 2.1e-82 303.5
Cmo01g00026 . 1 367 MAP Kinase Kinase Gene Family AT3G21220 69.6 1.1e-130 463.8
Cmo13g01011 . 48 313 MAP Kinase Kinase Gene Family AT3G21220 54.9 1.4e-83 307.4
Cmo05g01376 . 1 349 MAP Kinase Kinase Gene Family AT5G56580 83.7 1.4e-168 589.7
Cmo12g01310 . 1 378 MAP Kinase Kinase Gene Family AT5G56580 70.5 5.2e-147 518.1
Cmo10g00767 CST 7 356 MAP Kinase Kinase Gene Family AT5G56580 58.4 4.7e-116 415.2
Cmo11g00726 CST 7 352 MAP Kinase Kinase Gene Family AT5G56580 57.3 1.4e-115 413.7
Cmo12g01353 . 1 352 MAP Kinase Kinase Gene Family AT5G56580 52.8 9.0e-99 357.8
Cmo13g01011 . 1 311 MAP Kinase Kinase Gene Family AT1G18350 62.8 3.5e-107 385.6
Cmo01g00026 . 75 334 MAP Kinase Kinase Gene Family AT1G18350 52.5 1.6e-75 280.4
Cmo13g01011 . 1 299 MAP Kinase Kinase Gene Family AT3G06230 50.5 2.9e-79 292.7
Cmo13g01011 . 1 311 MAP Kinase Kinase Gene Family AT1G73500 66.3 1.9e-113 406.4
Cmo01g00026 . 75 334 MAP Kinase Kinase Gene Family AT1G73500 52.8 1.3e-77 287.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001594 2 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 9 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74755 PF00069 Pkinase 2.90E-61 CL0016 Cmo PK