Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00001 ATGTGTCGATCACAGGAGTGGGCATATGTAGCCCTTCTCCTCCTGTGCTTCTCGTCGTCCATACTGCTTGTCGGTGCCGCAGAGCCGGTTACCCACCCCTCTGAAGTGGACGCTTTGCGAGACATCAAGAGAAGTTTGTTCGATCCTAATGGGAATCTGAGCAACTGGAACAGAGGAGATCCTTGTATTTCAAACTGGACTGGTGTTCTGTGCGACAATACCACATTGGATGATAACTATCGGCATGTTACTGAATTGCAACTTCTAAATATGAGCTTATCGGGAAATTTGTCCCCTGCGCTTGGCCGTTTATCTTACCTGAAAGTTTTGGACTTCATGTGGAATGAGATCAATGGGGAAATACCAGGAGAGATAGGCAATCTTACGTCCTTAGAACTGTTGCTTCTGAATGGGAACCAGTTGTCAGGTTCATTGCCTGAAGAGCTTGGGAATCTTCTACGTTTAGACAGAATACAGATTGACCAGAACCATATATCAGGACCCATACCTAAGTCATTTGCAAACTTAAAAGCAGCAAAGCATTTTCACATGAATAACAACTCTATCAGTGGTGAAATCCCATCTGAGCTATCTAGATTGCCTAATCTTGTCCACATCCTTCTTGACAATAACAACTTATCGGGGAAGCTTCCACCAGAGTTGTTTCAATTGCCCAACTTAGAAATACTTCAACTTGACAATAACAACTTCAGTGGGTCCACAATACCAGACTCTTATGGAAATATGACTAAATTGCTGAAATTGAGTCTAAGGAACTGTACCTTGCAAGGACCAATTCCTGATCTGAGCAGAATAAATAACCTCGGTTATCTAGATCTAAGTTCCAATCAACTTAGTGGATTCCTACCACAAAATAAACTCTCTGTGAATATCACAACCATCATCTTATCCAACAACCATCTTTCTGGCACCATACCATCCAGTTTTTCGAATCTACCGCATCTTCAGAAATTGTCAATTGCAAATAATTCATTGAACGGCTCTGTTCCATCTACCATATGGCAAAGCAGGACGCTCAATTCTCTGGACAGCCTTACAGTAGAGCTGCAGAACAACAATTTTTCAAATATTTTGGGAAGCATTGATCTCCCTCTGAATGTCTCTGTCTGGCTTCATGGAAATCCTGTTTGTTCTAATAATAGCCTGCTGGACTTTTGTGGATCTGAGAGTGGGGATATAATTGACATTCCAACAAATAACACTCTTGGCTGTTCTGGCCCAATATGCCCACCTTCTTACGAATGTTACTCAGCAAAATGTCCCTCATCTTGTTTCTGTTCTGCACCTCTTATAATTGGATATCGTTTGAAAAGTCCTGGATTCTCACGTTTTAGTCCATATCAACATATGTTTGAGGAGTACCTGACCAGTGGTCTTAAATTACATCTTGAACAATTGGACATTGGTTCTCCTGTGTGGGAAAAAGGACCTCGATTAAGAATGAGCTTGAAGCTTTTCCCTCTATATATTGCTGATAGCAATAGTTCTCACATGTTCAATGACAGCGAGGTTTTACAAATTGTTTCCAAGTTTACAAATTGGAAAATTCAAGAAAGCGATATATTTGGACCGTATGAACTTCTCAGCTTGACAATATCTGACGTTTATAAAAAGGTATTTCTCACACCATCATCTGATTCTACTTTGAGTAAGGGGGCATTGGCTGGAATAATTTTAGGAGCAATTGCTGGCGGAGCAATGCTATCTGCAATTGTTTTCATTTTTATTATAAGATCACGCGTGAGGGGCCACCACATCTTAAGAAAGCGTCATCTGTCAAAAGCCTCCTTAAAGATTGAGGGCGTAAAGGAATTTGGTTACCGTGAAATGGCCCTAGCTACAAGCAATTTTCATGATTCTACGGTAGTTGGTCAAGGTGGTTACGGAAAGGTTTACAGAGGCATTCTATCAGATAACACAGCTGTTGCAATCAAACGTGCACAGGAAGGCTCACTACAGGGTGAAAAAGAGTTCCTTACTGAAATACAGTTATTGTCAAGGTTACACCACCGAAATCTTGTGGCTTTGATTGGATATTGCGATGAAGAAGGGGAGCAGATGTTGGCTTATGAGTTTATGTCCAATGGCTCGCTGAGGGATCACCTTTCTGTAAATTCTGCAGAACCTTTGAGCTTTGCCACAAGATTAAAAGCTGCCCTGGGTGCAGCTAAGGGAATTCTGTACCTGCATACAGAAGCTGATCCTCCAATATTCCACCGAGATATCAAGTCCAGCAACATATTATTAGACTCCAAGTATACAGCAAAGGTTGCTGATTTTGGACTTTCACGGCTTGCACCTCCACCAGACGCAGAGGGCAACGTGCCTGCTCATGTATCGACAGTAGTAAAAGGGACACCGGGTTATCTTGATCCAGAGTACTTCTTGACTCATAAATTGACCGATAAGAGCGATGTTTATAGTCTTGGTGTTGTATTTTTGGAGCTTTTGACTGGGAGGCACCCAATCTCACATGGCAAGAACATTGTTAGGGAGGTTAAAGTTGCATATGAGTCGGGAAAATTTTTCTCAATAATTGATGGTCGACTGGGATCTTATCCCGCTGAATGCGTGGAAAGATTTGTGACATTGGCTTTGAAGTGTTGCCAAGACGATACAGATGCACGTCCTTCAATGGCAGAGGTTGTTCGTACACTTGAAAGTATTTGGCTTATGTTGCCGGAGTCTGATGTGAAAATTGCAGAGCCTTTAATCTCCGATGTTATAAAAGTGAGCAGTACCCCATCTTCATCAACCAACATGAATAACTATTACATGTCAGAGGTCTCTGGTAGTGACCTTGTAAGTGGAATAACTCCCACTATCACGCCCAGATAG 2859 41.9 MCRSQEWAYVALLLLCFSSSILLVGAAEPVTHPSEVDALRDIKRSLFDPNGNLSNWNRGDPCISNWTGVLCDNTTLDDNYRHVTELQLLNMSLSGNLSPALGRLSYLKVLDFMWNEINGEIPGEIGNLTSLELLLLNGNQLSGSLPEELGNLLRLDRIQIDQNHISGPIPKSFANLKAAKHFHMNNNSISGEIPSELSRLPNLVHILLDNNNLSGKLPPELFQLPNLEILQLDNNNFSGSTIPDSYGNMTKLLKLSLRNCTLQGPIPDLSRINNLGYLDLSSNQLSGFLPQNKLSVNITTIILSNNHLSGTIPSSFSNLPHLQKLSIANNSLNGSVPSTIWQSRTLNSLDSLTVELQNNNFSNILGSIDLPLNVSVWLHGNPVCSNNSLLDFCGSESGDIIDIPTNNTLGCSGPICPPSYECYSAKCPSSCFCSAPLIIGYRLKSPGFSRFSPYQHMFEEYLTSGLKLHLEQLDIGSPVWEKGPRLRMSLKLFPLYIADSNSSHMFNDSEVLQIVSKFTNWKIQESDIFGPYELLSLTISDVYKKVFLTPSSDSTLSKGALAGIILGAIAGGAMLSAIVFIFIIRSRVRGHHILRKRHLSKASLKIEGVKEFGYREMALATSNFHDSTVVGQGGYGKVYRGILSDNTAVAIKRAQEGSLQGEKEFLTEIQLLSRLHHRNLVALIGYCDEEGEQMLAYEFMSNGSLRDHLSVNSAEPLSFATRLKAALGAAKGILYLHTEADPPIFHRDIKSSNILLDSKYTAKVADFGLSRLAPPPDAEGNVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGRHPISHGKNIVREVKVAYESGKFFSIIDGRLGSYPAECVERFVTLALKCCQDDTDARPSMAEVVRTLESIWLMLPESDVKIAEPLISDVIKVSSTPSSSTNMNNYYMSEVSGSDLVSGITPTITPR 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 22044 35486 - CmoCh13G000010.1 Cmo13g00001 394056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00001 952 SMART serkin_6 624 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00001 952 ProSitePatterns Protein kinases ATP-binding region signature. 630 652 IPR017441 GO:0005524
Cmo13g00001 952 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 15 927 - -
Cmo13g00001 952 Gene3D Ribonuclease Inhibitor 295 382 IPR032675 -
Cmo13g00001 952 Gene3D Transferase(Phosphotransferase) domain 1 700 904 - -
Cmo13g00001 952 CDD STKc_IRAK 630 896 - -
Cmo13g00001 952 SUPERFAMILY L domain-like 47 411 - -
Cmo13g00001 952 Pfam Leucine rich repeat 297 350 IPR001611 GO:0005515
Cmo13g00001 952 Pfam Leucine rich repeat 154 213 IPR001611 GO:0005515
Cmo13g00001 952 ProSiteProfiles Leucine-rich repeat profile. 274 295 IPR001611 GO:0005515
Cmo13g00001 952 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 927 - -
Cmo13g00001 952 Pfam Protein kinase domain 624 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00001 952 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Cmo13g00001 952 Gene3D Phosphorylase Kinase; domain 1 595 699 - -
Cmo13g00001 952 Gene3D Ribonuclease Inhibitor 32 187 IPR032675 -
Cmo13g00001 952 ProSiteProfiles Protein kinase domain profile. 624 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00001 952 SUPERFAMILY Protein kinase-like (PK-like) 610 927 IPR011009 -
Cmo13g00001 952 Gene3D Ribonuclease Inhibitor 188 294 IPR032675 -
Cmo13g00001 952 SMART LRR_typ_2 200 224 IPR003591 -
Cmo13g00001 952 SMART LRR_typ_2 128 152 IPR003591 -
Cmo13g00001 952 SMART LRR_typ_2 319 343 IPR003591 -
Cmo13g00001 952 ProSitePatterns Serine/Threonine protein kinases active-site signature. 744 756 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00291 Cmo-Chr3:4131651 Cmo13g00001 Cmo-Chr13:22044 0 dispersed
Cmo06g00168 Cmo-Chr6:914044 Cmo13g00001 Cmo-Chr13:22044 3.21E-161 dispersed
Cmo07g01248 Cmo-Chr7:6829015 Cmo13g00001 Cmo-Chr13:22044 0 dispersed
Cmo13g00001 Cmo-Chr13:22044 Cmo14g01155 Cmo-Chr14:9107560 3.97E-162 dispersed
Cmo01g00769 Cmo-Chr1:3980083 Cmo13g00001 Cmo-Chr13:22044 3.00E-10 transposed
Cmo01g00770 Cmo-Chr1:3993173 Cmo13g00001 Cmo-Chr13:22044 2.39E-15 transposed
Cmo01g00768 Cmo-Chr1:3972850 Cmo13g00001 Cmo-Chr13:22044 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74757 PF00069 Pkinase 4.30E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00001 - - csv:101208136 1627.45