Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01363 ATGGCCGCTGTTCGAAATGTGTTCCTCTTCCTCACCATCTTCCTCGTCGGCGGTCCGCCTCTTTCCTGTTCCCTCTCCGATAACGAGGCCCTCCTGAAGCTCAGGCAATCCTTCACCCATGCCGAATCCCTTAATTCCTGGAACCAGGACTCCCAACCCTGCGCCGCTCGATGGACTGGCATCATCTGCCACAGAGGCGTCATCACCGGTCTCCATCTCACCGGCCTCCGACTCTCCGGCCAGATCGACATCGAAGCTCTCCTAGAGCTTCGCAGCCTTCGAACCGTCAGCCTCGTGAACAACAGCTTCGCCGGGCCGATTCCCGAGTTCAACAGAATCGGCGTTCTCAAATCGCTCCTTCTCACAGGGAATGATTTCTCCGGGGCGATTCCTACCGATTTCTTCGCATCCCTCGCCTCTCTCAAGAAGGTTTGGCTGTCTTCCAACAATTTCTCCGGCGACATTCCGCACTCTCTGGCGAAACTCTCGTATCTAATCGAACTCCATCTCGAAAACAACCAATTCTCCGGCAAAATCCCTCACCTACACCAGGCCGCCTTAACCTCTCTAGATCTCTCCAATAACAAGCTGGAGGGAGAAATTCCGGAGAATCTAGCGAAGTTCGACGCGAACGCATTTGCCGGAAACGAAGGTCTGTGCGGGAAGCCGCTCCCGAAATCATGCGACAGCAATAACGCGCAGATTTCGGAGGAAAACGCGTCTCCTCCGGGGGAATCACAAGGCAGCGTCTCGAAATTAGTAGTGGCGTCGTTGATAGCGGTGGCTGTGTTTCTGGTGGTGGTTATGTTTCTGAGCGCTTCGAAGCGGAGAGAAGAGAAGTTCAGCAAGCTAGGGCGGGAGCAGATGAATGAGATGGTGGAGGTGCACGTGCCGAGTTCCGGGCATAGGGAGCAGCTGAGTAGAAAAGGTGGGGATTCCAGGAGAGGGTCGCAACAGGGGAAGGGAGGGATGAGTGATCTTGTGGTAGTGAACGAAGAAAAGGGTACATTTGGGATGGCGGATTTGATGAAGGCGGCGGCGGAGGTGCTGGGGAATGGTGGGTTGGGGTCGGCTTACAAGGCCGTCATGGCAAATGGGCTGTCGGTGGTGGTCAAAAGAATCAGAGAAATGAACAAATTAGGGAAGGATGGGTTCGATGCAGAGATGAGGCGCATGGGACGGCTGCAGCATCACAATATTCTCACGCCTTTGGCTTACCATTACAGGCGGGAGGAGAAGCTGCTGGTGTCCGAGTACATTCCAAAAGGCAGCCTCTTGTATGTGTTGCATGGCGACCGAGGAGCCTGCCATGCGGAGCTTAACTGGGCCACCCGGTTAAAGATCGTGAAGGGGATCGCCAGAGGCCTAGGGTTTCTCCATTCCGAGTTCGCGACCTATGATCTTCCGCATGGGAATCTGAAATCAAGCAACATTCTTCTAAGCGACACCTACGAGCCACTTCTCAGCGACTACGCGTTTCATCCGCTAATCAATCCAAACAACGCGACGGAGGCAATGTTTGCGTACAAATCCCCGGAGTACGCGCAACGGCAGGAAGTTTCCCCAAAATCTGATGTTTATTGCCTTGGAATTATCATCCTAGAAATTCTGACCGGCAAATTTCCTTCTCAATATCTTAGCAATGGCAAGGGAGGGACCGATGTGGTGCAGTGGGTCTCCTCCGCAGTAGCCGAGAAGAGGGAGGCGGAACTCATAGACCCTGAGATAGCAAACGACGCGAATGCAGTGAGTCGGATGGTCGAGCTCCTTAGAATCGGCGCCGATTGCACCCAATCCAATCCTCAGCAACGGCCAGAAATGAAGGAAGCCATTAGGAGAATAGAAGAAATATGA 1854 53.72 MAAVRNVFLFLTIFLVGGPPLSCSLSDNEALLKLRQSFTHAESLNSWNQDSQPCAARWTGIICHRGVITGLHLTGLRLSGQIDIEALLELRSLRTVSLVNNSFAGPIPEFNRIGVLKSLLLTGNDFSGAIPTDFFASLASLKKVWLSSNNFSGDIPHSLAKLSYLIELHLENNQFSGKIPHLHQAALTSLDLSNNKLEGEIPENLAKFDANAFAGNEGLCGKPLPKSCDSNNAQISEENASPPGESQGSVSKLVVASLIAVAVFLVVVMFLSASKRREEKFSKLGREQMNEMVEVHVPSSGHREQLSRKGGDSRRGSQQGKGGMSDLVVVNEEKGTFGMADLMKAAAEVLGNGGLGSAYKAVMANGLSVVVKRIREMNKLGKDGFDAEMRRMGRLQHHNILTPLAYHYRREEKLLVSEYIPKGSLLYVLHGDRGACHAELNWATRLKIVKGIARGLGFLHSEFATYDLPHGNLKSSNILLSDTYEPLLSDYAFHPLINPNNATEAMFAYKSPEYAQRQEVSPKSDVYCLGIIILEILTGKFPSQYLSNGKGGTDVVQWVSSAVAEKREAELIDPEIANDANAVSRMVELLRIGADCTQSNPQQRPEMKEAIRRIEEI 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11703610 11706370 - CmoCh12G013630.1 Cmo12g01363 394051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01363 617 SUPERFAMILY L domain-like 22 207 - -
Cmo12g01363 617 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Cmo12g01363 617 Gene3D Phosphorylase Kinase; domain 1 313 419 - -
Cmo12g01363 617 MobiDBLite consensus disorder prediction 294 325 - -
Cmo12g01363 617 Gene3D Ribonuclease Inhibitor 129 232 IPR032675 -
Cmo12g01363 617 Gene3D Ribonuclease Inhibitor 19 128 IPR032675 -
Cmo12g01363 617 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 4 617 - -
Cmo12g01363 617 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 4 617 - -
Cmo12g01363 617 Pfam Leucine Rich Repeat 187 207 IPR001611 GO:0005515
Cmo12g01363 617 Pfam Leucine rich repeat 116 175 IPR001611 GO:0005515
Cmo12g01363 617 Pfam Protein kinase domain 348 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01363 617 CDD STKc_IRAK 350 617 - -
Cmo12g01363 617 MobiDBLite consensus disorder prediction 297 315 - -
Cmo12g01363 617 ProSiteProfiles Protein kinase domain profile. 344 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g01363 617 SUPERFAMILY Protein kinase-like (PK-like) 348 613 IPR011009 -
Cmo12g01363 617 Gene3D Transferase(Phosphotransferase) domain 1 420 617 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01363 Cmo-Chr12:11703610 Cmo14g01203 Cmo-Chr14:10250707 8.72E-147 dispersed
Cmo01g00001 Cmo-Chr1:3106 Cmo12g01363 Cmo-Chr12:11703610 3.25E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74756 PF00069 Pkinase 6.70E-29 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01363 - - cmo:103498999 994.186