Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01366 ATGGCCTTCGATTTCCCGGAGTCAAGTCTGTGTCATCACCACCTTCATCCCCTCGACAGTTTCGCTATCCACTTTTCTTTCTCTTTTTTCTTCACAACCCAAACTGGATCACTATATTCCCTTTGGGGTTCCTCCGCTCTACCTCGCCTTCTTCGCTTCTTTTCCTTCAGGGAACCCTGTTGTTGTTTCCAGAGGCGCCGGGACTGGCATGGGTGTGTTCTTGCCTTTACGGAGCTAGTGATCAGATTTCCTTTGGATTTGTGGGTTATATCCTACAGTATGAAAGCTCCCCCAAATGGGTTTGTCCCCAATTCTGGAGAAGGTGAAAGGAAGAATATTAATTCTGAGTTATGGCATGCTTGTGCTGGACCTCTTGTTTCGTTACCGCCAGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGCCACAGTGAACAAGTTGCAGCATCCATGAATAAGGAGACTGATTTCATTCCAAACTACCCTAACCTTCCTTCAAAGTTGGTGTGCATGCTCCATAATGTCATATTACACGCTGATCCTGAAACTGATGAAGTGTATGCACAAATGACCCTTCAACCAGTGAATAAATATGAAAAAGAAGCTTTATTGGCATCTGATATTGGCCTCAAGCAAAACAGGCAGCCTGCTGAGTTCTTCTGCAAAACTCTAACAGCTAGTGACACTAGCACTCACGGTGGATTTTCTGTGCCTCGTCGTGCAGCTGAGAAGATTTTTCCCCCATTAGACTACTCGATGCAACCCCCTGCTCAGGAACTAGTAGCTAGAGATTTGCATGATAATTCATGGACATTCAGACATATTTACCGTGGCCAACCAAAACGACACCTTCTGACCACTGGGTGGAGTGTTTTTGTTAGCACAAAACGAGTCTTCGCCGGTGACTCGGTGCTGTTTATAAGAGATGAAAAGTCACAGCTTCTTTTAGGCATAAGGCACGCTAACAGGCAGCAGCCCGCTCTGTCTTCGTCGGTCATATCAAGTGATAGCATGCACATAGGGATTCTTGCTTCTGCTGCTCATGCTGCTGCAAATAACAGTCCTTTTACTATATTTTACAACCCTAGGGCCAGTCCTTCTGAATTTGTCATTCCTTTGGCCAAGTATACGAAAGCAATGTACACACAAGTTTCGCTTGGCATGCGATTTAGGATGATGTTTGAAACTGAGGAGTCGGGAGTACGCAGATATATGGGTACAATTACTGGTATCAGTGACATGGATTCTGTACGATGGAAAAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCGGCAGCTGGTGAACGACCGAGCCGAGTTTCTATATGGGAAGTTGAGCCGGTTGTGACCCCGTTCTACATATGTCCACCTCCATTTTTCAGACCCAAATTCCCTAAACAACCAGGGATGCCAGATGATGAATCTGATATTGAAAATGCTTTCAAGAGAGCCATGCCGTGGTTCGGTGACGACTTTGGCATGAAAGATACACCAAGCTCGATCTTCCCGGGTTTAAGTTTAGTGCAGTGGATGAGCATGCAACATAATAGTCAGTTCCCAGCAGCTCAATCTGGAATTTTGCCGTCCATGGTTGCTCCTAGTGCTTTGCATGGAACTTTAACCAACGATGATCCATCTAAATTATTGTGTTTTCAAGCTCCAGTAATGTCGTCATCAAATCTCCAATTCAGCAAGGCAAATCAACAGAACCAAGTTGGCCAGTTGCCAGCAACGTCGTGGTCTCAACAGCAGCAGCTGCAGCAGTTGCCACCCCAGCCGGAACTACGACAGCAGCAGCAGCAGCCGAAGCAGTCGCAACAACAACAACAGACCTCCCAATCCGCTCTTCCGAACAATGGTGTTGGTGGTGCAAACCATTTGTCAAATCAGAGTTTGCAACAACCACTTGTATACTCTCAGCTACAGCAACAGCAACAGCAATTGCTTGCGGGAAATGTACAATCACATCAAACTAGCCAACCATCCAATAAAAACTCGATTGAGACGACATCTTTATTGCAGGAAACACAGTTTCAGCCACAAATAGATCAGCAGCCTACCCTTGTTTCGAAACACCATCAGCAGACACAATTTCAACAGGCCCCACTGCAATTATTGCAACAAAGTCTGTCTCAAAGAACACAACAACAGCCACAAGTTCAGCAATTTTCACAGCCAATAATCCCTTCAGAGCAACAACTGCAATGGCAGCTGCTACAGAAGCTGCAACAACAGCAACAGCAACAGCAACAGCAGCAACCGTTGGTCTCCCCAGCTAGCCCGCTATTTCCACCTCAAATGATACAGCCGCATCCTGTGCATCAGCAAAACCAGCAGTTACCACCCTTGCCTTTGTCCAATCAGCCACAGTTCAACACTAGTGGAGGCAGCTTCCAAACAGAAAAACATAACAGCAATGGCTTCTCAAGTTTAGGTCTGATGCAGTCCCAGCAGGTTCCTATAACCCAATCCCATAACCAATTCAAACCAACCACGGCAATTAGGGGATATTCTGGACTGACTGATGGTGATGCTCCGTCTTGTTCAACCTCGCCTTCCACTAATAATTGCCAAGTTTCAGTATCAAACCTGCTCAATAAGAATCAACAAGGAGCAGCCACACTGGGGGGAGATTTGGTAGTTGAGCCTGCAACTAACCTGCCTCAGGAGCTGCCAAGCAAACCTGATTTGCGGAACAAACCCGAGTTTCCTAACTCAAAAGGATTGGACCAACTGAAATATAAAGGCACCGTTCCCGATCAGGTAGAAGCATCTTCTTCTGGAACATCATATTGTCTGGATGCTGGCACCATTCAGCAGACTTTCCCACTCCCTACATGTTTGGATAACGATGTCCAATCACACCCACAAACCAACATCCCCTTCAGTAATAGCATTGATGGATGGGCTCCAGATACCTTATTGTCGAGGGGATACGACTCTCAAAAAGATCTTCAGAACTTACTTTCGAACTACGAGGGGGGTGTGCCAAGAGATATTGAGACAGAGTTGTCCACTGCTGCAATCCGCTCGCAGTCATTTGGGGTTCCAAACTTGCCCTTCAAGCCTGGCTGCTCGAATGATGTCAACGTCAATGAAGCTGGAGCCTTAAGTAGTGGATTGTGGGCAAATCACAGTCAACGAATGCGGACATACACAAAGGTTCAAAAGCGTGGATCAGTGGGTAGATGCATCGATGTCACTCGTTACAAAGGATATGACGAGCTTAGGCATGATCTTGCCCGAATGTTTGGTATTGAAGGGCAGTTAGAAGATCCTCAACGAACTGATTGGAAACTTGTTTATGTGGATCATGAAAATGATATACTTCTAGTTGGCGATGATCCTTGGGAGGAGTTTGTGAGCTGTGTTCAGAGCATAAAGATCCTATCATCTTCTGAAGTACAGCAGATGAGTTTAAATGGAAATTTGGGTCACATTCAGGCTCCCAATCAAGCTTGCAGCGGGACGGACAGTGGAAACGCATGGAGAGGGCAGTATGATGACAACTCGGCTGCCTCGTTCAATTGA 3537 46.14 MAFDFPESSLCHHHLHPLDSFAIHFSFSFFFTTQTGSLYSLWGSSALPRLLRFFSFREPCCCFQRRRDWHGCVLAFTELVIRFPLDLWVISYSMKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRVFAGDSVLFIRDEKSQLLLGIRHANRQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYTKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQVGWDESAAGERPSRVSIWEVEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWFGDDFGMKDTPSSIFPGLSLVQWMSMQHNSQFPAAQSGILPSMVAPSALHGTLTNDDPSKLLCFQAPVMSSSNLQFSKANQQNQVGQLPATSWSQQQQLQQLPPQPELRQQQQQPKQSQQQQQTSQSALPNNGVGGANHLSNQSLQQPLVYSQLQQQQQQLLAGNVQSHQTSQPSNKNSIETTSLLQETQFQPQIDQQPTLVSKHHQQTQFQQAPLQLLQQSLSQRTQQQPQVQQFSQPIIPSEQQLQWQLLQKLQQQQQQQQQQQPLVSPASPLFPPQMIQPHPVHQQNQQLPPLPLSNQPQFNTSGGSFQTEKHNSNGFSSLGLMQSQQVPITQSHNQFKPTTAIRGYSGLTDGDAPSCSTSPSTNNCQVSVSNLLNKNQQGAATLGGDLVVEPATNLPQELPSKPDLRNKPEFPNSKGLDQLKYKGTVPDQVEASSSGTSYCLDAGTIQQTFPLPTCLDNDVQSHPQTNIPFSNSIDGWAPDTLLSRGYDSQKDLQNLLSNYEGGVPRDIETELSTAAIRSQSFGVPNLPFKPGCSNDVNVNEAGALSSGLWANHSQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSSEVQQMSLNGNLGHIQAPNQACSGTDSGNAWRGQYDDNSAASFN 1178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11717942 11724674 - CmoCh12G013660.1 Cmo12g01366 394054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01366 1178 Pfam B3 DNA binding domain 219 319 IPR003340 GO:0003677
Cmo12g01366 1178 Gene3D - 382 453 - -
Cmo12g01366 1178 MobiDBLite consensus disorder prediction 888 914 - -
Cmo12g01366 1178 Pfam Auxin response factor 345 427 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo12g01366 1178 Gene3D - 1047 1141 - -
Cmo12g01366 1178 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 94 1166 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo12g01366 1178 SUPERFAMILY CAD & PB1 domains 1065 1130 - -
Cmo12g01366 1178 PANTHER AUXIN RESPONSE FACTOR 19 94 1166 - -
Cmo12g01366 1178 ProSiteProfiles PB1 domain profile. 1052 1139 IPR000270 GO:0005515
Cmo12g01366 1178 CDD B3_DNA 218 318 IPR003340 GO:0003677
Cmo12g01366 1178 SMART B3_2 219 321 IPR003340 GO:0003677
Cmo12g01366 1178 MobiDBLite consensus disorder prediction 751 812 - -
Cmo12g01366 1178 MobiDBLite consensus disorder prediction 569 629 - -
Cmo12g01366 1178 ProSiteProfiles B3 DNA-binding domain profile. 219 321 IPR003340 GO:0003677
Cmo12g01366 1178 MobiDBLite consensus disorder prediction 772 812 - -
Cmo12g01366 1178 Gene3D - 217 320 IPR015300 -
Cmo12g01366 1178 Pfam AUX/IAA family 1049 1139 IPR033389 -
Cmo12g01366 1178 SUPERFAMILY DNA-binding pseudobarrel domain 209 348 IPR015300 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g01425 Cmo12g01366 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00930 Cmo-Chr12:8645593 Cmo12g01366 Cmo-Chr12:11717942 0 dispersed
Cmo12g01366 Cmo-Chr12:11717942 Cmo15g00807 Cmo-Chr15:3977365 7.24E-29 dispersed
Cmo12g01366 Cmo-Chr12:11717942 Cmo05g01425 Cmo-Chr5:10923211 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10793 PF02309 AUX_IAA 4.40E-10 CL0072 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01366 K14486 - csv:101210917 1694.48